FFCP PHASE1:Hg19::chr5:140013241..140013270,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:140013241..140013270,- to FFCP PHASE1:Hg19::chr5:140013241..140013270,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=929 | |EntrezGene=929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1628 | |HGNC=1628 | ||
|TSSclassifier=strong | |||
|UniProt=E7EVL5 | |UniProt=E7EVL5 | ||
|association_with_transcript=0bp_to_ENST00000519715,uc003lgj.1_5end | |||
|cluster_id=chr5:140013241..140013270,- | |||
|coexpression_cluster_id=C294 | |||
|description=CAGE_peak_3_at_CD14_5end | |||
|id=chr5:140013241..140013270,- | |||
|ontology_enrichment_celltype=CL:0000766!3.21e-53!76;CL:0002057!3.78e-48!42;CL:0002194!9.58e-45!63;CL:0000576!9.58e-45!63;CL:0000040!9.58e-45!63;CL:0000559!9.58e-45!63;CL:0002009!2.86e-44!65;CL:0000860!9.15e-44!45;CL:0000557!6.72e-43!71;CL:0000839!2.37e-42!70;CL:0000763!1.18e-30!112;CL:0000049!1.18e-30!112;CL:0000738!8.40e-28!140;CL:0002087!5.13e-23!119;CL:0002031!3.10e-21!124;CL:0000037!7.37e-19!172;CL:0000566!7.37e-19!172;CL:0002032!4.63e-18!165;CL:0000837!4.63e-18!165;CL:0000988!1.50e-16!182;CL:0002393!1.50e-10!9;CL:0002397!1.50e-10!9;CL:0000094!2.39e-10!8;CL:0000081!6.44e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.64e-53;33!CL:0002057;6.64e-53;33!CL:0000473;7.21e-53;39!CL:0000234;7.21e-53;39!CL:0000576;2.14e-46;48!CL:0000766;5.21e-37;69!CL:0000763;1.16e-16;100!CL:0000094;1.22e-14;8!CL:0002087;1.54e-13;104!CL:0000235;7.56e-12;6!CL:0002393;2.20e-11;6!CL:0002397;2.20e-11;6!CL:0000738;2.73e-10;136!CL:0000081;3.57e-10;11!CL:0002619;1.67e-07;3!CL:0000775;6.32e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.14e-83,48;CL:0000234,2.14e-83,48;CL:0000766,1.63e-80,72;CL:0002194,1.24e-73,59;CL:0000576,1.24e-73,59;CL:0000040,1.24e-73,59;CL:0000559,1.24e-73,59;CL:0000860,1.47e-72,42;CL:0002057,1.47e-72,42;CL:0002009,1.05e-70,61;CL:0000839,3.68e-64,66;CL:0000557,5.74e-63,67;CL:0000763,1.17e-47,108;CL:0000049,1.17e-47,108;CL:0000738,1.52e-44,136;CL:0002087,1.23e-40,115;CL:0002031,1.49e-33,120;CL:0000037,2.39e-32,168;CL:0002032,1.17e-30,161;CL:0000837,1.17e-30,161;CL:0000988,1.00e-29,177;CL:0002393,3.30e-15,9;CL:0002397,3.30e-15,9;CL:0000094,6.68e-15,8;CL:0000235,8.93e-12,6;CL:0000081,2.35e-10,11;CL:0002619,1.66e-07,3;CL:0000775,6.28e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.19e-51;42!CL:0000049;5.39e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.23e-48!115;UBERON:0002390!3.49e-46!102;UBERON:0003061!3.49e-46!102;UBERON:0002193!1.58e-42!112;UBERON:0002371!1.03e-35!80;UBERON:0001474!8.80e-32!86;UBERON:0002405!2.96e-26!115;UBERON:0004765!4.09e-26!101;UBERON:0001434!4.09e-26!101;UBERON:0003081!7.61e-18!216;UBERON:0002204!9.11e-13!167;UBERON:0001049!7.08e-12!57;UBERON:0005068!7.08e-12!57;UBERON:0006241!7.08e-12!57;UBERON:0007135!7.08e-12!57;UBERON:0000062!8.83e-11!511;UBERON:0000178!2.20e-10!15;UBERON:0000179!2.20e-10!15;UBERON:0000463!2.20e-10!15;UBERON:0002616!2.62e-09!59;UBERON:0000467!3.19e-09!625;UBERON:0000480!3.87e-09!626;UBERON:0001017!6.13e-09!82;UBERON:0005743!9.84e-09!86;UBERON:0000922!2.76e-08!612;UBERON:0000923!3.36e-08!604;UBERON:0005291!3.36e-08!604;UBERON:0006598!3.36e-08!604;UBERON:0002532!3.36e-08!604;UBERON:0002050!4.03e-08!605;UBERON:0005423!4.03e-08!605;UBERON:0000955!6.50e-08!69;UBERON:0006238!6.50e-08!69;UBERON:0003075!9.87e-08!86;UBERON:0007284!9.87e-08!86;UBERON:0000468!1.02e-07!659;UBERON:0002780!1.09e-07!41;UBERON:0001890!1.09e-07!41;UBERON:0006240!1.09e-07!41;UBERON:0000073!1.45e-07!94;UBERON:0001016!1.45e-07!94;UBERON:0002020!1.95e-07!34;UBERON:0003528!1.95e-07!34;UBERON:0001893!2.21e-07!34;UBERON:0003080!2.29e-07!42;UBERON:0002346!5.67e-07!90;UBERON:0002791!6.02e-07!33;UBERON:0000479!8.08e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.12e-15;15!UBERON:0000179;1.12e-15;15!UBERON:0000463;1.12e-15;15!UBERON:0002390;1.33e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.52e-67,98;UBERON:0003061,3.52e-67,98;UBERON:0002193,2.83e-61,108;UBERON:0002371,1.23e-53,76;UBERON:0001474,1.49e-48,82;UBERON:0002405,2.17e-46,93;UBERON:0004765,7.94e-43,90;UBERON:0001434,1.49e-38,100;UBERON:0003081,1.50e-28,203;UBERON:0007023,5.25e-19,114;UBERON:0002204,9.23e-18,167;UBERON:0000178,1.16e-15,15;UBERON:0000179,1.16e-15,15;UBERON:0000463,1.16e-15,15;UBERON:0000926,2.90e-15,315;UBERON:0004120,2.90e-15,315;UBERON:0006603,2.90e-15,315;UBERON:0000923,8.33e-09,560;UBERON:0010316,8.33e-09,560;UBERON:0005291,8.33e-09,560;UBERON:0006598,8.33e-09,560;UBERON:0010317,8.33e-09,560;UBERON:0002532,8.33e-09,560;UBERON:0002050,1.42e-08,564;UBERON:0005423,4.50e-08,581;UBERON:0000922,1.77e-07,592 | |||
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| ||
|short_description=p3@CD14 | |||
}} | }} |
Latest revision as of 02:29, 25 September 2015
Short description: | p3@CD14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CD14_5end |
Coexpression cluster: | C294_CD14_Macrophage_Monocytederived_CD14CD16_Neutrophils_Basophils_Peripheral |
Association with transcript: | 0bp_to_ENST00000519715, uc003lgj.1_5end |
EntrezGene: | CD14 |
HGNC: | 1628 |
UniProt: | E7EVL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.14e-83 | 48 |
phagocyte | 2.14e-83 | 48 |
myeloid leukocyte | 1.63e-80 | 72 |
monopoietic cell | 1.24e-73 | 59 |
monocyte | 1.24e-73 | 59 |
monoblast | 1.24e-73 | 59 |
promonocyte | 1.24e-73 | 59 |
classical monocyte | 1.47e-72 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.47e-72 | 42 |
macrophage dendritic cell progenitor | 1.05e-70 | 61 |
myeloid lineage restricted progenitor cell | 3.68e-64 | 66 |
granulocyte monocyte progenitor cell | 5.74e-63 | 67 |
myeloid cell | 1.17e-47 | 108 |
common myeloid progenitor | 1.17e-47 | 108 |
leukocyte | 1.52e-44 | 136 |
nongranular leukocyte | 1.23e-40 | 115 |
hematopoietic lineage restricted progenitor cell | 1.49e-33 | 120 |
hematopoietic stem cell | 2.39e-32 | 168 |
hematopoietic oligopotent progenitor cell | 1.17e-30 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-30 | 161 |
hematopoietic cell | 1.00e-29 | 177 |
intermediate monocyte | 3.30e-15 | 9 |
CD14-positive, CD16-positive monocyte | 3.30e-15 | 9 |
granulocyte | 6.68e-15 | 8 |
macrophage | 8.93e-12 | 6 |
blood cell | 2.35e-10 | 11 |
adult endothelial progenitor cell | 1.66e-07 | 3 |
neutrophil | 6.28e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.52e-67 | 98 |
blood island | 3.52e-67 | 98 |
hemolymphoid system | 2.83e-61 | 108 |
bone marrow | 1.23e-53 | 76 |
bone element | 1.49e-48 | 82 |
immune system | 2.17e-46 | 93 |
skeletal element | 7.94e-43 | 90 |
skeletal system | 1.49e-38 | 100 |
lateral plate mesoderm | 1.50e-28 | 203 |
adult organism | 5.25e-19 | 114 |
musculoskeletal system | 9.23e-18 | 167 |
blood | 1.16e-15 | 15 |
haemolymphatic fluid | 1.16e-15 | 15 |
organism substance | 1.16e-15 | 15 |
mesoderm | 2.90e-15 | 315 |
mesoderm-derived structure | 2.90e-15 | 315 |
presumptive mesoderm | 2.90e-15 | 315 |
germ layer | 8.33e-09 | 560 |
germ layer / neural crest | 8.33e-09 | 560 |
embryonic tissue | 8.33e-09 | 560 |
presumptive structure | 8.33e-09 | 560 |
germ layer / neural crest derived structure | 8.33e-09 | 560 |
epiblast (generic) | 8.33e-09 | 560 |
embryonic structure | 1.42e-08 | 564 |
developing anatomical structure | 4.50e-08 | 581 |
embryo | 1.77e-07 | 592 |