FFCP PHASE1:Hg19::chr9:118916063..118916077,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:118916063..118916077,+ to FFCP PHASE1:Hg19::chr9:118916063..118916077,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5069 | |EntrezGene=5069 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8602 | |HGNC=8602 | ||
|TSSclassifier=strong | |||
|UniProt=Q13219,Q7Z613,Q86YM8,Q8IWT8 | |UniProt=Q13219,Q7Z613,Q86YM8,Q8IWT8 | ||
|association_with_transcript=0bp_to_NM_002581,uc004bjn.2_5end | |||
|cluster_id=chr9:118916063..118916077,+ | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_2_at_PAPPA_5end | |||
|id=chr9:118916063..118916077,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.47e-39!180;CL:0000187!7.21e-30!54;CL:0000680!6.38e-29!57;CL:0000056!6.38e-29!57;CL:0000355!6.38e-29!57;CL:0000183!4.28e-27!59;CL:0000192!2.15e-26!42;CL:0000514!2.15e-26!42;CL:0000393!4.39e-25!60;CL:0000211!4.39e-25!60;CL:0000359!5.76e-23!32;CL:0000057!3.16e-22!75;CL:0002494!3.14e-12!16;CL:0000222!2.76e-11!119;CL:0000048!7.35e-09!430;CL:0002539!1.02e-08!10;CL:0002620!3.32e-08!23;CL:0000723!4.59e-08!436;CL:0000034!1.28e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.74e-28;32!CL:0000192;1.53e-22;43!CL:0000187;5.54e-20;55!CL:0000393;5.03e-16;61!CL:0000211;5.03e-16;61!CL:0002494;1.07e-15;16!CL:0002539;5.12e-11;10!CL:0000134;8.37e-09;55!CL:0000723;2.45e-08;61!CL:0000057;8.62e-08;73!CL:0000048;3.10e-07;58!CL:0002548;3.73e-07;6!CL:0002334;9.76e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,2.03e-36,55;CL:0000680,9.33e-35,58;CL:0000056,9.33e-35,58;CL:0000355,9.33e-35,58;CL:0000192,3.07e-32,43;CL:0000514,3.07e-32,43;CL:0000393,7.18e-31,61;CL:0000211,7.18e-31,61;CL:0000359,5.60e-30,32;CL:0000057,6.42e-20,76;CL:0000048,1.73e-16,427;CL:0002494,1.04e-15,16;CL:0000723,1.22e-15,433;CL:0000222,1.02e-14,121;CL:0000034,1.47e-14,441;CL:0002539,4.68e-11,10;CL:0002548,3.58e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000514;1.53e-22;43!CL:0000355;3.77e-18;58 | |||
|ontology_enrichment_disease=DOID:2394!2.57e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.56e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.65e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004290!3.20e-27!70;UBERON:0000914!1.96e-26!83;UBERON:0002329!1.96e-26!83;UBERON:0003077!1.96e-26!83;UBERON:0003059!1.96e-26!83;UBERON:0007282!1.96e-26!83;UBERON:0009618!1.96e-26!83;UBERON:0007285!1.96e-26!83;UBERON:0001134!2.52e-26!61;UBERON:0002036!2.52e-26!61;UBERON:0003082!2.52e-26!61;UBERON:0002385!2.38e-25!63;UBERON:0001015!2.38e-25!63;UBERON:0000383!2.38e-25!63;UBERON:0000486!2.88e-23!82;UBERON:0004872!7.72e-20!84;UBERON:0005256!2.83e-16!143;UBERON:0001637!6.02e-15!42;UBERON:0003509!6.02e-15!42;UBERON:0004572!6.02e-15!42;UBERON:0004573!7.97e-14!33;UBERON:0004571!7.97e-14!33;UBERON:0004535!2.57e-13!110;UBERON:0001009!2.98e-13!113;UBERON:0002049!7.86e-13!79;UBERON:0007798!7.86e-13!79;UBERON:0002100!1.28e-12!216;UBERON:0000948!2.05e-12!24;UBERON:0005498!2.05e-12!24;UBERON:0004140!2.05e-12!24;UBERON:0009881!2.05e-12!24;UBERON:0004141!2.05e-12!24;UBERON:0003084!2.05e-12!24;UBERON:0007005!2.05e-12!24;UBERON:0004139!2.05e-12!24;UBERON:0004291!2.05e-12!24;UBERON:0000490!9.69e-12!138;UBERON:0007100!1.29e-11!27;UBERON:0001981!1.33e-11!60;UBERON:0007500!1.33e-11!60;UBERON:0004537!1.33e-11!60;UBERON:0006965!1.33e-11!60;UBERON:0003914!5.63e-11!118;UBERON:0000481!2.38e-10!347;UBERON:0000475!3.00e-10!365;UBERON:0000055!5.83e-09!69;UBERON:0003104!8.63e-09!238;UBERON:0009142!8.63e-09!238;UBERON:0004237!1.02e-08!10;UBERON:0004695!1.02e-08!10;UBERON:0002111!1.02e-08!10;UBERON:0004178!1.02e-08!10;UBERON:0001135!1.03e-08!15;UBERON:0000119!1.88e-07!312;UBERON:0000483!1.91e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.63e-17;33!UBERON:0004571;4.63e-17;33!UBERON:0001637;2.80e-14;42!UBERON:0003509;2.80e-14;42!UBERON:0004572;2.80e-14;42!UBERON:0000948;3.45e-11;22!UBERON:0004237;5.12e-11;10!UBERON:0004695;5.12e-11;10!UBERON:0002111;5.12e-11;10!UBERON:0004178;5.12e-11;10!UBERON:0001135;1.52e-10;15!UBERON:0007100;3.88e-09;25!UBERON:0000947;5.43e-09;21!UBERON:0010191;5.43e-09;21!UBERON:0007500;8.07e-09;56!UBERON:0001981;8.07e-09;56!UBERON:0004537;8.07e-09;56!UBERON:0002385;8.08e-09;31!UBERON:0001015;8.08e-09;31!UBERON:0000383;8.08e-09;31!UBERON:0002049;1.73e-07;75!UBERON:0007798;1.73e-07;75!UBERON:0006876;4.56e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,3.27e-31,62;UBERON:0002036,3.27e-31,62;UBERON:0003082,3.27e-31,62;UBERON:0002385,1.29e-29,64;UBERON:0001015,1.29e-29,64;UBERON:0000383,1.29e-29,64;UBERON:0002329,1.36e-28,71;UBERON:0003059,1.36e-28,71;UBERON:0007282,1.36e-28,71;UBERON:0004290,1.36e-28,71;UBERON:0009618,1.36e-28,71;UBERON:0007524,3.13e-28,73;UBERON:0003077,6.53e-28,72;UBERON:0007285,6.53e-28,72;UBERON:0007503,4.28e-25,78;UBERON:0000486,2.76e-24,83;UBERON:0004872,2.98e-23,83;UBERON:0001637,3.09e-21,42;UBERON:0003509,3.09e-21,42;UBERON:0004572,3.09e-21,42;UBERON:0004573,3.41e-19,33;UBERON:0004571,3.41e-19,33;UBERON:0004535,8.82e-19,109;UBERON:0005256,2.61e-18,122;UBERON:0001009,1.01e-17,112;UBERON:0002049,2.23e-17,78;UBERON:0007798,2.23e-17,78;UBERON:0003104,1.08e-16,160;UBERON:0009142,1.08e-16,160;UBERON:0007500,5.86e-16,59;UBERON:0001981,5.86e-16,59;UBERON:0004537,5.86e-16,59;UBERON:0006965,5.86e-16,59;UBERON:0003914,3.92e-14,117;UBERON:0000490,9.49e-14,148;UBERON:0000948,3.18e-12,24;UBERON:0005498,3.18e-12,24;UBERON:0004140,3.18e-12,24;UBERON:0009881,3.18e-12,24;UBERON:0004141,3.18e-12,24;UBERON:0003084,3.18e-12,24;UBERON:0007005,3.18e-12,24;UBERON:0004139,3.18e-12,24;UBERON:0004291,3.18e-12,24;UBERON:0000055,4.10e-12,68;UBERON:0004237,4.68e-11,10;UBERON:0004695,4.68e-11,10;UBERON:0002111,4.68e-11,10;UBERON:0004178,4.68e-11,10;UBERON:0001135,1.49e-10,15;UBERON:0000926,2.27e-10,315;UBERON:0004120,2.27e-10,315;UBERON:0006603,2.27e-10,315;UBERON:0007100,3.95e-10,27;UBERON:0002100,9.81e-10,199;UBERON:0000947,5.56e-09,21;UBERON:0010191,5.56e-09,21;UBERON:0002204,4.40e-08,167;UBERON:0006876,5.14e-07,11 | |||
|phase1_expression=0.908391896352783,1.71280419112787,0.986680828671798,0,2.23480547213644,2.61701557230111,0,1.89515962028049,1.56711376919903,0.982935746006035,0,14.4171305605914,8.17677632508206,0.37129905888014,2.98257638155124,36.3055579083959,21.0943084808392,26.2911632539454,30.2518335250114,0,0,0,0.572471974262113,0.547497700291537,0.502170558379211,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,5.36560687762909,6.90457833955064,1.80719576192283,7.01873074890245,1.30361867064741,0,1.45990461090791,2.26883561193763,3.1042115644759,6.14843499851882,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,4.68532893158945,79.1806901263049,28.9704986956302,5.32002573297536,6.72813120170769,17.0798393167528,9.12669929143492,9.95875313279252,25.8644490373801,12.9134903459632,8.93008823105095,2.88087962239999,1.64025002283658,3.1216007683032,1.71141546463335,0.448346041655403,0.939475989150119,0.161872944368132,0.280901613404497,0.408308342509787,0,1.96318984233954,2.37600571456411,4.69807165629258,0,0.718618141816238,0,0,1.38532057742091,0.877955241761676,0.30648779579902,3.60571341375832,6.69249880644124,3.58779271377724,4.05759038755278,0.847727604638247,3.60109315301283,2.57631323096097,1.28820270022815,0.37223371266318,10.126579934476,1.55899208257918,9.84491719552046,3.03764665519588,2.58633690910099,4.26011511019937,0.906768884048762,0.339121184620975,0.386521706326594,0,1.14721838155602,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,12.5159625863853,0.643240938192885,0,6.03678306441573,5.0531563716871,0,0,0,0,0,0,0,0,0,0,8.41450642820675,2.8810180793198,4.41026134156626,0,0,0,0,0,17.4999166504496,0,0,0,0,3.58389135841357,7.27954349695705,5.77325368101093,2.08674728955138,65.6314600778243,0.144366447761074,0,0,0,0,0,0,0,0,0.503946384596579,2.41017665312057,0,0,0,0,0,0,0.288239906833923,0,0,0,0,0,0.205654985406647,0,0,0,0.43596006883328,0.07333828582095,2.97324946242889,0,0.845302752556,0.797814349754612,1.04007436911366,0,0,0,1.57275793023962,0,3.29296134712308,0.325736184293735,3.19852753868291,5.543663110534,9.04318131178758,6.97226766880235,8.89759621520308,0,0,0,3.35474797688216,2.29723871668228,0,0.144781306667579,0,1.25342674267927,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,3.92612773501248,1.00034104211935,1.89885516589815,13.1021642764408,12.6684582045985,8.04282316673067,5.15422225967938,0.601892199455438,0,0,0,0.737476674166813,1.04260337361699,0,0.343143423810856,0,0,0,0.303127571446259,1.66435439510497,0.907170879989041,0.744323423456331,18.4154367945675,3.08726103876381,3.33161788064823,1.02341449813341,3.53878626515936,2.96836132889982,1.07946785661859,2.30830242907065,2.79232330446951,5.19254429183621,3.37010097533882,0,0.200506470303285,0,3.09999010044438,1.27463817604702,2.49136388422906,0.451199612907412,0,0,0,0.316654886678627,0,0,0.647747748306418,0,0,1.00337954770971,0,0,0,0,0,0.512900250232778,0.328014645699706,0.325378394664303,158.064911867606,0,0,1.72279661398852,0,6.42735719376638,3.0934629853479,2.31072925671967,1.22802939780904,3.03240459465967,6.23037420235987,3.19036726611303,4.09087811597284,0.178064071293475,0,0,0,0,2.78907329578371,91.9252052745469,11.8496335927302,19.0980819709175,7.98459045475533,9.5692629128258,13.7139922136901,34.0637230445939,1.48863347743867,6.32758849437452,8.19709833872447,1.79128453917934,0.855877976067841,7.00047145437061,13.3441268833869,2.33834194858309,4.66712950551293,7.18655654308687,7.88511678135932,9.5106192703805,21.484181268188,0.48763373908959,7.55511817856982,7.39551027297288,3.68549760801562,5.79762271010222,1.13008116620243,10.4759415273764,14.5956574553068,15.3457809838817,2.89387767133344,1.31178950409327,17.856113172718,11.4634694296908,5.91560765317707,10.0387946542836,12.6741262906926,27.8203420155375,1.06428319221179,1.26664581178598,2.30506425071931,0,2.0996083214699,0,0,0,158.067441504212,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,4.81239927631679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,22.9194705348182,0.593929361665277,0,0,0,0.779160935160341,0,0,1.19548792950642,0,0,0.511343412510774,0,4.0435146396035,0,0.179021174675609,0,1.28236427328014,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,1.45802306691627,0,0,0,0,0,0,0,0,0,0.846452843541768,0.455768223388005,0,0,0,74.9652725370011,54.4089704807062,102.342676995578,0,0,0.498635045700469,0,0,0,0,0,0,0,0,0,0,0.884575645033392,3.66618086960175,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0.661983911750998,0,1.19472429772959,0,0.138674673013139,0,0,0,0,0.171986032471617,0.0967563312890851,0.0730893170861856,0,0.581934098930517,2.91245218081951,0.225980740780532,3.56309004081552,0.397429223405979,0,0,3.60714691131902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.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| ||
|short_description=p2@PAPPA | |||
}} | }} |
Latest revision as of 17:49, 24 September 2015
Short description: | p2@PAPPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PAPPA_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 0bp_to_NM_002581, uc004bjn.2_5end |
EntrezGene: | PAPPA |
HGNC: | 8602 |
UniProt: | Q13219Q7Z613Q86YM8Q8IWT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 2.03e-36 | 55 |
muscle precursor cell | 9.33e-35 | 58 |
myoblast | 9.33e-35 | 58 |
multi-potent skeletal muscle stem cell | 9.33e-35 | 58 |
smooth muscle cell | 3.07e-32 | 43 |
smooth muscle myoblast | 3.07e-32 | 43 |
electrically responsive cell | 7.18e-31 | 61 |
electrically active cell | 7.18e-31 | 61 |
vascular associated smooth muscle cell | 5.60e-30 | 32 |
fibroblast | 6.42e-20 | 76 |
multi fate stem cell | 1.73e-16 | 427 |
cardiocyte | 1.04e-15 | 16 |
somatic stem cell | 1.22e-15 | 433 |
mesodermal cell | 1.02e-14 | 121 |
stem cell | 1.47e-14 | 441 |
aortic smooth muscle cell | 4.68e-11 | 10 |
cardiac fibroblast | 3.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.65e-08 | 14 |