FFCP PHASE1:Hg19::chr1:94375144..94375159,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2730 | |EntrezGene=2730 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4312 | |HGNC=4312 | ||
|TSSclassifier=strong | |||
|UniProt=P48507 | |UniProt=P48507 | ||
|association_with_transcript=-132bp_to_NM_002061,uc001dqg.1_5end | |association_with_transcript=-132bp_to_NM_002061,uc001dqg.1_5end | ||
|cluster_id=chr1:94375144..94375159,- | |||
|description=CAGE_peak_3_at_GCLM_5end | |description=CAGE_peak_3_at_GCLM_5end | ||
|id=chr1:94375144..94375159,- | |id=chr1:94375144..94375159,- | ||
|ontology_enrichment_celltype=CL:0000542!3.82e-17!53;CL:0000051!3.82e-17!53;CL:0000838!4.78e-17!52;CL:0000791!4.04e-09!18;CL:0000789!4.04e-09!18;CL:0002420!4.04e-09!18;CL:0002419!4.04e-09!18;CL:0000790!4.04e-09!18;CL:0000084!5.21e-09!25;CL:0000827!5.21e-09!25;CL:0000945!6.20e-08!24;CL:0000826!6.20e-08!24;CL:0000625!4.68e-07!11 | |ontology_enrichment_celltype=CL:0000542!3.82e-17!53;CL:0000051!3.82e-17!53;CL:0000838!4.78e-17!52;CL:0000791!4.04e-09!18;CL:0000789!4.04e-09!18;CL:0002420!4.04e-09!18;CL:0002419!4.04e-09!18;CL:0000790!4.04e-09!18;CL:0000084!5.21e-09!25;CL:0000827!5.21e-09!25;CL:0000945!6.20e-08!24;CL:0000826!6.20e-08!24;CL:0000625!4.68e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000542;9.65e-12;53!CL:0000084;9.61e-11;25!CL:0000791;2.14e-10;18!CL:0000789;2.14e-10;18!CL:0002419;2.14e-10;18!CL:0000945;1.18e-08;24!CL:0000625;1.37e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.29e-20,53;CL:0000051,1.29e-20,53;CL:0000838,1.76e-20,52;CL:0000791,2.19e-11,18;CL:0000789,2.19e-11,18;CL:0002420,2.19e-11,18;CL:0002419,2.19e-11,18;CL:0000790,2.19e-11,18;CL:0000084,3.33e-11,25;CL:0000827,3.33e-11,25;CL:0000945,9.07e-09,24;CL:0000826,9.07e-09,24;CL:0000625,1.04e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000051;9.65e-12;53!CL:0000790;2.14e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.70e-19!115;UBERON:0001049!1.94e-11!57;UBERON:0005068!1.94e-11!57;UBERON:0006241!1.94e-11!57;UBERON:0007135!1.94e-11!57;UBERON:0000955!1.03e-09!69;UBERON:0006238!1.03e-09!69;UBERON:0005743!2.68e-09!86;UBERON:0001017!5.11e-09!82;UBERON:0002616!5.41e-09!59;UBERON:0000073!9.61e-09!94;UBERON:0001016!9.61e-09!94;UBERON:0003080!2.27e-08!42;UBERON:0001869!2.46e-08!32;UBERON:0001893!2.60e-08!34;UBERON:0002020!3.31e-08!34;UBERON:0003528!3.31e-08!34;UBERON:0002780!3.48e-08!41;UBERON:0001890!3.48e-08!41;UBERON:0006240!3.48e-08!41;UBERON:0002346!3.77e-08!90;UBERON:0003075!5.78e-08!86;UBERON:0007284!5.78e-08!86;UBERON:0002791!5.92e-08!33;UBERON:0000956!2.93e-07!25;UBERON:0000203!2.93e-07!25;UBERON:0002619!4.49e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.97e-08;32!UBERON:0001893;1.06e-07;34!UBERON:0002791;2.51e-07;32!UBERON:0003528;3.16e-07;34!UBERON:0002020;3.16e-07;34!UBERON:0002619;3.48e-07;22!UBERON:0000956;4.74e-07;25!UBERON:0000203;4.74e-07;25!UBERON:0001950;9.26e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.05e-19,114;UBERON:0001049,2.54e-11,56;UBERON:0005068,2.54e-11,56;UBERON:0006241,2.54e-11,56;UBERON:0007135,2.54e-11,56;UBERON:0000073,6.18e-11,53;UBERON:0002616,6.18e-11,53;UBERON:0000955,2.67e-09,68;UBERON:0006238,2.67e-09,68;UBERON:0001869,4.50e-09,32;UBERON:0001893,1.30e-08,34;UBERON:0003528,1.72e-08,34;UBERON:0002020,1.72e-08,34;UBERON:0002791,4.27e-08,32;UBERON:0002780,6.13e-08,41;UBERON:0001890,6.13e-08,41;UBERON:0003080,6.13e-08,41;UBERON:0006240,6.13e-08,41;UBERON:0003075,7.78e-08,82;UBERON:0007284,7.78e-08,82;UBERON:0001017,1.32e-07,81;UBERON:0002346,1.37e-07,86;UBERON:0002619,1.81e-07,22;UBERON:0000956,2.82e-07,25;UBERON:0000203,2.82e-07,25;UBERON:0001950,5.47e-07,20;UBERON:0001016,8.21e-07,89 | |||
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|short_description=p3@GCLM | |short_description=p3@GCLM | ||
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Latest revision as of 22:28, 19 September 2015
Short description: | p3@GCLM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GCLM_5end |
Coexpression cluster: | NA |
Association with transcript: | -132bp_to_NM_002061, uc001dqg.1_5end |
EntrezGene: | GCLM |
HGNC: | 4312 |
UniProt: | P48507 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.29e-20 | 53 |
common lymphoid progenitor | 1.29e-20 | 53 |
lymphoid lineage restricted progenitor cell | 1.76e-20 | 52 |
mature alpha-beta T cell | 2.19e-11 | 18 |
alpha-beta T cell | 2.19e-11 | 18 |
immature T cell | 2.19e-11 | 18 |
mature T cell | 2.19e-11 | 18 |
immature alpha-beta T cell | 2.19e-11 | 18 |
T cell | 3.33e-11 | 25 |
pro-T cell | 3.33e-11 | 25 |
lymphocyte of B lineage | 9.07e-09 | 24 |
pro-B cell | 9.07e-09 | 24 |
CD8-positive, alpha-beta T cell | 1.04e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.05e-19 | 114 |
neural tube | 2.54e-11 | 56 |
neural rod | 2.54e-11 | 56 |
future spinal cord | 2.54e-11 | 56 |
neural keel | 2.54e-11 | 56 |
regional part of nervous system | 6.18e-11 | 53 |
regional part of brain | 6.18e-11 | 53 |
brain | 2.67e-09 | 68 |
future brain | 2.67e-09 | 68 |
cerebral hemisphere | 4.50e-09 | 32 |
telencephalon | 1.30e-08 | 34 |
brain grey matter | 1.72e-08 | 34 |
gray matter | 1.72e-08 | 34 |
regional part of telencephalon | 4.27e-08 | 32 |
regional part of forebrain | 6.13e-08 | 41 |
forebrain | 6.13e-08 | 41 |
anterior neural tube | 6.13e-08 | 41 |
future forebrain | 6.13e-08 | 41 |
neural plate | 7.78e-08 | 82 |
presumptive neural plate | 7.78e-08 | 82 |
central nervous system | 1.32e-07 | 81 |
neurectoderm | 1.37e-07 | 86 |
regional part of cerebral cortex | 1.81e-07 | 22 |
cerebral cortex | 2.82e-07 | 25 |
pallium | 2.82e-07 | 25 |
neocortex | 5.47e-07 | 20 |
nervous system | 8.21e-07 | 89 |