FFCP PHASE1:Hg19::chr14:36278412..36278437,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=253959 | |EntrezGene=253959 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17770 | |HGNC=17770 | ||
|TSSclassifier=strong | |||
|UniProt=E7EQJ8,Q6GYQ0 | |UniProt=E7EQJ8,Q6GYQ0 | ||
|association_with_transcript=0bp_to_ENST00000258840,ENST00000335518,ENST00000389698,NM_014990,NM_194301,uc001wti.2,uc001wtj.2,uc010tpv.1,uc010tpw.1_5end | |association_with_transcript=0bp_to_ENST00000258840,ENST00000335518,ENST00000389698,NM_014990,NM_194301,uc001wti.2,uc001wtj.2,uc010tpv.1,uc010tpw.1_5end | ||
|cluster_id=chr14:36278412..36278437,- | |||
|coexpression_cluster_id=C22 | |||
|description=CAGE_peak_2_at_RALGAPA1_5end | |description=CAGE_peak_2_at_RALGAPA1_5end | ||
|id=chr14:36278412..36278437,- | |id=chr14:36278412..36278437,- | ||
|ontology_enrichment_celltype=CL:0000738!3.99e-23!140;CL:0000037!1.59e-18!172;CL:0000566!1.59e-18!172;CL:0002031!7.99e-17!124;CL:0000988!1.56e-16!182;CL:0002032!5.01e-16!165;CL:0000837!5.01e-16!165;CL:0002087!1.03e-15!119;CL:0000838!3.29e-14!52;CL:0000542!4.85e-14!53;CL:0000051!4.85e-14!53;CL:0000791!4.99e-11!18;CL:0000789!4.99e-11!18;CL:0002420!4.99e-11!18;CL:0002419!4.99e-11!18;CL:0000790!4.99e-11!18;CL:0000084!4.72e-09!25;CL:0000827!4.72e-09!25;CL:0000625!2.16e-07!11 | |ontology_enrichment_celltype=CL:0000738!3.99e-23!140;CL:0000037!1.59e-18!172;CL:0000566!1.59e-18!172;CL:0002031!7.99e-17!124;CL:0000988!1.56e-16!182;CL:0002032!5.01e-16!165;CL:0000837!5.01e-16!165;CL:0002087!1.03e-15!119;CL:0000838!3.29e-14!52;CL:0000542!4.85e-14!53;CL:0000051!4.85e-14!53;CL:0000791!4.99e-11!18;CL:0000789!4.99e-11!18;CL:0002420!4.99e-11!18;CL:0002419!4.99e-11!18;CL:0000790!4.99e-11!18;CL:0000084!4.72e-09!25;CL:0000827!4.72e-09!25;CL:0000625!2.16e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.77e-11;18!CL:0000789;2.77e-11;18!CL:0002419;2.77e-11;18!CL:0000084;2.73e-09;25!CL:0000542;1.16e-08;53!CL:0000625;1.67e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.38e-23,136;CL:0000037,1.96e-18,168;CL:0002031,5.91e-17,120;CL:0000988,6.07e-17,177;CL:0002032,6.48e-16,161;CL:0000837,6.48e-16,161;CL:0002087,7.80e-16,115;CL:0000838,2.50e-14,52;CL:0000542,3.70e-14,53;CL:0000051,3.70e-14,53;CL:0000791,4.06e-11,18;CL:0000789,4.06e-11,18;CL:0002420,4.06e-11,18;CL:0002419,4.06e-11,18;CL:0000790,4.06e-11,18;CL:0000084,4.01e-09,25;CL:0000827,4.01e-09,25;CL:0000625,1.90e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;2.77e-11;18!CL:0000051;1.16e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.71e-22!115;UBERON:0001049!1.38e-13!57;UBERON:0005068!1.38e-13!57;UBERON:0006241!1.38e-13!57;UBERON:0007135!1.38e-13!57;UBERON:0001017!2.09e-12!82;UBERON:0000073!2.47e-12!94;UBERON:0001016!2.47e-12!94;UBERON:0002780!4.32e-12!41;UBERON:0001890!4.32e-12!41;UBERON:0006240!4.32e-12!41;UBERON:0005743!6.38e-12!86;UBERON:0003080!7.56e-12!42;UBERON:0002616!4.35e-11!59;UBERON:0000955!3.03e-10!69;UBERON:0006238!3.03e-10!69;UBERON:0001893!5.42e-10!34;UBERON:0002020!1.55e-09!34;UBERON:0003528!1.55e-09!34;UBERON:0002791!1.59e-09!33;UBERON:0001869!2.68e-09!32;UBERON:0002619!1.19e-07!22;UBERON:0002346!2.80e-07!90;UBERON:0000956!2.93e-07!25;UBERON:0000203!2.93e-07!25;UBERON:0001950!3.47e-07!20;UBERON:0003075!4.50e-07!86;UBERON:0007284!4.50e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.18e-09;41!UBERON:0001890;4.18e-09;41!UBERON:0001893;1.08e-08;34!UBERON:0000073;1.60e-08;53!UBERON:0002616;1.60e-08;53!UBERON:0001869;2.07e-08;32!UBERON:0002791;2.52e-08;32!UBERON:0003528;2.71e-08;34!UBERON:0002020;2.71e-08;34!UBERON:0002619;9.48e-08;22!UBERON:0000956;2.18e-07;25!UBERON:0000203;2.18e-07;25!UBERON:0001950;2.42e-07;20!UBERON:0007023;6.76e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.61e-22,114;UBERON:0001049,6.64e-14,56;UBERON:0005068,6.64e-14,56;UBERON:0006241,6.64e-14,56;UBERON:0007135,6.64e-14,56;UBERON:0000073,5.94e-13,53;UBERON:0002616,5.94e-13,53;UBERON:0001016,7.29e-13,89;UBERON:0001017,1.74e-12,81;UBERON:0002780,3.44e-12,41;UBERON:0001890,3.44e-12,41;UBERON:0003080,3.44e-12,41;UBERON:0006240,3.44e-12,41;UBERON:0000955,2.63e-10,68;UBERON:0006238,2.63e-10,68;UBERON:0001893,4.52e-10,34;UBERON:0003528,1.31e-09,34;UBERON:0002020,1.31e-09,34;UBERON:0001869,2.26e-09,32;UBERON:0002791,3.59e-09,32;UBERON:0002619,1.04e-07,22;UBERON:0002346,1.51e-07,86;UBERON:0003075,2.42e-07,82;UBERON:0007284,2.42e-07,82;UBERON:0000956,2.59e-07,25;UBERON:0000203,2.59e-07,25;UBERON:0001950,3.07e-07,20;UBERON:0002390,7.26e-07,98;UBERON:0003061,7.26e-07,98 | |||
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| ||
|short_description=p2@RALGAPA1 | |short_description=p2@RALGAPA1 | ||
}} | }} |
Latest revision as of 21:35, 19 September 2015
Short description: | p2@RALGAPA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RALGAPA1_5end |
Coexpression cluster: | C22_CD4_CD8_Natural_Basophils_CD14_Peripheral_CD19 |
Association with transcript: | 0bp_to_ENST00000258840, ENST00000335518, ENST00000389698, NM_014990, NM_194301, uc001wti.2, uc001wtj.2, uc010tpv.1, uc010tpw.1_5end |
EntrezGene: | RALGAPA1 |
HGNC: | 17770 |
UniProt: | E7EQJ8Q6GYQ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.38e-23 | 136 |
hematopoietic stem cell | 1.96e-18 | 168 |
hematopoietic lineage restricted progenitor cell | 5.91e-17 | 120 |
hematopoietic cell | 6.07e-17 | 177 |
hematopoietic oligopotent progenitor cell | 6.48e-16 | 161 |
hematopoietic multipotent progenitor cell | 6.48e-16 | 161 |
nongranular leukocyte | 7.80e-16 | 115 |
lymphoid lineage restricted progenitor cell | 2.50e-14 | 52 |
lymphocyte | 3.70e-14 | 53 |
common lymphoid progenitor | 3.70e-14 | 53 |
mature alpha-beta T cell | 4.06e-11 | 18 |
alpha-beta T cell | 4.06e-11 | 18 |
immature T cell | 4.06e-11 | 18 |
mature T cell | 4.06e-11 | 18 |
immature alpha-beta T cell | 4.06e-11 | 18 |
T cell | 4.01e-09 | 25 |
pro-T cell | 4.01e-09 | 25 |
CD8-positive, alpha-beta T cell | 1.90e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.61e-22 | 114 |
neural tube | 6.64e-14 | 56 |
neural rod | 6.64e-14 | 56 |
future spinal cord | 6.64e-14 | 56 |
neural keel | 6.64e-14 | 56 |
regional part of nervous system | 5.94e-13 | 53 |
regional part of brain | 5.94e-13 | 53 |
nervous system | 7.29e-13 | 89 |
central nervous system | 1.74e-12 | 81 |
regional part of forebrain | 3.44e-12 | 41 |
forebrain | 3.44e-12 | 41 |
anterior neural tube | 3.44e-12 | 41 |
future forebrain | 3.44e-12 | 41 |
brain | 2.63e-10 | 68 |
future brain | 2.63e-10 | 68 |
telencephalon | 4.52e-10 | 34 |
brain grey matter | 1.31e-09 | 34 |
gray matter | 1.31e-09 | 34 |
cerebral hemisphere | 2.26e-09 | 32 |
regional part of telencephalon | 3.59e-09 | 32 |
regional part of cerebral cortex | 1.04e-07 | 22 |
neurectoderm | 1.51e-07 | 86 |
neural plate | 2.42e-07 | 82 |
presumptive neural plate | 2.42e-07 | 82 |
cerebral cortex | 2.59e-07 | 25 |
pallium | 2.59e-07 | 25 |
neocortex | 3.07e-07 | 20 |
hematopoietic system | 7.26e-07 | 98 |
blood island | 7.26e-07 | 98 |