FFCP PHASE1:Hg19::chr3:12200736..12200745,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7079 | |EntrezGene=7079 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11823 | |HGNC=11823 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-89bp_to_uc003bwo.2_5end | |association_with_transcript=-89bp_to_uc003bwo.2_5end | ||
|cluster_id=chr3:12200736..12200745,- | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_11_at_TIMP4_5end | |description=CAGE_peak_11_at_TIMP4_5end | ||
|id=chr3:12200736..12200745,- | |id=chr3:12200736..12200745,- | ||
|ontology_enrichment_celltype=CL:0000047!3.58e-07!8 | |ontology_enrichment_celltype=CL:0000047!3.58e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000047;8.10e-26;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.80e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.71e-66;3!UBERON:0005425;5.12e-50;1!UBERON:0003056;1.03e-17;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.11e-41!86;UBERON:0001017!2.70e-41!82;UBERON:0000073!3.16e-39!94;UBERON:0001016!3.16e-39!94;UBERON:0001049!3.41e-36!57;UBERON:0005068!3.41e-36!57;UBERON:0006241!3.41e-36!57;UBERON:0007135!3.41e-36!57;UBERON:0007023!3.33e-35!115;UBERON:0002346!3.93e-30!90;UBERON:0003075!1.81e-27!86;UBERON:0007284!1.81e-27!86;UBERON:0002616!1.32e-26!59;UBERON:0003076!2.16e-26!15;UBERON:0003057!2.16e-26!15;UBERON:0000955!7.46e-26!69;UBERON:0006238!7.46e-26!69;UBERON:0004732!1.04e-20!13;UBERON:0002020!1.34e-20!34;UBERON:0003528!1.34e-20!34;UBERON:0002298!1.95e-20!8;UBERON:0000924!5.41e-20!173;UBERON:0006601!5.41e-20!173;UBERON:0002791!1.09e-18!33;UBERON:0001893!4.73e-18!34;UBERON:0004121!4.98e-18!169;UBERON:0004733!1.05e-17!12;UBERON:0002028!1.05e-17!12;UBERON:0007277!1.05e-17!12;UBERON:0002780!1.34e-16!41;UBERON:0001890!1.34e-16!41;UBERON:0006240!1.34e-16!41;UBERON:0003080!4.03e-16!42;UBERON:0000153!2.07e-14!129;UBERON:0007811!2.07e-14!129;UBERON:0001869!3.15e-14!32;UBERON:0000033!3.67e-14!123;UBERON:0002308!9.31e-13!9;UBERON:0000125!9.31e-13!9;UBERON:0002619!9.84e-13!22;UBERON:0001896!7.90e-12!3;UBERON:0005290!7.90e-12!3;UBERON:0010096!7.90e-12!3;UBERON:0003056!2.16e-11!61;UBERON:0001950!2.42e-11!20;UBERON:0002240!2.50e-11!3;UBERON:0000956!4.97e-11!25;UBERON:0000203!4.97e-11!25;UBERON:0006331!1.15e-10!3;UBERON:0000988!2.55e-10!3;UBERON:0002680!2.07e-09!9;UBERON:0001895!2.07e-09!9;UBERON:0010092!2.07e-09!9;UBERON:0002420!2.80e-09!9;UBERON:0007245!2.80e-09!9;UBERON:0010009!2.80e-09!9;UBERON:0010011!2.80e-09!9;UBERON:0000454!2.80e-09!9;UBERON:0005162!3.09e-08!2;UBERON:0000122!3.09e-08!2;UBERON:0000025!3.66e-08!194;UBERON:0009663!8.16e-08!7;UBERON:0002148!1.60e-07!2;UBERON:0009662!1.60e-07!2;UBERON:0002360!2.02e-07!2;UBERON:0000094!2.02e-07!2;UBERON:0007645!2.02e-07!2;UBERON:0005174!6.10e-07!5;UBERON:0001137!6.10e-07!5;UBERON:0001872!9.27e-07!5;UBERON:0000349!9.46e-07!5 | |ontology_enrichment_uberon=UBERON:0005743!2.11e-41!86;UBERON:0001017!2.70e-41!82;UBERON:0000073!3.16e-39!94;UBERON:0001016!3.16e-39!94;UBERON:0001049!3.41e-36!57;UBERON:0005068!3.41e-36!57;UBERON:0006241!3.41e-36!57;UBERON:0007135!3.41e-36!57;UBERON:0007023!3.33e-35!115;UBERON:0002346!3.93e-30!90;UBERON:0003075!1.81e-27!86;UBERON:0007284!1.81e-27!86;UBERON:0002616!1.32e-26!59;UBERON:0003076!2.16e-26!15;UBERON:0003057!2.16e-26!15;UBERON:0000955!7.46e-26!69;UBERON:0006238!7.46e-26!69;UBERON:0004732!1.04e-20!13;UBERON:0002020!1.34e-20!34;UBERON:0003528!1.34e-20!34;UBERON:0002298!1.95e-20!8;UBERON:0000924!5.41e-20!173;UBERON:0006601!5.41e-20!173;UBERON:0002791!1.09e-18!33;UBERON:0001893!4.73e-18!34;UBERON:0004121!4.98e-18!169;UBERON:0004733!1.05e-17!12;UBERON:0002028!1.05e-17!12;UBERON:0007277!1.05e-17!12;UBERON:0002780!1.34e-16!41;UBERON:0001890!1.34e-16!41;UBERON:0006240!1.34e-16!41;UBERON:0003080!4.03e-16!42;UBERON:0000153!2.07e-14!129;UBERON:0007811!2.07e-14!129;UBERON:0001869!3.15e-14!32;UBERON:0000033!3.67e-14!123;UBERON:0002308!9.31e-13!9;UBERON:0000125!9.31e-13!9;UBERON:0002619!9.84e-13!22;UBERON:0001896!7.90e-12!3;UBERON:0005290!7.90e-12!3;UBERON:0010096!7.90e-12!3;UBERON:0003056!2.16e-11!61;UBERON:0001950!2.42e-11!20;UBERON:0002240!2.50e-11!3;UBERON:0000956!4.97e-11!25;UBERON:0000203!4.97e-11!25;UBERON:0006331!1.15e-10!3;UBERON:0000988!2.55e-10!3;UBERON:0002680!2.07e-09!9;UBERON:0001895!2.07e-09!9;UBERON:0010092!2.07e-09!9;UBERON:0002420!2.80e-09!9;UBERON:0007245!2.80e-09!9;UBERON:0010009!2.80e-09!9;UBERON:0010011!2.80e-09!9;UBERON:0000454!2.80e-09!9;UBERON:0005162!3.09e-08!2;UBERON:0000122!3.09e-08!2;UBERON:0000025!3.66e-08!194;UBERON:0009663!8.16e-08!7;UBERON:0002148!1.60e-07!2;UBERON:0009662!1.60e-07!2;UBERON:0002360!2.02e-07!2;UBERON:0000094!2.02e-07!2;UBERON:0007645!2.02e-07!2;UBERON:0005174!6.10e-07!5;UBERON:0001137!6.10e-07!5;UBERON:0001872!9.27e-07!5;UBERON:0000349!9.46e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;5.12e-50;1!UBERON:0001785;5.12e-50;1!UBERON:0002464;5.12e-50;1!UBERON:0004904;5.12e-50;1!UBERON:0001021;5.12e-50;1!UBERON:0004732;5.97e-35;13!UBERON:0002037;5.98e-34;6!UBERON:0003714;8.10e-26;2!UBERON:0005162;8.10e-26;2!UBERON:0000122;8.10e-26;2!UBERON:0002680;4.59e-23;9!UBERON:0001895;4.59e-23;9!UBERON:0004733;1.33e-17;12!UBERON:0002028;1.33e-17;12!UBERON:0001016;2.46e-07;83!UBERON:0000010;8.61e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.99e-50,1;UBERON:0001785,3.99e-50,1;UBERON:0002464,3.99e-50,1;UBERON:0004904,3.99e-50,1;UBERON:0001021,3.99e-50,1;UBERON:0003902,3.99e-50,1;UBERON:0005425,3.99e-50,1;UBERON:0004732,5.63e-35,13;UBERON:0002037,5.98e-34,6;UBERON:0006215,5.98e-34,6;UBERON:0003714,7.14e-26,2;UBERON:0005162,7.14e-26,2;UBERON:0000122,7.14e-26,2;UBERON:0002680,4.59e-23,9;UBERON:0001895,4.59e-23,9;UBERON:0010092,4.59e-23,9;UBERON:0004733,1.33e-17,12;UBERON:0002028,1.33e-17,12;UBERON:0007277,1.33e-17,12;UBERON:0003076,2.58e-14,15;UBERON:0003057,2.58e-14,15;UBERON:0001781,1.13e-13,4;UBERON:0000966,1.44e-09,6;UBERON:0005388,1.44e-09,6;UBERON:0001802,1.44e-09,6;UBERON:0001016,1.88e-09,89;UBERON:0000010,8.37e-07,8 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87506075821184,2.65992857058193,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0.160753148465019,0.275078873194468,0.415440338029185,0,0,0.242998226632099,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0.106787412567695,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0.573409195690071,0.887432412294818,0.745156835296601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.495743057036009,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.345786262321089,0.322951291263702,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.394636641377094,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0.20686599172379,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.562677665642051,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87506075821184,2.65992857058193,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0.160753148465019,0.275078873194468,0.415440338029185,0,0,0.242998226632099,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.26446520348538,0,0,0.106787412567695,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0.573409195690071,0.887432412294818,0.745156835296601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.495743057036009,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.345786262321089,0.322951291263702,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.394636641377094,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0.20686599172379,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p11@TIMP4 | |short_description=p11@TIMP4 | ||
}} | }} |
Latest revision as of 23:32, 19 September 2015
Short description: | p11@TIMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_TIMP4_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -89bp_to_uc003bwo.2_5end |
EntrezGene: | TIMP4 |
HGNC: | 11823 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.80e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.99e-50 | 1 |
cranial nerve | 3.99e-50 | 1 |
nerve trunk | 3.99e-50 | 1 |
nerve connecting eye with brain | 3.99e-50 | 1 |
nerve | 3.99e-50 | 1 |
retinal neural layer | 3.99e-50 | 1 |
presumptive neural retina | 3.99e-50 | 1 |
segmental subdivision of nervous system | 5.63e-35 | 13 |
cerebellum | 5.98e-34 | 6 |
rhombic lip | 5.98e-34 | 6 |
neural tissue | 7.14e-26 | 2 |
multi cell component structure | 7.14e-26 | 2 |
neuron projection bundle | 7.14e-26 | 2 |
regional part of metencephalon | 4.59e-23 | 9 |
metencephalon | 4.59e-23 | 9 |
future metencephalon | 4.59e-23 | 9 |
segmental subdivision of hindbrain | 1.33e-17 | 12 |
hindbrain | 1.33e-17 | 12 |
presumptive hindbrain | 1.33e-17 | 12 |
posterior neural tube | 2.58e-14 | 15 |
chordal neural plate | 2.58e-14 | 15 |
layer of retina | 1.13e-13 | 4 |
retina | 1.44e-09 | 6 |
photoreceptor array | 1.44e-09 | 6 |
posterior segment of eyeball | 1.44e-09 | 6 |
nervous system | 1.88e-09 | 89 |
peripheral nervous system | 8.37e-07 | 8 |