FFCP PHASE1:Mm9::chr9:103965706..103965745,+: Difference between revisions
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{{FFCP|EntrezGene=102632|HGNC=|MCL_coexpression_id=60|UniProt=D3YTQ5|association_with_transcript=0bp_to_ENSMUST00000120854_5end|description=CAGE_peak_3_at_Acad11_5end|id=chr9:103965706..103965745,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.30e-14!52;UBERON:0005068!2.30e-14!52;UBERON:0006241!2.30e-14!52;UBERON:0007135!2.30e-14!52;UBERON:0000033!4.59e-14!63;UBERON:0000955!2.18e-13!50;UBERON:0006238!2.18e-13!50;UBERON:0002616!8.06e-13!49;UBERON:0004111!2.72e-12!122;UBERON:0002346!9.42e-12!71;UBERON:0003075!9.42e-12!71;UBERON:0007284!9.42e-12!71;UBERON:0000025!1.97e-11!114;UBERON:0001017!1.12e-10!73;UBERON:0005743!1.12e-10!73;UBERON:0003056!1.62e-10!49;UBERON:0003080!3.32e-10!40;UBERON:0002020!4.00e-10!34;UBERON:0004121!7.14e-10!102;UBERON:0000924!7.14e-10!102;UBERON:0006601!7.14e-10!102;UBERON:0000073!9.52e-10!75;UBERON:0001016!9.52e-10!75;UBERON:0002780!1.09e-09!39;UBERON:0001890!1.09e-09!39;UBERON:0006240!1.09e-09!39;UBERON:0002791!3.66e-08!29;UBERON:0003528!3.66e-08!29;UBERON:0001893!3.66e-08!29;UBERON:0000468!4.69e-08!333;UBERON:0002021!8.40e-08!10;UBERON:0000411!8.40e-08!10;UBERON:0001950!8.40e-08!10;UBERON:0007811!3.29e-07!86;UBERON:0002619!4.80e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.88e-16,92;UBERON:0000073,3.97e-15,54;UBERON:0001049,1.58e-14,52;UBERON:0005068,1.58e-14,52;UBERON:0006241,1.58e-14,52;UBERON:0007135,1.58e-14,52;UBERON:0002346,4.07e-13,64;UBERON:0003075,4.07e-13,64;UBERON:0007284,4.07e-13,64;UBERON:0010371,1.72e-12,73;UBERON:0000955,2.29e-12,47;UBERON:0006238,2.29e-12,47;UBERON:0004111,6.61e-12,122;UBERON:0002616,8.81e-12,46;UBERON:0000025,4.18e-11,114;UBERON:0001017,9.15e-11,73;UBERON:0003056,2.06e-10,49;UBERON:0003080,2.66e-10,40;UBERON:0004121,3.14e-10,95;UBERON:0000924,3.14e-10,95;UBERON:0006601,3.14e-10,95;UBERON:0002020,3.54e-10,34;UBERON:0001016,7.76e-10,75;UBERON:0002780,9.27e-10,39;UBERON:0001890,9.27e-10,39;UBERON:0006240,9.27e-10,39;UBERON:0002021,2.89e-08,10;UBERON:0000411,2.89e-08,10;UBERON:0001950,2.89e-08,10;UBERON:0003528,4.20e-08,29;UBERON:0002791,4.20e-08,29;UBERON:0001893,4.20e-08,29;UBERON:0002619,2.59e-07,17|phase1_expression=2.08193501236232,0.348975407639361,0.454999239389536,0.30246421130683,0.500895729946347,0.33575854382378,0.700837921786577,0.645616617207881,0.281577444303333,0.468129052643987,0.513653904676515,0.478632953972018,0.513602189793617,0.699363219351979,0,0.809901069559304,0,0.315462165358238,0.137114433605739,0.84877930359606,5.6128571499706,0.198581902401771,0,1.11994695955385,0.22940928106717,0,0,0.215471232685889,0.570070258369122,0.756090389279792,0.443461021310609,1.27006134691926,1.84519436275371,0,1.44425809875637,0,0.816677425049476,0,0,0,0,0,0,1.25896817975577,1.01376931219515,1.10128051297009,0.782391344348039,1.96222640742402,0.659058548203415,1.36100929351998,0.839918529752175,1.43752564364972,0.335565212115473,0,0,0.514518872071894,0.286533439938757,0.515672092277442,2.42779753031517,1.5869729378161,2.53532561402472,0,0,0,0,0,0.898800331555214,1.53687322128622,0.725827286159344,0.540023753326763,0.841299845405528,4.57041575046086,5.07997644188711,1.95985278743926,1.34183659425531,1.83843757322004,2.20231761998777,3.95830748064082,4.30098293117482,2.63772575460388,3.93396867490361,3.64639359389732,3.90856198601933,1.12552522006336,4.5839474333043,4.12480019663135,4.12877874317399,2.42319279572891,0.454357159999104,0.453429360640713,0.289864488701678,0,1.3599426674155,1.07940638327563,1.29955283489534,4.03224198387602,2.24711072210803,0.852151612890289,0.259786004602869,0,0.704217098883403,0,0,7.11066703153331,0.649473123033642,0,0.505524445014783,2.51204535381932,1.29468941823586,1.48442139064825,0.693941307064543,0.913396434936424,0.922461989024234,1.80867168663147,2.11659672844269,0.753999547978053,0.247194967734374,4.33798070759735,0,3.23533699894818,2.20841518460394,1.45462575940567,1.86391761218122,8.19786231632332,4.60782754989601,0.766371165625774,0.11981512450592,1.19980546198682,0.762421362438388,9.28701964309901,10.980014467647,3.39266750704734,7.82209440865244,8.95004100656157,8.93488591606108,6.48965052271031,1.32391173005411,1.49288364732112,2.52722758433675,2.10441855886474,0.910843100738926,1.37941262660084,1.98068342785884,1.05493372485001,1.76894897793452,1.92170580427275,2.06143794031403,5.95017752699736,0.646703978798527,0.756424320671277,1.75951124163949,1.7535658594206,0.556094498451196,1.39300866608867,1.02891068203972,1.19420560091096,1.40442637462647,1.54408744268829,0.852490498186778,2.89976081549703,3.75241695969754,1.62055855314913,3.07768156260773,4.9191057936851,3.39387648352232,3.0229412817553,5.09719462659276,4.67061369468678,10.0381508447223,9.68588038066662,10.2146700027778,9.64919917007193,13.173006917463,8.85762363818454,11.1453672738987,2.98423375899925,0,1.32225283331772,0.426576501070468,0.464473343720877,0.902072229254653,2.42020229548011,2.00140239460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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=102632 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=D3YTQ5 | |||
|association_with_transcript=0bp_to_ENSMUST00000120854_5end | |||
|cluster_id=chr9:103965706..103965745,+ | |||
|description=CAGE_peak_3_at_Acad11_5end | |||
|id=chr9:103965706..103965745,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.30e-14!52;UBERON:0005068!2.30e-14!52;UBERON:0006241!2.30e-14!52;UBERON:0007135!2.30e-14!52;UBERON:0000033!4.59e-14!63;UBERON:0000955!2.18e-13!50;UBERON:0006238!2.18e-13!50;UBERON:0002616!8.06e-13!49;UBERON:0004111!2.72e-12!122;UBERON:0002346!9.42e-12!71;UBERON:0003075!9.42e-12!71;UBERON:0007284!9.42e-12!71;UBERON:0000025!1.97e-11!114;UBERON:0001017!1.12e-10!73;UBERON:0005743!1.12e-10!73;UBERON:0003056!1.62e-10!49;UBERON:0003080!3.32e-10!40;UBERON:0002020!4.00e-10!34;UBERON:0004121!7.14e-10!102;UBERON:0000924!7.14e-10!102;UBERON:0006601!7.14e-10!102;UBERON:0000073!9.52e-10!75;UBERON:0001016!9.52e-10!75;UBERON:0002780!1.09e-09!39;UBERON:0001890!1.09e-09!39;UBERON:0006240!1.09e-09!39;UBERON:0002791!3.66e-08!29;UBERON:0003528!3.66e-08!29;UBERON:0001893!3.66e-08!29;UBERON:0000468!4.69e-08!333;UBERON:0002021!8.40e-08!10;UBERON:0000411!8.40e-08!10;UBERON:0001950!8.40e-08!10;UBERON:0007811!3.29e-07!86;UBERON:0002619!4.80e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.88e-16,92;UBERON:0000073,3.97e-15,54;UBERON:0001049,1.58e-14,52;UBERON:0005068,1.58e-14,52;UBERON:0006241,1.58e-14,52;UBERON:0007135,1.58e-14,52;UBERON:0002346,4.07e-13,64;UBERON:0003075,4.07e-13,64;UBERON:0007284,4.07e-13,64;UBERON:0010371,1.72e-12,73;UBERON:0000955,2.29e-12,47;UBERON:0006238,2.29e-12,47;UBERON:0004111,6.61e-12,122;UBERON:0002616,8.81e-12,46;UBERON:0000025,4.18e-11,114;UBERON:0001017,9.15e-11,73;UBERON:0003056,2.06e-10,49;UBERON:0003080,2.66e-10,40;UBERON:0004121,3.14e-10,95;UBERON:0000924,3.14e-10,95;UBERON:0006601,3.14e-10,95;UBERON:0002020,3.54e-10,34;UBERON:0001016,7.76e-10,75;UBERON:0002780,9.27e-10,39;UBERON:0001890,9.27e-10,39;UBERON:0006240,9.27e-10,39;UBERON:0002021,2.89e-08,10;UBERON:0000411,2.89e-08,10;UBERON:0001950,2.89e-08,10;UBERON:0003528,4.20e-08,29;UBERON:0002791,4.20e-08,29;UBERON:0001893,4.20e-08,29;UBERON:0002619,2.59e-07,17 | |||
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| |||
|short_description=p3@Acad11 | |||
}} |
Latest revision as of 02:17, 26 September 2015
Short description: | p3@Acad11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Acad11_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000120854_5end |
EntrezGene: | Acad11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.88e-16 | 92 |
regional part of nervous system | 3.97e-15 | 54 |
neural tube | 1.58e-14 | 52 |
neural rod | 1.58e-14 | 52 |
future spinal cord | 1.58e-14 | 52 |
neural keel | 1.58e-14 | 52 |
neurectoderm | 4.07e-13 | 64 |
neural plate | 4.07e-13 | 64 |
presumptive neural plate | 4.07e-13 | 64 |
ecto-epithelium | 1.72e-12 | 73 |
brain | 2.29e-12 | 47 |
future brain | 2.29e-12 | 47 |
anatomical conduit | 6.61e-12 | 122 |
regional part of brain | 8.81e-12 | 46 |
tube | 4.18e-11 | 114 |
central nervous system | 9.15e-11 | 73 |
pre-chordal neural plate | 2.06e-10 | 49 |
anterior neural tube | 2.66e-10 | 40 |
ectoderm-derived structure | 3.14e-10 | 95 |
ectoderm | 3.14e-10 | 95 |
presumptive ectoderm | 3.14e-10 | 95 |
gray matter | 3.54e-10 | 34 |
nervous system | 7.76e-10 | 75 |
regional part of forebrain | 9.27e-10 | 39 |
forebrain | 9.27e-10 | 39 |
future forebrain | 9.27e-10 | 39 |
occipital lobe | 2.89e-08 | 10 |
visual cortex | 2.89e-08 | 10 |
neocortex | 2.89e-08 | 10 |
brain grey matter | 4.20e-08 | 29 |
regional part of telencephalon | 4.20e-08 | 29 |
telencephalon | 4.20e-08 | 29 |
regional part of cerebral cortex | 2.59e-07 | 17 |