FFCP PHASE1:Hg19::chr18:47087250..47087279,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9388 | |EntrezGene=9388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6623 | |HGNC=6623 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=181bp_to_AK125344_5end | |association_with_transcript=181bp_to_AK125344_5end | ||
|cluster_id=chr18:47087250..47087279,+ | |||
|coexpression_cluster_id=C113 | |||
|description=CAGE_peak_2_at_LIPG_5end | |description=CAGE_peak_2_at_LIPG_5end | ||
|id=chr18:47087250..47087279,+ | |id=chr18:47087250..47087279,+ | ||
|ontology_enrichment_celltype=CL:0002139!9.74e-17!24;CL:0002078!5.51e-15!44;CL:1000507!1.77e-14!12;CL:1000494!1.77e-14!12;CL:1000449!2.63e-14!16;CL:0000115!4.29e-14!35;CL:1000497!2.94e-12!18;CL:0002518!2.94e-12!18;CL:0000071!9.09e-12!18;CL:0002546!9.09e-12!18;CL:0002681!2.90e-10!13;CL:0002584!2.90e-10!13;CL:0000222!4.24e-08!119;CL:1000413!7.34e-08!9;CL:0000213!9.53e-08!57;CL:0000215!9.53e-08!57 | |ontology_enrichment_celltype=CL:0002139!9.74e-17!24;CL:0002078!5.51e-15!44;CL:1000507!1.77e-14!12;CL:1000494!1.77e-14!12;CL:1000449!2.63e-14!16;CL:0000115!4.29e-14!35;CL:1000497!2.94e-12!18;CL:0002518!2.94e-12!18;CL:0000071!9.09e-12!18;CL:0002546!9.09e-12!18;CL:0002681!2.90e-10!13;CL:0002584!2.90e-10!13;CL:0000222!4.24e-08!119;CL:1000413!7.34e-08!9;CL:0000213!9.53e-08!57;CL:0000215!9.53e-08!57 | ||
|ontology_enrichment_celltype_v019=CL:1000507;3.75e-29;10!CL:1000494;3.75e-29;10!CL:1000449;3.62e-19;15!CL:0002139;5.13e-19;24!CL:1000497;8.17e-17;17!CL:0002518;8.17e-17;17!CL:0000115;8.01e-14;36!CL:0000650;4.32e-13;2!CL:1000500;4.32e-13;2!CL:1000618;4.32e-13;2!CL:1001318;4.32e-13;2!CL:0002173;4.32e-13;2!CL:0000071;1.22e-11;18!CL:1000413;5.91e-11;9!CL:0002078;1.49e-10;45!CL:0002138;1.01e-09;6!CL:0002681;3.82e-08;12!CL:0002584;3.82e-08;12!CL:0000669;5.72e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.03e-29,10;CL:1000494,2.03e-29,10;CL:1000449,2.42e-19,15;CL:0002139,6.62e-19,24;CL:1000497,5.74e-17,17;CL:0002518,5.74e-17,17;CL:0000115,4.54e-15,36;CL:0002078,3.58e-14,45;CL:0000650,2.49e-13,2;CL:1000500,2.49e-13,2;CL:1000618,2.49e-13,2;CL:1001318,2.49e-13,2;CL:0002173,2.49e-13,2;CL:0000071,1.56e-11,18;CL:0002546,1.56e-11,18;CL:1000413,6.74e-11,9;CL:0005020,9.83e-10,6;CL:0002138,9.83e-10,6;CL:0005022,9.83e-10,6;CL:0000213,1.07e-08,58;CL:0000215,1.07e-08,58;CL:0002681,3.09e-08,12;CL:0002584,3.09e-08,12;CL:0000669,4.35e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002546;1.22e-11;18!CL:0005022;1.01e-09;6!UBERON:0000358;1.51e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;1.51e-07;1!DOID:4549;1.51e-07;1!DOID:5861;1.51e-07;1!DOID:6496;1.51e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.83e-07,1;DOID:4549,1.83e-07,1;DOID:5861,1.83e-07,1;DOID:6496,1.83e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003914!4.19e-21!118;UBERON:0004111!1.87e-18!241;UBERON:0000025!4.58e-18!194;UBERON:0000055!2.95e-16!69;UBERON:0006555!1.39e-15!17;UBERON:0005103!1.39e-15!17;UBERON:0000083!1.39e-15!17;UBERON:0009201!1.39e-15!17;UBERON:0004819!1.39e-15!17;UBERON:0006553!1.39e-15!17;UBERON:0003074!1.39e-15!17;UBERON:0003060!1.39e-15!17;UBERON:0003103!9.40e-15!69;UBERON:0009773!1.77e-14!12;UBERON:0001231!1.77e-14!12;UBERON:0004810!1.77e-14!12;UBERON:0000080!1.84e-14!18;UBERON:0002120!1.84e-14!18;UBERON:0004875!1.84e-14!18;UBERON:0005721!1.84e-14!18;UBERON:0005754!1.84e-14!18;UBERON:0007297!1.84e-14!18;UBERON:0004211!2.63e-14!16;UBERON:0001285!2.63e-14!16;UBERON:0007684!2.63e-14!16;UBERON:0003220!2.63e-14!16;UBERON:0004208!2.63e-14!16;UBERON:0000489!3.78e-14!32;UBERON:0000477!7.39e-14!286;UBERON:0001981!1.74e-13!60;UBERON:0007500!1.74e-13!60;UBERON:0004537!1.74e-13!60;UBERON:0006965!1.74e-13!60;UBERON:0002049!8.19e-13!79;UBERON:0007798!8.19e-13!79;UBERON:0002113!8.62e-13!27;UBERON:0003918!8.62e-13!27;UBERON:0005095!8.62e-13!27;UBERON:0007687!8.62e-13!27;UBERON:0004872!1.32e-12!84;UBERON:0004876!1.46e-12!20;UBERON:0001986!9.09e-12!18;UBERON:0004638!9.09e-12!18;UBERON:0004852!9.09e-12!18;UBERON:0003887!9.41e-12!21;UBERON:0000483!1.00e-11!309;UBERON:0000119!2.15e-11!312;UBERON:0000058!2.41e-11!26;UBERON:0000353!1.08e-10!17;UBERON:0001009!2.58e-10!113;UBERON:0001225!2.90e-10!13;UBERON:0008987!2.90e-10!13;UBERON:0004535!3.21e-10!110;UBERON:0001637!1.47e-09!42;UBERON:0003509!1.47e-09!42;UBERON:0004572!1.47e-09!42;UBERON:0006554!3.15e-09!44;UBERON:0000487!6.27e-09!22;UBERON:0001008!6.88e-09!45;UBERON:0003064!2.82e-08!37;UBERON:0005172!5.05e-08!55;UBERON:0005173!5.05e-08!55;UBERON:0003915!7.34e-08!9;UBERON:0004700!7.34e-08!9;UBERON:0001917!7.34e-08!9;UBERON:0001851!7.87e-08!16;UBERON:0006914!2.02e-07!25;UBERON:0007023!3.26e-07!115;UBERON:0004573!3.28e-07!33;UBERON:0004571!3.28e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;3.75e-29;10!UBERON:0009773;3.75e-29;10!UBERON:0001231;3.75e-29;10!UBERON:0004810;3.75e-29;10!UBERON:0006555;3.62e-19;15!UBERON:0004819;3.62e-19;15!UBERON:0001285;3.62e-19;15!UBERON:0007684;3.62e-19;15!UBERON:0002113;2.92e-15;24!UBERON:0011143;2.92e-15;24!UBERON:0000341;6.66e-14;2!UBERON:0003567;4.32e-13;2!UBERON:0003838;4.32e-13;2!UBERON:0003586;4.32e-13;2!UBERON:0005169;4.32e-13;2!UBERON:0002321;4.32e-13;2!UBERON:0005215;4.32e-13;2!UBERON:0002303;4.32e-13;2!UBERON:0002319;4.32e-13;2!UBERON:0000489;1.99e-12;29!UBERON:0006554;5.65e-12;30!UBERON:0001008;5.65e-12;30!UBERON:0004638;1.22e-11;18!UBERON:0001986;1.22e-11;18!UBERON:0004852;1.22e-11;18!UBERON:0003915;5.91e-11;9!UBERON:0004700;5.91e-11;9!UBERON:0001917;5.91e-11;9!UBERON:0003914;2.94e-10;74!UBERON:0000353;7.30e-10;15!UBERON:0000487;2.01e-09;22!UBERON:0006914;3.16e-08;25!UBERON:0001225;3.82e-08;12!UBERON:0008987;3.82e-08;12!UBERON:0003103;1.01e-07;61!UBERON:0001473;2.11e-07;8!UBERON:0004536;2.11e-07;8!UBERON:0006558;2.11e-07;8!UBERON:0002134;3.20e-07;1!UBERON:0001301;3.20e-07;1!UBERON:0005208;3.20e-07;1!UBERON:0004145;3.20e-07;1!UBERON:0005946;3.20e-07;1!UBERON:0005965;3.20e-07;1!UBERON:0002078;3.20e-07;1!UBERON:0000055;4.54e-07;65!UBERON:0003891;5.72e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.03e-29,10;UBERON:0006555,2.34e-23,16;UBERON:0004819,2.34e-23,16;UBERON:0004211,2.42e-19,15;UBERON:0009773,2.42e-19,15;UBERON:0001231,2.42e-19,15;UBERON:0001285,2.42e-19,15;UBERON:0007684,2.42e-19,15;UBERON:0004208,2.42e-19,15;UBERON:0002113,1.02e-17,26;UBERON:0003918,1.02e-17,26;UBERON:0011143,1.02e-17,26;UBERON:0005095,1.02e-17,26;UBERON:0007687,1.02e-17,26;UBERON:0003914,1.70e-16,117;UBERON:0000489,1.27e-14,31;UBERON:0003103,1.44e-14,68;UBERON:0000341,6.26e-14,2;UBERON:0003567,2.49e-13,2;UBERON:0003838,2.49e-13,2;UBERON:0003586,2.49e-13,2;UBERON:0005169,2.49e-13,2;UBERON:0002321,2.49e-13,2;UBERON:0005215,2.49e-13,2;UBERON:0002303,2.49e-13,2;UBERON:0002319,2.49e-13,2;UBERON:0000055,1.87e-12,68;UBERON:0004638,1.56e-11,18;UBERON:0001986,1.56e-11,18;UBERON:0004852,1.56e-11,18;UBERON:0003915,6.74e-11,9;UBERON:0004700,6.74e-11,9;UBERON:0001917,6.74e-11,9;UBERON:0002049,1.55e-10,78;UBERON:0007798,1.55e-10,78;UBERON:0000353,5.47e-10,15;UBERON:0005172,1.17e-09,54;UBERON:0005173,1.17e-09,54;UBERON:0004535,2.33e-09,109;UBERON:0000487,2.44e-09,22;UBERON:0006554,3.81e-09,47;UBERON:0001009,4.99e-09,112;UBERON:0001008,6.33e-09,48;UBERON:0004111,1.32e-08,240;UBERON:0002417,1.61e-08,60;UBERON:0000916,1.61e-08,60;UBERON:0007500,1.67e-08,59;UBERON:0001981,1.67e-08,59;UBERON:0004537,1.67e-08,59;UBERON:0006965,1.67e-08,59;UBERON:0000025,2.17e-08,192;UBERON:0001225,3.09e-08,12;UBERON:0008987,3.09e-08,12;UBERON:0006914,3.74e-08,25;UBERON:0004872,3.99e-08,83;UBERON:0001473,2.06e-07,8;UBERON:0004536,2.06e-07,8;UBERON:0006558,2.06e-07,8;UBERON:0005103,2.35e-07,8;UBERON:0000083,2.35e-07,8;UBERON:0009201,2.35e-07,8;UBERON:0006553,2.35e-07,8;UBERON:0003074,2.35e-07,8;UBERON:0003060,2.35e-07,8;UBERON:0002134,3.20e-07,1;UBERON:0005208,3.20e-07,1;UBERON:0005946,3.20e-07,1;UBERON:0005965,3.20e-07,1;UBERON:0002078,3.20e-07,1;UBERON:0001301,3.62e-07,1;UBERON:0003891,4.35e-07,4 | |||
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| ||
|short_description=p2@LIPG | |short_description=p2@LIPG | ||
}} | }} |
Latest revision as of 17:39, 19 September 2015
Short description: | p2@LIPG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIPG_5end |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | 181bp_to_AK125344_5end |
EntrezGene: | LIPG |
HGNC: | 6623 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.03e-29 | 10 |
nephron tubule epithelial cell | 2.03e-29 | 10 |
epithelial cell of nephron | 2.42e-19 | 15 |
endothelial cell of vascular tree | 6.62e-19 | 24 |
kidney cell | 5.74e-17 | 17 |
kidney epithelial cell | 5.74e-17 | 17 |
endothelial cell | 4.54e-15 | 36 |
meso-epithelial cell | 3.58e-14 | 45 |
mesangial cell | 2.49e-13 | 2 |
kidney interstitial cell | 2.49e-13 | 2 |
juxtaglomerular complex cell | 2.49e-13 | 2 |
renal interstitial pericyte | 2.49e-13 | 2 |
extraglomerular mesangial cell | 2.49e-13 | 2 |
blood vessel endothelial cell | 1.56e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.56e-11 | 18 |
endothelial cell of artery | 6.74e-11 | 9 |
lymphangioblast | 9.83e-10 | 6 |
endothelial cell of lymphatic vessel | 9.83e-10 | 6 |
vascular lymphangioblast | 9.83e-10 | 6 |
lining cell | 1.07e-08 | 58 |
barrier cell | 1.07e-08 | 58 |
kidney cortical cell | 3.09e-08 | 12 |
renal cortical epithelial cell | 3.09e-08 | 12 |
pericyte cell | 4.35e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.83e-07 | 1 |
extraosseous chondrosarcoma | 1.83e-07 | 1 |
myxoid chondrosarcoma | 1.83e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 1.83e-07 | 1 |