FFCP PHASE1:Hg19::chrX:151619719..151619724,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2556 | |EntrezGene=2556 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4077 | |HGNC=4077 | ||
|TSSclassifier=strong | |||
|UniProt=P34903 | |UniProt=P34903 | ||
|association_with_transcript=105bp_to_ENST00000370314_5end | |association_with_transcript=105bp_to_ENST00000370314_5end | ||
|cluster_id=chrX:151619719..151619724,- | |||
|coexpression_cluster_id=C1303 | |||
|description=CAGE_peak_3_at_GABRA3_5end | |description=CAGE_peak_3_at_GABRA3_5end | ||
|id=chrX:151619719..151619724,- | |id=chrX:151619719..151619724,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000306;2.18e-08;4!CL:0002222;2.18e-08;4!CL:0002224;2.18e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,2.61e-08,4;CL:0002222,2.61e-08,4;CL:0002224,2.61e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.97e-70!57;UBERON:0005068!3.97e-70!57;UBERON:0006241!3.97e-70!57;UBERON:0007135!3.97e-70!57;UBERON:0001017!2.46e-63!82;UBERON:0002020!3.96e-61!34;UBERON:0003528!3.96e-61!34;UBERON:0001893!4.71e-61!34;UBERON:0005743!4.33e-60!86;UBERON:0001869!1.21e-59!32;UBERON:0002780!1.66e-59!41;UBERON:0001890!1.66e-59!41;UBERON:0006240!1.66e-59!41;UBERON:0002616!6.89e-59!59;UBERON:0002619!1.57e-58!22;UBERON:0003080!5.58e-58!42;UBERON:0003075!2.99e-57!86;UBERON:0007284!2.99e-57!86;UBERON:0002791!3.23e-57!33;UBERON:0001950!4.11e-57!20;UBERON:0000073!5.72e-57!94;UBERON:0001016!5.72e-57!94;UBERON:0000955!3.91e-56!69;UBERON:0006238!3.91e-56!69;UBERON:0002346!2.20e-54!90;UBERON:0000956!2.89e-51!25;UBERON:0000203!2.89e-51!25;UBERON:0003056!3.16e-45!61;UBERON:0000033!1.47e-37!123;UBERON:0000153!1.80e-35!129;UBERON:0007811!1.80e-35!129;UBERON:0007023!7.08e-34!115;UBERON:0004121!2.72e-32!169;UBERON:0000924!2.30e-31!173;UBERON:0006601!2.30e-31!173;UBERON:0000200!8.06e-27!6;UBERON:0001872!1.27e-22!5;UBERON:0001871!3.69e-19!7;UBERON:0000025!6.18e-17!194;UBERON:0000988!5.61e-14!3;UBERON:0002771!6.12e-14!3;UBERON:0002298!2.01e-13!8;UBERON:0003076!2.99e-13!15;UBERON:0003057!2.99e-13!15;UBERON:0004111!3.23e-13!241;UBERON:0000483!4.24e-12!309;UBERON:0000119!6.65e-12!312;UBERON:0000477!1.01e-11!286;UBERON:0002308!1.14e-11!9;UBERON:0000125!1.14e-11!9;UBERON:0000475!1.88e-11!365;UBERON:0000064!5.37e-11!219;UBERON:0001870!4.15e-10!2;UBERON:0000369!5.31e-10!4;UBERON:0002435!5.31e-10!4;UBERON:0000204!5.31e-10!4;UBERON:0010082!5.31e-10!4;UBERON:0002148!9.21e-10!2;UBERON:0009662!9.21e-10!2;UBERON:0002360!2.01e-09!2;UBERON:0000094!2.01e-09!2;UBERON:0007645!2.01e-09!2;UBERON:0004733!7.45e-09!12;UBERON:0002028!7.45e-09!12;UBERON:0007277!7.45e-09!12;UBERON:0000349!1.53e-08!5;UBERON:0002021!2.49e-08!5;UBERON:0004732!3.77e-08!13;UBERON:0002420!1.52e-07!9;UBERON:0007245!1.52e-07!9;UBERON:0010009!1.52e-07!9;UBERON:0010011!1.52e-07!9;UBERON:0000454!1.52e-07!9;UBERON:0000062!7.35e-07!511;UBERON:0006331!9.02e-07!3 | |ontology_enrichment_uberon=UBERON:0001049!3.97e-70!57;UBERON:0005068!3.97e-70!57;UBERON:0006241!3.97e-70!57;UBERON:0007135!3.97e-70!57;UBERON:0001017!2.46e-63!82;UBERON:0002020!3.96e-61!34;UBERON:0003528!3.96e-61!34;UBERON:0001893!4.71e-61!34;UBERON:0005743!4.33e-60!86;UBERON:0001869!1.21e-59!32;UBERON:0002780!1.66e-59!41;UBERON:0001890!1.66e-59!41;UBERON:0006240!1.66e-59!41;UBERON:0002616!6.89e-59!59;UBERON:0002619!1.57e-58!22;UBERON:0003080!5.58e-58!42;UBERON:0003075!2.99e-57!86;UBERON:0007284!2.99e-57!86;UBERON:0002791!3.23e-57!33;UBERON:0001950!4.11e-57!20;UBERON:0000073!5.72e-57!94;UBERON:0001016!5.72e-57!94;UBERON:0000955!3.91e-56!69;UBERON:0006238!3.91e-56!69;UBERON:0002346!2.20e-54!90;UBERON:0000956!2.89e-51!25;UBERON:0000203!2.89e-51!25;UBERON:0003056!3.16e-45!61;UBERON:0000033!1.47e-37!123;UBERON:0000153!1.80e-35!129;UBERON:0007811!1.80e-35!129;UBERON:0007023!7.08e-34!115;UBERON:0004121!2.72e-32!169;UBERON:0000924!2.30e-31!173;UBERON:0006601!2.30e-31!173;UBERON:0000200!8.06e-27!6;UBERON:0001872!1.27e-22!5;UBERON:0001871!3.69e-19!7;UBERON:0000025!6.18e-17!194;UBERON:0000988!5.61e-14!3;UBERON:0002771!6.12e-14!3;UBERON:0002298!2.01e-13!8;UBERON:0003076!2.99e-13!15;UBERON:0003057!2.99e-13!15;UBERON:0004111!3.23e-13!241;UBERON:0000483!4.24e-12!309;UBERON:0000119!6.65e-12!312;UBERON:0000477!1.01e-11!286;UBERON:0002308!1.14e-11!9;UBERON:0000125!1.14e-11!9;UBERON:0000475!1.88e-11!365;UBERON:0000064!5.37e-11!219;UBERON:0001870!4.15e-10!2;UBERON:0000369!5.31e-10!4;UBERON:0002435!5.31e-10!4;UBERON:0000204!5.31e-10!4;UBERON:0010082!5.31e-10!4;UBERON:0002148!9.21e-10!2;UBERON:0009662!9.21e-10!2;UBERON:0002360!2.01e-09!2;UBERON:0000094!2.01e-09!2;UBERON:0007645!2.01e-09!2;UBERON:0004733!7.45e-09!12;UBERON:0002028!7.45e-09!12;UBERON:0007277!7.45e-09!12;UBERON:0000349!1.53e-08!5;UBERON:0002021!2.49e-08!5;UBERON:0004732!3.77e-08!13;UBERON:0002420!1.52e-07!9;UBERON:0007245!1.52e-07!9;UBERON:0010009!1.52e-07!9;UBERON:0010011!1.52e-07!9;UBERON:0000454!1.52e-07!9;UBERON:0000062!7.35e-07!511;UBERON:0006331!9.02e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0002022;2.05e-29;1!UBERON:0007190;2.05e-29;1!UBERON:0002619;3.48e-20;22!UBERON:0000956;6.30e-18;25!UBERON:0000203;6.30e-18;25!UBERON:0001893;8.03e-18;34!UBERON:0001869;1.23e-17;32!UBERON:0001954;1.15e-15;2!UBERON:0003022;1.15e-15;2!UBERON:0002421;1.15e-15;2!UBERON:0002600;1.15e-15;2!UBERON:0002791;4.65e-13;32!UBERON:0001950;7.89e-13;20!UBERON:0002780;8.61e-13;41!UBERON:0001890;8.61e-13;41!UBERON:0003528;1.31e-12;34!UBERON:0002020;1.31e-12;34!UBERON:0000073;3.04e-09;53!UBERON:0002616;3.04e-09;53!UBERON:0010077;2.18e-08;4!UBERON:0005389;2.18e-08;4!UBERON:0000484;2.18e-08;4!UBERON:0000965;2.18e-08;4!UBERON:0001803;2.18e-08;4!UBERON:0000955;3.14e-07;68!UBERON:0000349;4.79e-07;5!UBERON:0001016;5.12e-07;83!UBERON:0001872;5.86e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002022,1.33e-29,1;UBERON:0007190,1.78e-29,1;UBERON:0001869,9.45e-22,32;UBERON:0001893,1.55e-20,34;UBERON:0002619,3.57e-20,22;UBERON:0000956,6.44e-18,25;UBERON:0000203,6.44e-18,25;UBERON:0002780,3.46e-17,41;UBERON:0001890,3.46e-17,41;UBERON:0003080,3.46e-17,41;UBERON:0006240,3.46e-17,41;UBERON:0003056,1.22e-16,61;UBERON:0001954,1.15e-15,2;UBERON:0003022,1.15e-15,2;UBERON:0002421,1.15e-15,2;UBERON:0002600,1.15e-15,2;UBERON:0000955,7.93e-15,68;UBERON:0006238,7.93e-15,68;UBERON:0002791,3.07e-14,32;UBERON:0000073,1.86e-13,53;UBERON:0002616,1.86e-13,53;UBERON:0003528,1.86e-13,34;UBERON:0002020,1.86e-13,34;UBERON:0001950,8.05e-13,20;UBERON:0001049,9.09e-13,56;UBERON:0005068,9.09e-13,56;UBERON:0006241,9.09e-13,56;UBERON:0007135,9.09e-13,56;UBERON:0001017,1.51e-12,81;UBERON:0003075,1.68e-12,82;UBERON:0007284,1.68e-12,82;UBERON:0002346,6.15e-12,86;UBERON:0001016,2.42e-11,89;UBERON:0010371,6.30e-10,104;UBERON:0010077,2.61e-08,4;UBERON:0005389,2.61e-08,4;UBERON:0000484,2.61e-08,4;UBERON:0002546,2.61e-08,4;UBERON:0000965,2.61e-08,4;UBERON:0001803,2.61e-08,4;UBERON:0003073,2.61e-08,4;UBERON:0005426,2.61e-08,4;UBERON:0004121,3.72e-08,171;UBERON:0000924,3.72e-08,171;UBERON:0006601,3.72e-08,171;UBERON:0010314,7.20e-08,132;UBERON:0000349,4.79e-07,5;UBERON:0001872,6.04e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38568906942791,0,0.160753148465019,0,0,0,0,1.82248669974074,0,0,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.854183854313742,0.3755727921195,0,0.110929051536852,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0,0.642292250964595,0,0.159633859057151,0.41023272848151,0,0.691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2832141077495,0.781078098613847,0.413373593002368,1.26831620387814,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.815636795721981,0.920818829879887,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33883824611688,0,0,0,0,0,0,0,0,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,1.22384682343646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38568906942791,0,0.160753148465019,0,0,0,0,1.82248669974074,0,0,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.854183854313742,0.3755727921195,0,0.110929051536852,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0,0.642292250964595,0,0.159633859057151,0.41023272848151,0,0.691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2832141077495,0.781078098613847,0.413373593002368,1.26831620387814,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.815636795721981,0.920818829879887,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33883824611688,0,0,0,0,0,0,0,0,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,1.22384682343646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@GABRA3 | |short_description=p3@GABRA3 | ||
}} | }} |
Latest revision as of 22:54, 19 September 2015
Short description: | p3@GABRA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GABRA3_5end |
Coexpression cluster: | C1303_hippocampus_pituitary_insula_medulla_medial_occipital_paracentral |
Association with transcript: | 105bp_to_ENST00000370314_5end |
EntrezGene: | GABRA3 |
HGNC: | 4077 |
UniProt: | P34903 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 2.61e-08 | 4 |
vertebrate lens cell | 2.61e-08 | 4 |
lens epithelial cell | 2.61e-08 | 4 |