FFCP PHASE1:Mm9::chr7:31016724..31016735,-: Difference between revisions
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{{FFCP|EntrezGene=66411|HGNC=|MCL_coexpression_id=87|UniProt=Q9D1E6|association_with_transcript=312bp_to_NM_025548,uc009gds.2_5end|description=CAGE_peak_2_at_Tbcb_5end|id=chr7:31016724..31016735,-|ontology_enrichment_celltype=CL:0000221!6.97e-21!44;CL:0000133!6.97e-21!44;CL:0000055!1.40e-20!50;CL:0002319!2.96e-20!43;CL:0000393!2.00e-16!39;CL:0000211!2.00e-16!39;CL:0000540!4.63e-16!33;CL:0000047!4.63e-16!33;CL:0000031!4.63e-16!33;CL:0000404!4.63e-16!33;CL:0002321!3.35e-14!70;CL:0000220!3.35e-14!70;CL:0000117!1.47e-13!23;CL:0000337!1.47e-13!23;CL:0000144!7.23e-13!121;CL:0000012!7.23e-13!121;CL:0002371!3.12e-12!118;CL:0000548!1.58e-11!115;CL:0000004!1.58e-11!115;CL:0000255!1.58e-11!115;CL:0000034!1.02e-09!97;CL:0000723!9.11e-09!91;CL:0000048!9.11e-09!91|ontology_enrichment_celltype_v019_2=CL:0000221,1.34e-21,44;CL:0000133,1.34e-21,44;CL:0002319,5.98e-21,43;CL:0000393,5.62e-17,39;CL:0000211,5.62e-17,39;CL:0000540,1.34e-16,33;CL:0000047,1.34e-16,33;CL:0000031,1.34e-16,33;CL:0000404,1.34e-16,33;CL:0002321,3.64e-15,70;CL:0000117,5.29e-14,23;CL:0000337,5.29e-14,23;CL:0000034,5.59e-11,97;CL:0000723,5.82e-10,91;CL:0000048,5.82e-10,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.28e-20!75;UBERON:0001016!1.28e-20!75;UBERON:0001017!9.43e-20!73;UBERON:0005743!9.43e-20!73;UBERON:0004121!1.75e-13!102;UBERON:0000924!1.75e-13!102;UBERON:0006601!1.75e-13!102;UBERON:0001049!2.56e-12!52;UBERON:0005068!2.56e-12!52;UBERON:0006241!2.56e-12!52;UBERON:0007135!2.56e-12!52;UBERON:0002346!2.37e-11!71;UBERON:0003075!2.37e-11!71;UBERON:0007284!2.37e-11!71;UBERON:0002616!3.46e-10!49;UBERON:0002020!4.60e-10!34;UBERON:0000033!1.03e-09!63;UBERON:0000955!1.31e-09!50;UBERON:0006238!1.31e-09!50;UBERON:0003080!2.70e-09!40;UBERON:0003056!3.04e-09!49;UBERON:0002780!4.63e-09!39;UBERON:0001890!4.63e-09!39;UBERON:0006240!4.63e-09!39;UBERON:0002791!3.67e-07!29;UBERON:0003528!3.67e-07!29;UBERON:0001893!3.67e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.45e-21,75;UBERON:0001017,4.27e-20,73;UBERON:0004121,5.71e-16,95;UBERON:0000924,5.71e-16,95;UBERON:0006601,5.71e-16,95;UBERON:0002346,8.03e-14,64;UBERON:0003075,8.03e-14,64;UBERON:0007284,8.03e-14,64;UBERON:0000073,2.75e-13,54;UBERON:0001049,1.83e-12,52;UBERON:0005068,1.83e-12,52;UBERON:0006241,1.83e-12,52;UBERON:0007135,1.83e-12,52;UBERON:0010371,1.25e-10,73;UBERON:0002020,2.23e-10,34;UBERON:0003056,1.51e-09,49;UBERON:0003080,1.65e-09,40;UBERON:0002616,2.17e-09,46;UBERON:0002780,2.88e-09,39;UBERON:0001890,2.88e-09,39;UBERON:0006240,2.88e-09,39;UBERON:0000955,8.85e-09,47;UBERON:0006238,8.85e-09,47;UBERON:0010314,1.15e-08,92;UBERON:0003528,2.27e-07,29;UBERON:0002791,2.27e-07,29;UBERON:0001893,2.27e-07,29|phase1_expression=3.84357233051505,2.09385244583617,2.27499619694768,1.81478526784098,1.50268718983904,1.84667199103079,0.700837921786577,1.54947988129892,1.267098499365,0.234064526321993,0.68487187290202,0.8774937489487,0,0.262261207256992,0.333109761815663,0.404950534779652,0.699561878128147,0.473193248037357,0.548457734422955,2.12194825899015,2.97651515528744,1.88652807281682,2.87319768052829,2.23989391910769,0.68822784320151,1.72269589234506,1.7230479846363,2.58565479223067,1.90023419456374,2.01624103807945,1.10865255327652,0.635030673459631,0,0,1.1554064790051,0.664938581433969,0.816677425049476,1.67412652294763,2.3440060335714,3.66466620781659,2.35292595212406,0.683045484958446,1.94204141212461,1.38486499773135,2.43304634926835,2.56965453026354,6.25913075478431,2.18025156380447,4.17403747195497,1.74986909166855,2.65974201088189,4.31257693094915,2.01339127269284,2.17608642603403,2.01656279485478,2.57259436035947,2.57880095944881,1.54701627683233,9.1042407386819,7.93486468908049,8.23980824558033,5.42151251310611,1.77858959222228,4.04954872776629,1.97773272513395,4.9733608046227,8.38880309451533,5.76327457982332,2.90330914463737,4.45519596494579,4.6271491497304,13.139945282575,13.9147180799517,4.04219637409348,4.60058260887535,3.67687514644008,2.20231761998777,2.80912143787413,2.91852413186863,7.51751840062105,9.60620257825301,5.73004707612436,6.42120897703176,2.25105044012672,3.51435969886663,7.66034322231536,10.2507610175354,7.82877672466262,2.95332153999418,2.87171928405785,0.579728977403356,1.72084775396277,2.719885334831,0.539703191637817,0,0.448026887097336,1.26399978118577,1.70430322578058,2.85764605063156,3.18005617059306,4.64783285263046,2.56652954828636,0,0,1.5154372870785,2.02687892380079,3.0331466700887,1.02765491747154,0.517875767294343,0.890652834388949,1.73485326766136,0.608930956624282,0.922461989024234,1.3565037649736,0.823120949949934,1.38233250462643,1.48316980640624,0.722996784599558,0.884610551949874,0.970601099684455,0.662524555381181,0,1.86391761218122,0.585561594023094,0.83778682725382,1.27728527604296,2.27648736561249,2.39961092397363,2.03312363316904,2.39665023047716,1.37250180845588,2.01046963380583,1.21677024134594,1.27857728665165,1.87009240103604,2.27137768294861,2.03678727700633,0.870848794270651,2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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66411 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D1E6 | |||
|association_with_transcript=312bp_to_NM_025548,uc009gds.2_5end | |||
|cluster_id=chr7:31016724..31016735,- | |||
|description=CAGE_peak_2_at_Tbcb_5end | |||
|id=chr7:31016724..31016735,- | |||
|ontology_enrichment_celltype=CL:0000221!6.97e-21!44;CL:0000133!6.97e-21!44;CL:0000055!1.40e-20!50;CL:0002319!2.96e-20!43;CL:0000393!2.00e-16!39;CL:0000211!2.00e-16!39;CL:0000540!4.63e-16!33;CL:0000047!4.63e-16!33;CL:0000031!4.63e-16!33;CL:0000404!4.63e-16!33;CL:0002321!3.35e-14!70;CL:0000220!3.35e-14!70;CL:0000117!1.47e-13!23;CL:0000337!1.47e-13!23;CL:0000144!7.23e-13!121;CL:0000012!7.23e-13!121;CL:0002371!3.12e-12!118;CL:0000548!1.58e-11!115;CL:0000004!1.58e-11!115;CL:0000255!1.58e-11!115;CL:0000034!1.02e-09!97;CL:0000723!9.11e-09!91;CL:0000048!9.11e-09!91 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.34e-21,44;CL:0000133,1.34e-21,44;CL:0002319,5.98e-21,43;CL:0000393,5.62e-17,39;CL:0000211,5.62e-17,39;CL:0000540,1.34e-16,33;CL:0000047,1.34e-16,33;CL:0000031,1.34e-16,33;CL:0000404,1.34e-16,33;CL:0002321,3.64e-15,70;CL:0000117,5.29e-14,23;CL:0000337,5.29e-14,23;CL:0000034,5.59e-11,97;CL:0000723,5.82e-10,91;CL:0000048,5.82e-10,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.28e-20!75;UBERON:0001016!1.28e-20!75;UBERON:0001017!9.43e-20!73;UBERON:0005743!9.43e-20!73;UBERON:0004121!1.75e-13!102;UBERON:0000924!1.75e-13!102;UBERON:0006601!1.75e-13!102;UBERON:0001049!2.56e-12!52;UBERON:0005068!2.56e-12!52;UBERON:0006241!2.56e-12!52;UBERON:0007135!2.56e-12!52;UBERON:0002346!2.37e-11!71;UBERON:0003075!2.37e-11!71;UBERON:0007284!2.37e-11!71;UBERON:0002616!3.46e-10!49;UBERON:0002020!4.60e-10!34;UBERON:0000033!1.03e-09!63;UBERON:0000955!1.31e-09!50;UBERON:0006238!1.31e-09!50;UBERON:0003080!2.70e-09!40;UBERON:0003056!3.04e-09!49;UBERON:0002780!4.63e-09!39;UBERON:0001890!4.63e-09!39;UBERON:0006240!4.63e-09!39;UBERON:0002791!3.67e-07!29;UBERON:0003528!3.67e-07!29;UBERON:0001893!3.67e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.45e-21,75;UBERON:0001017,4.27e-20,73;UBERON:0004121,5.71e-16,95;UBERON:0000924,5.71e-16,95;UBERON:0006601,5.71e-16,95;UBERON:0002346,8.03e-14,64;UBERON:0003075,8.03e-14,64;UBERON:0007284,8.03e-14,64;UBERON:0000073,2.75e-13,54;UBERON:0001049,1.83e-12,52;UBERON:0005068,1.83e-12,52;UBERON:0006241,1.83e-12,52;UBERON:0007135,1.83e-12,52;UBERON:0010371,1.25e-10,73;UBERON:0002020,2.23e-10,34;UBERON:0003056,1.51e-09,49;UBERON:0003080,1.65e-09,40;UBERON:0002616,2.17e-09,46;UBERON:0002780,2.88e-09,39;UBERON:0001890,2.88e-09,39;UBERON:0006240,2.88e-09,39;UBERON:0000955,8.85e-09,47;UBERON:0006238,8.85e-09,47;UBERON:0010314,1.15e-08,92;UBERON:0003528,2.27e-07,29;UBERON:0002791,2.27e-07,29;UBERON:0001893,2.27e-07,29 | |||
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| |||
|short_description=p2@Tbcb | |||
}} |
Latest revision as of 14:17, 26 September 2015
Short description: | p2@Tbcb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tbcb_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 312bp_to_NM_025548, uc009gds.2_5end |
EntrezGene: | Tbcb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.34e-21 | 44 |
neurectodermal cell | 1.34e-21 | 44 |
neural cell | 5.98e-21 | 43 |
electrically responsive cell | 5.62e-17 | 39 |
electrically active cell | 5.62e-17 | 39 |
neuron | 1.34e-16 | 33 |
neuronal stem cell | 1.34e-16 | 33 |
neuroblast | 1.34e-16 | 33 |
electrically signaling cell | 1.34e-16 | 33 |
embryonic cell | 3.64e-15 | 70 |
CNS neuron (sensu Vertebrata) | 5.29e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.29e-14 | 23 |
stem cell | 5.59e-11 | 97 |
somatic stem cell | 5.82e-10 | 91 |
multi fate stem cell | 5.82e-10 | 91 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.45e-21 | 75 |
central nervous system | 4.27e-20 | 73 |
ectoderm-derived structure | 5.71e-16 | 95 |
ectoderm | 5.71e-16 | 95 |
presumptive ectoderm | 5.71e-16 | 95 |
neurectoderm | 8.03e-14 | 64 |
neural plate | 8.03e-14 | 64 |
presumptive neural plate | 8.03e-14 | 64 |
regional part of nervous system | 2.75e-13 | 54 |
neural tube | 1.83e-12 | 52 |
neural rod | 1.83e-12 | 52 |
future spinal cord | 1.83e-12 | 52 |
neural keel | 1.83e-12 | 52 |
ecto-epithelium | 1.25e-10 | 73 |
gray matter | 2.23e-10 | 34 |
pre-chordal neural plate | 1.51e-09 | 49 |
anterior neural tube | 1.65e-09 | 40 |
regional part of brain | 2.17e-09 | 46 |
regional part of forebrain | 2.88e-09 | 39 |
forebrain | 2.88e-09 | 39 |
future forebrain | 2.88e-09 | 39 |
brain | 8.85e-09 | 47 |
future brain | 8.85e-09 | 47 |
structure with developmental contribution from neural crest | 1.15e-08 | 92 |
brain grey matter | 2.27e-07 | 29 |
regional part of telencephalon | 2.27e-07 | 29 |
telencephalon | 2.27e-07 | 29 |