FFCP PHASE1:Hg19::chr8:114449458..114449469,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=114788 | |EntrezGene=114788 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19291 | |HGNC=19291 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z407 | |UniProt=Q7Z407 | ||
|association_with_transcript=-130bp_to_ENST00000297405_5end | |||
|cluster_id=chr8:114449458..114449469,- | |||
|coexpression_cluster_id=C2913 | |||
|description=CAGE_peak_8_at_CSMD3_5end | |||
|id=chr8:114449458..114449469,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002553;2.78e-26;1!CL:0000047;1.14e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,2.78e-26,1 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.47e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;2.15e-26;1!DOID:4549;2.15e-26;1!DOID:5861;2.15e-26;1!DOID:6496;2.15e-26;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.16e-26,1;DOID:4549,2.16e-26,1;DOID:5861,2.16e-26,1;DOID:6496,2.16e-26,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.14e-76!57;UBERON:0005068!5.14e-76!57;UBERON:0006241!5.14e-76!57;UBERON:0007135!5.14e-76!57;UBERON:0002780!3.16e-71!41;UBERON:0001890!3.16e-71!41;UBERON:0006240!3.16e-71!41;UBERON:0003080!2.24e-69!42;UBERON:0002616!4.81e-69!59;UBERON:0000955!4.45e-60!69;UBERON:0006238!4.45e-60!69;UBERON:0001893!6.27e-60!34;UBERON:0002346!4.09e-59!90;UBERON:0001017!1.62e-58!82;UBERON:0002791!5.50e-57!33;UBERON:0003075!4.14e-56!86;UBERON:0007284!4.14e-56!86;UBERON:0005743!2.18e-55!86;UBERON:0002020!2.95e-55!34;UBERON:0003528!2.95e-55!34;UBERON:0001869!1.77e-54!32;UBERON:0000073!2.71e-49!94;UBERON:0001016!2.71e-49!94;UBERON:0003056!1.47e-45!61;UBERON:0002619!2.12e-44!22;UBERON:0001950!1.51e-43!20;UBERON:0000956!1.01e-38!25;UBERON:0000203!1.01e-38!25;UBERON:0007023!6.98e-37!115;UBERON:0000033!9.00e-32!123;UBERON:0000924!3.25e-30!173;UBERON:0006601!3.25e-30!173;UBERON:0000153!7.23e-30!129;UBERON:0007811!7.23e-30!129;UBERON:0004121!6.41e-28!169;UBERON:0002420!8.52e-24!9;UBERON:0007245!8.52e-24!9;UBERON:0010009!8.52e-24!9;UBERON:0010011!8.52e-24!9;UBERON:0000454!8.52e-24!9;UBERON:0001871!1.50e-20!7;UBERON:0002308!8.42e-18!9;UBERON:0000125!8.42e-18!9;UBERON:0009663!2.97e-17!7;UBERON:0000025!4.39e-17!194;UBERON:0000200!8.20e-14!6;UBERON:0004111!8.60e-13!241;UBERON:0001894!2.46e-12!7;UBERON:0006222!2.46e-12!7;UBERON:0000349!6.93e-12!5;UBERON:0001872!2.11e-11!5;UBERON:0002021!4.01e-11!5;UBERON:0000064!4.56e-11!219;UBERON:0002771!1.32e-10!3;UBERON:0000483!4.23e-10!309;UBERON:0000477!4.85e-10!286;UBERON:0000119!6.59e-10!312;UBERON:0003076!7.55e-10!15;UBERON:0003057!7.55e-10!15;UBERON:0002298!7.66e-10!8;UBERON:0004733!2.80e-09!12;UBERON:0002028!2.80e-09!12;UBERON:0007277!2.80e-09!12;UBERON:0000475!7.97e-09!365;UBERON:0000369!8.17e-09!4;UBERON:0002435!8.17e-09!4;UBERON:0000204!8.17e-09!4;UBERON:0010082!8.17e-09!4;UBERON:0004732!1.63e-08!13;UBERON:0001876!1.95e-08!2;UBERON:0001897!3.09e-08!2;UBERON:0001875!1.35e-07!2;UBERON:0006514!1.35e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;3.24e-19;20!UBERON:0002619;1.36e-17;22!UBERON:0000956;1.26e-15;25!UBERON:0000203;1.26e-15;25!UBERON:0001871;4.37e-15;6!UBERON:0001876;1.14e-13;2!UBERON:0002791;1.46e-11;32!UBERON:0001869;2.13e-11;32!UBERON:0003528;5.22e-11;34!UBERON:0002020;5.22e-11;34!UBERON:0001893;6.64e-10;34!UBERON:0001016;9.05e-10;83!UBERON:0002418;1.01e-09;3!UBERON:0004755;1.01e-09;3!UBERON:0002780;1.69e-08;41!UBERON:0001890;1.69e-08;41!UBERON:0000073;2.08e-08;53!UBERON:0002616;2.08e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,3.24e-19,20;UBERON:0002619,1.36e-17,22;UBERON:0000956,1.27e-15,25;UBERON:0000203,1.27e-15,25;UBERON:0001871,4.37e-15,6;UBERON:0001876,8.28e-14,2;UBERON:0002791,2.05e-12,32;UBERON:0001869,2.05e-12,32;UBERON:0003528,9.91e-12,34;UBERON:0002020,9.91e-12,34;UBERON:0001893,9.91e-12,34;UBERON:0000073,1.11e-11,53;UBERON:0002616,1.11e-11,53;UBERON:0001049,4.42e-11,56;UBERON:0005068,4.42e-11,56;UBERON:0006241,4.42e-11,56;UBERON:0007135,4.42e-11,56;UBERON:0001017,8.24e-11,81;UBERON:0002780,7.57e-10,41;UBERON:0001890,7.57e-10,41;UBERON:0003080,7.57e-10,41;UBERON:0006240,7.57e-10,41;UBERON:0001016,9.27e-10,89;UBERON:0002418,1.01e-09,3;UBERON:0004755,1.01e-09,3;UBERON:0000955,4.61e-09,68;UBERON:0006238,4.61e-09,68;UBERON:0003075,1.14e-07,82;UBERON:0007284,1.14e-07,82;UBERON:0002346,2.53e-07,86;UBERON:0003056,8.65e-07,61 | |||
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| ||
|short_description=p8@CSMD3 | |||
}} | }} |
Latest revision as of 05:38, 25 September 2015
Short description: | p8@CSMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CSMD3_5end |
Coexpression cluster: | C2913_extraskeletal_nonsmall_chronic_parietal_occipital_putamen_duodenum |
Association with transcript: | -130bp_to_ENST00000297405_5end |
EntrezGene: | CSMD3 |
HGNC: | 19291 |
UniProt: | Q7Z407 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 2.78e-26 | 1 |
Ontology term | p-value | n |
---|---|---|
neocortex | 3.24e-19 | 20 |
regional part of cerebral cortex | 1.36e-17 | 22 |
cerebral cortex | 1.27e-15 | 25 |
pallium | 1.27e-15 | 25 |
temporal lobe | 4.37e-15 | 6 |
amygdala | 8.28e-14 | 2 |
regional part of telencephalon | 2.05e-12 | 32 |
cerebral hemisphere | 2.05e-12 | 32 |
brain grey matter | 9.91e-12 | 34 |
gray matter | 9.91e-12 | 34 |
telencephalon | 9.91e-12 | 34 |
regional part of nervous system | 1.11e-11 | 53 |
regional part of brain | 1.11e-11 | 53 |
neural tube | 4.42e-11 | 56 |
neural rod | 4.42e-11 | 56 |
future spinal cord | 4.42e-11 | 56 |
neural keel | 4.42e-11 | 56 |
central nervous system | 8.24e-11 | 81 |
regional part of forebrain | 7.57e-10 | 41 |
forebrain | 7.57e-10 | 41 |
anterior neural tube | 7.57e-10 | 41 |
future forebrain | 7.57e-10 | 41 |
nervous system | 9.27e-10 | 89 |
cartilage tissue | 1.01e-09 | 3 |
skeletal tissue | 1.01e-09 | 3 |
brain | 4.61e-09 | 68 |
future brain | 4.61e-09 | 68 |
neural plate | 1.14e-07 | 82 |
presumptive neural plate | 1.14e-07 | 82 |
neurectoderm | 2.53e-07 | 86 |
pre-chordal neural plate | 8.65e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.16e-26 | 1 |
extraosseous chondrosarcoma | 2.16e-26 | 1 |
myxoid chondrosarcoma | 2.16e-26 | 1 |
extraskeletal myxoid chondrosarcoma | 2.16e-26 | 1 |