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FFCP PHASE1:Mm9::chr3:105254767..105254855,+: Difference between revisions

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{{FFCP
{{FFCP
|id=chr3:105254767..105254855,+
|DHSsupport=NA
|short_description=p1@Kcnd3
|DPIdataset=NA
|description=CAGE_peak_1_at_Kcnd3_5end
|association_with_transcript=-392bp_to_ENSMUST00000098761,NM_001039347,uc008qux.1,uc008quy.1_5end
|EntrezGene=56543
|EntrezGene=56543
|HGNC=
|HGNC=
|MCL_coexpression_id=2356
|TSSclassifier=NA
|UniProt=Q9Z0V1,Q3UH54
|UniProt=Q9Z0V1,Q3UH54
|association_with_transcript=-392bp_to_ENSMUST00000098761,NM_001039347,uc008qux.1,uc008quy.1_5end
|cluster_id=chr3:105254767..105254855,+
|description=CAGE_peak_1_at_Kcnd3_5end
|id=chr3:105254767..105254855,+
|ontology_enrichment_celltype=CL:0000117!3.97e-12!23;CL:0000337!3.97e-12!23;CL:0000540!1.56e-09!33;CL:0000047!1.56e-09!33;CL:0000031!1.56e-09!33;CL:0000404!1.56e-09!33;CL:0002319!3.20e-09!43;CL:0000221!5.36e-09!44;CL:0000133!5.36e-09!44
|ontology_enrichment_celltype_v019_2=CL:0000117,2.33e-13,23;CL:0000337,2.33e-13,23;CL:0000540,5.48e-09,33;CL:0000047,5.48e-09,33;CL:0000031,5.48e-09,33;CL:0000404,5.48e-09,33;CL:0002319,6.75e-08,43;CL:0000221,1.76e-07,44;CL:0000133,1.76e-07,44
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002346!2.40e-23!71;UBERON:0003075!2.40e-23!71;UBERON:0007284!2.40e-23!71;UBERON:0001017!2.41e-22!73;UBERON:0005743!2.41e-22!73;UBERON:0000073!9.31e-22!75;UBERON:0001016!9.31e-22!75;UBERON:0000033!3.77e-20!63;UBERON:0001049!2.08e-19!52;UBERON:0005068!2.08e-19!52;UBERON:0006241!2.08e-19!52;UBERON:0007135!2.08e-19!52;UBERON:0004121!1.01e-18!102;UBERON:0000924!1.01e-18!102;UBERON:0006601!1.01e-18!102;UBERON:0000955!1.07e-18!50;UBERON:0006238!1.07e-18!50;UBERON:0002616!5.96e-18!49;UBERON:0003056!7.73e-18!49;UBERON:0002020!6.08e-16!34;UBERON:0003080!2.48e-14!40;UBERON:0002780!1.19e-13!39;UBERON:0001890!1.19e-13!39;UBERON:0006240!1.19e-13!39;UBERON:0002791!5.70e-13!29;UBERON:0003528!5.70e-13!29;UBERON:0001893!5.70e-13!29;UBERON:0000956!2.56e-08!21;UBERON:0001869!2.56e-08!21;UBERON:0000203!2.56e-08!21;UBERON:0007811!5.56e-08!86;UBERON:0002619!7.09e-08!17
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.48e-25,64;UBERON:0003075,1.48e-25,64;UBERON:0007284,1.48e-25,64;UBERON:0000073,1.89e-22,54;UBERON:0001017,1.45e-21,73;UBERON:0001049,1.49e-20,52;UBERON:0005068,1.49e-20,52;UBERON:0006241,1.49e-20,52;UBERON:0007135,1.49e-20,52;UBERON:0001016,2.43e-20,75;UBERON:0010371,1.94e-19,73;UBERON:0004121,2.17e-18,95;UBERON:0000924,2.17e-18,95;UBERON:0006601,2.17e-18,95;UBERON:0003056,5.49e-18,49;UBERON:0002020,6.27e-18,34;UBERON:0000955,2.42e-17,47;UBERON:0006238,2.42e-17,47;UBERON:0002616,1.62e-16,46;UBERON:0003528,2.04e-14,29;UBERON:0002791,2.04e-14,29;UBERON:0001893,2.04e-14,29;UBERON:0003080,2.11e-14,40;UBERON:0002780,1.24e-13,39;UBERON:0001890,1.24e-13,39;UBERON:0006240,1.24e-13,39;UBERON:0010314,2.24e-12,92;UBERON:0002619,4.29e-09,17;UBERON:0000956,5.96e-09,21;UBERON:0001869,5.96e-09,21;UBERON:0000203,5.96e-09,21;UBERON:0002420,4.57e-07,8;UBERON:0007245,4.57e-07,8;UBERON:0010009,4.57e-07,8;UBERON:0010011,4.57e-07,8;UBERON:0000454,4.57e-07,8;UBERON:0003076,5.46e-07,12;UBERON:0003057,5.46e-07,12;UBERON:0002021,7.30e-07,10;UBERON:0000411,7.30e-07,10;UBERON:0001950,7.30e-07,10
|phase1_expression=0.80074423552397,0,0,0,0,1.00727563147134,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.57852828398938,2.63623419281366,3.88859798148567,0.699932108126813,1.43752564364972,0.167782606057736,0,0,0,0.286533439938757,0,16.7922662513466,19.0436752537932,21.5502677192101,0.338844532069132,0,0,0,0,0.299600110518405,2.68952813725088,1.45165457231869,0.945041568321835,1.26194976810829,7.9982275633065,7.73039893330647,2.69479758272899,2.30029130443767,2.75765635983006,14.3150645299205,13.1517958227743,15.9750794586493,14.1118327871307,14.3635600455783,13.022834263919,8.65467296904281,10.6924895906019,11.4598685832608,13.5529149317887,9.8236459751381,11.7431650869939,0.151452386666368,0.453429360640713,0.289864488701678,0,0,0.539703191637817,0,0,0.842666520790511,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0.693941307064543,1.21786191324856,1.15307748628029,0.904335843315735,2.11659672844269,0.125666591329675,0,0.578397427679647,0,0,0,0,0,15.2246014446005,7.95897485891129,0,0,0,0,16.7765516133401,9.15001205637253,6.65968066198181,14.0797699355744,10.4843337505436,11.6361304953354,11.0324058886075,6.51771928642024,2.36373244159177,4.80173241023982,4.62972082950243,0.520481771850815,2.98872735763515,6.12211241338187,5.72678307775717,5.78310242786287,7.17436833595159,8.33945348581587,9.57202471734358,0,0.378212160335639,1.05570674498369,0.219195732427575,0.278047249225598,0,0,3.98068533636986,0,0,0,0.414251545071004,0,0,0,0,0,0,0,0.116765342367169,0.329119699826961,0,0.243206428637567,0.438599962275997,0.878200461164203,0.939444931322602,13.8791366052324,3.60166143327496,0,0,6.39864751605702,18.1144604051142,8.37638498593607,7.26060688644033,4.66993892074228,1.52180500890047,0,0.823494773620054,1.25667604400135,0.596869416123452,0.779856348476481,0,0.648414149624083,0.796565093017469,0.189667900953082,0.685491075658373,2.25415471346161,1.83286195060783,0.775809948670503,1.1221731182451,4.67950374719504,1.32849133181642,1.09899109488962,0.370191491765402,0,0.166845105716094,0.196558995113203,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.37898282354097,1.30371981153621,0.339490171550376,0,0.335012514883631,0,0,0,0,0,0,0,0,0,0,0,0,5.45872005958493,5.15731421005694,0,0,2.2085575359138,2.73307121007647,5.17016154558717,0.238968797952552,0,0.283076530788832,0,0.584511715822624,0.395287777946524,23.4564560987919,3.83238230062325,0.35613120733451,0.162886959353576,10.5580878702423,1.32745138339963,0.485561272309963,0.302323556964751,0.565815239267694,0.295301892880773,1.22974059177571,0,0,1.06949213515416,0.632073515871632,2.10837217149998,0,3.74483566329167,0.540183282093931,1.16422815404479,0.643011105094777,1.06404140185364,1.24858172321449,1.15184314421485,0.913394847343798,1.17335854031855,0.21183207086382,1.54369878638473,0,0,0.0603129249281559,0,0,0.291480836629851,5.7481843623258,0.170870880797853,0.82554747185289,0.185194527369712,0.565105371014073,0,0.457556346413045,0.339956859987711,0,0.138199973804424,0,4.4287039101359,11.5892096262304,9.18045396985311,7.10900206449194,5.45906409365444,2.96701562046606,3.14083131756277,1.57053565190418,1.42576470620972,0,1.12738587736838,2.54178128274764,2.31641886639937,2.13896307178452,4.1331143512874,5.06868376472335,2.93393096614385,7.16124116641726,7.34015410979976,2.89900944991207,0.864090018773596,0,0,0,0,0.179026695667481,0.198681354781265,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,3.28422309854724,0.93841237725591,2.01466786693992,0.428736758158132,0,6.7770221114048,5.06357760157895,3.43737308063638,7.56154002312225,6.85082519770642,4.5323633843382,8.10027000278167,9.00642406448441,11.3285602246051,9.31968561153276,0.31136204275253,1.59609949360412,2.56100408631201,2.18796045361465,1.88651846365184,3.8607136774503,1.77797382241292,3.7086310303001,3.20919209591815,3.53776096469316,3.8021894983536,2.45214243801899,3.183811253976,2.43295579138503,1.95280594449085,2.85776214769844,2.0859178670074,1.73618298417335,0.824171801606613,2.06078488188156,2.40008476669791,1.4198064492747,1.1921809497366,2.47088908274958,2.25862512996793,2.70766745253365,2.19513567447327,3.15683653725411,2.71608227691724,2.24456908663095,2.72860541685601,2.56111654176465,2.04615521584845,2.32405261778949,2.12197272079256,5.49583271463481,1.87145286756327,1.50409737833809,0.956441660344217,0.441182838239031,0.231867835620421
|phase1_expression=0.80074423552397,0,0,0,0,1.00727563147134,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8064285749853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.57852828398938,2.63623419281366,3.88859798148567,0.699932108126813,1.43752564364972,0.167782606057736,0,0,0,0.286533439938757,0,16.7922662513466,19.0436752537932,21.5502677192101,0.338844532069132,0,0,0,0,0.299600110518405,2.68952813725088,1.45165457231869,0.945041568321835,1.26194976810829,7.9982275633065,7.73039893330647,2.69479758272899,2.30029130443767,2.75765635983006,14.3150645299205,13.1517958227743,15.9750794586493,14.1118327871307,14.3635600455783,13.022834263919,8.65467296904281,10.6924895906019,11.4598685832608,13.5529149317887,9.8236459751381,11.7431650869939,0.151452386666368,0.453429360640713,0.289864488701678,0,0,0.539703191637817,0,0,0.842666520790511,0,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0.693941307064543,1.21786191324856,1.15307748628029,0.904335843315735,2.11659672844269,0.125666591329675,0,0.578397427679647,0,0,0,0,0,15.2246014446005,7.95897485891129,0,0,0,0,16.7765516133401,9.15001205637253,6.65968066198181,14.0797699355744,10.4843337505436,11.6361304953354,11.0324058886075,6.51771928642024,2.36373244159177,4.80173241023982,4.62972082950243,0.520481771850815,2.98872735763515,6.12211241338187,5.72678307775717,5.78310242786287,7.17436833595159,8.33945348581587,9.57202471734358,0,0.378212160335639,1.05570674498369,0.219195732427575,0.278047249225598,0,0,3.98068533636986,0,0,0,0.414251545071004,0,0,0,0,0,0,0,0.116765342367169,0.329119699826961,0,0.243206428637567,0.438599962275997,0.878200461164203,0.939444931322602,13.8791366052324,3.60166143327496,0,0,6.39864751605702,18.1144604051142,8.37638498593607,7.26060688644033,4.66993892074228,1.52180500890047,0,0.823494773620054,1.25667604400135,0.596869416123452,0.779856348476481,0,0.648414149624083,0.796565093017469,0.189667900953082,0.685491075658373,2.25415471346161,1.83286195060783,0.775809948670503,1.1221731182451,4.67950374719504,1.32849133181642,1.09899109488962,0.370191491765402,0,0.166845105716094,0.196558995113203,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.37898282354097,1.30371981153621,0.339490171550376,0,0.335012514883631,0,0,0,0,0,0,0,0,0,0,0,0,5.45872005958493,5.15731421005694,0,0,2.2085575359138,2.73307121007647,5.17016154558717,0.238968797952552,0,0.283076530788832,0,0.584511715822624,0.395287777946524,23.4564560987919,3.83238230062325,0.35613120733451,0.162886959353576,10.5580878702423,1.32745138339963,0.485561272309963,0.302323556964751,0.565815239267694,0.295301892880773,1.22974059177571,0,0,1.06949213515416,0.632073515871632,2.10837217149998,0,3.74483566329167,0.540183282093931,1.16422815404479,0.643011105094777,1.06404140185364,1.24858172321449,1.15184314421485,0.913394847343798,1.17335854031855,0.21183207086382,1.54369878638473,0,0,0.0603129249281559,0,0,0.291480836629851,5.7481843623258,0.170870880797853,0.82554747185289,0.185194527369712,0.565105371014073,0,0.457556346413045,0.339956859987711,0,0.138199973804424,0,4.4287039101359,11.5892096262304,9.18045396985311,7.10900206449194,5.45906409365444,2.96701562046606,3.14083131756277,1.57053565190418,1.42576470620972,0,1.12738587736838,2.54178128274764,2.31641886639937,2.13896307178452,4.1331143512874,5.06868376472335,2.93393096614385,7.16124116641726,7.34015410979976,2.89900944991207,0.864090018773596,0,0,0,0,0.179026695667481,0.198681354781265,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,3.28422309854724,0.93841237725591,2.01466786693992,0.428736758158132,0,6.7770221114048,5.06357760157895,3.43737308063638,7.56154002312225,6.85082519770642,4.5323633843382,8.10027000278167,9.00642406448441,11.3285602246051,9.31968561153276,0.31136204275253,1.59609949360412,2.56100408631201,2.18796045361465,1.88651846365184,3.8607136774503,1.77797382241292,3.7086310303001,3.20919209591815,3.53776096469316,3.8021894983536,2.45214243801899,3.183811253976,2.43295579138503,1.95280594449085,2.85776214769844,2.0859178670074,1.73618298417335,0.824171801606613,2.06078488188156,2.40008476669791,1.4198064492747,1.1921809497366,2.47088908274958,2.25862512996793,2.70766745253365,2.19513567447327,3.15683653725411,2.71608227691724,2.24456908663095,2.72860541685601,2.56111654176465,2.04615521584845,2.32405261778949,2.12197272079256,5.49583271463481,1.87145286756327,1.50409737833809,0.956441660344217,0.441182838239031,0.231867835620421
|short_description=p1@Kcnd3
}}
}}

Latest revision as of 06:01, 27 September 2015

Short description:p1@Kcnd3
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Kcnd3_5end
Coexpression cluster:MCL_coexpression_mm9:2356
Association with transcript: -392bp_to_ENSMUST00000098761, NM_001039347, uc008qux.1, uc008quy.1_5end
EntrezGene:Kcnd3
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Kcnd3

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.80
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I71.01
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.47
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A32.81
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C24.58
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B82.64
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C33.89
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.70
Mouse Astrocytes, donor3.CNhs12107.11633-122C41.44
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.17
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C316.79
Mouse Granule cells, donor2.CNhs12357.11731-123E319.04
Mouse Granule cells, donor3.CNhs12108.11636-122C721.55
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.30
Mouse Microglia, donor2.CNhs12634.11736-123E82.69
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D51.45
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.95
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D91.26
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F18.00
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D57.73
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D22.69
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F22.30
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D62.76
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D314.32
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F313.15
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D715.98
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D414.11
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F414.36
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D813.02
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E48.65
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E510.69
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I611.46
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D613.55
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F69.82
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E111.74
Mouse Schwann, donor1.CNhs12507.11728-123D90.15
Mouse Schwann, donor2.CNhs12573.11746-123F90.45
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.29
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.84
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.28
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.11
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.45
adrenal gland, embryo E14.CNhs11038.406-44C50.69
adrenal gland, embryo E16.CNhs11004.1254-43D61.22
adrenal gland, embryo E17.CNhs11043.1263-45I11.15
adrenal gland, embryo E18.CNhs11026.1262-18F50.90
adrenal gland, neonate N00.CNhs11191.1311-23C12.12
adrenal gland, neonate N25.CNhs11223.1377-27I30.13
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.58
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B215.22
cerebellum, neonate N30.CNhs11135.1395-42I27.96
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A416.78
corpus striatum, adult.CNhs10487.19-21D89.15
corpus striatum, neonate N00.CNhs11226.630-43F16.66
cortex, adult.CNhs10473.12-14D514.08
cortex, neonate N30.CNhs11107.1392-42F210.48
diencephalon, adult.CNhs10482.20-12F211.64
diencephalon, neonate N30.CNhs11201.1388-42B211.03
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B16.52
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A22.36
epididymis, adult.CNhs10490.58-23B24.80
eyeball, adult.CNhs10484.31-12G44.63
eyeball, embryo E12.CNhs11016.345-16C60.52
eyeball, embryo E14.CNhs10521.399-16E22.99
eyeball, embryo E15.CNhs10593.426-16C96.12
eyeball, embryo E17.CNhs11023.1261-18D45.73
eyeball, neonate N00.CNhs11207.633-15C65.78
eyeball, neonate N01.CNhs11140.1532-43E77.17
eyeball, neonate N02.CNhs11205.1551-44G88.34
eyeball, neonate N16.CNhs11188.777-19A29.57
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.38
forelimb, embryo E13.CNhs10589.384-1E21.06
forelimb, embryo E14.CNhs10577.413-26A80.22
forelimb, embryo E15.CNhs11007.437-20E70.28
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I63.98
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.41
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.00
heart, embryo E15.CNhs11017.431-16C80.00
heart, embryo E16.CNhs11021.457-17C60.00
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.12
heart, neonate N03.CNhs11221.1349-25I20.33
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.24
heart, neonate N20.CNhs11127.821-26I60.44
heart, neonate N25.CNhs11196.1351-25D30.88
heart, neonate N30.CNhs11202.1390-42D20.94
hippocampus, adult.CNhs10478.13-16E813.88
hippocampus, neonate N00.CNhs11228.627-43G13.60
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I56.40
intestine, embryo E13.CNhs11010.381-16D518.11
intestine, embryo E15.CNhs10602.976-16D88.38
intestine, embryo E16.CNhs10585.463-22H47.26
intestine, embryo E17.CNhs10582.482-18D34.67
intestine, embryo E18.CNhs10526.1289-20F71.52
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.82
intestine, neonate N06.CNhs11102.688-20B81.26
intestine, neonate N07.CNhs11095.720-20F20.60
intestine, neonate N10.CNhs11098.755-23A50.78
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.65
intestine, neonate N30.CNhs11131.1384-42G10.80
kidney, embryo E14.CNhs10606.411-4I90.19
kidney, embryo E15.CNhs10997.434-16F80.69
kidney, embryo E16.CNhs10584.464-22A52.25
kidney, embryo E17.CNhs11028.483-18I21.83
kidney, embryo E18.CNhs11001.1288-20C70.78
kidney, neonate N00.CNhs11214.646-21G71.12
kidney, neonate N10.CNhs11206.758-6D54.68
kidney, neonate N20.CNhs11113.832-19I11.33
kidney, neonate N25.CNhs11122.1353-25F31.10
kidney, neonate N30.CNhs11203.1385-42H10.37
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.17
liver, embryo E13.CNhs10524.378-3H60.20
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.20
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.00
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.18
lung, embryo E12.CNhs10522.354-16G20.38
lung, embryo E14.CNhs10604.404-26F81.30
lung, embryo E15.CNhs11020.432-17C50.34
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.34
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.00
lung, neonate N07.CNhs11111.715-19A30.00
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C25.46
medulla oblongata, neonate N30.CNhs11200.1396-42A35.16
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E12.21
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E22.73
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E35.17
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.24
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.28
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.58
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.40
olfactory brain, adult.CNhs10489.18-22I923.46
ovary, adult.CNhs10507.91-2I73.83
ovary, embryo E18.CNhs11040.505-44H70.36
ovary, neonate N00.CNhs11217.1299-22I40.16
oviduct, adult pregnant day01.CNhs10500.988-6G610.56
pancreas, adult.CNhs10486.34-16E41.33
pancreas, embryo E14.CNhs11012.405-44F40.49
pancreas, embryo E15.CNhs11042.1556-45F20.30
pancreas, embryo E16.CNhs11003.460-26E50.57
pancreas, embryo E17.CNhs10599.1558-45G30.30
pancreas, embryo E18.CNhs10580.1535-43I71.23
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D81.07
pancreas, neonate N16.CNhs11136.787-43B60.63
pancreas, neonate N25.CNhs11094.1555-45E22.11
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G83.74
pituitary gland, embryo E12.CNhs11018.346-16E60.54
pituitary gland, embryo E13.CNhs11009.370-44C71.16
pituitary gland, embryo E14.CNhs11037.398-44A50.64
pituitary gland, embryo E15.CNhs10592.427-16B91.06
pituitary gland, embryo E16.CNhs11036.449-43F61.25
pituitary gland, embryo E17.CNhs11039.1265-44F51.15
pituitary gland, neonate N00.CNhs11190.1308-22E90.91
placenta, adult pregnant day10.CNhs10472.539-13I71.17
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F81.54
skin, adult.CNhs10492.30-1C30.00
skin, neonate N00.CNhs11124.650-25G40.00
skin, neonate N03.CNhs11215.662-22H30.06
skin, neonate N06.CNhs11097.693-20I50.00
skin, neonate N10.CNhs11108.762-6C40.00
small intestine, neonate N16.CNhs11114.790-21I10.29
spinal cord, adult.CNhs10505.24-13C95.75
spleen, adult.CNhs10465.25-2G20.17
spleen, embryo E16.CNhs11035.461-43C10.83
spleen, embryo E18.CNhs11011.1271-21F20.19
spleen, neonate N10.CNhs11116.752-24D10.57
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.46
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.34
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.14
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E34.43
stomach, embryo E15.CNhs10603.1252-16G811.59
stomach, embryo E16.CNhs11022.459-17D49.18
stomach, embryo E17.CNhs11006.1035-18D57.11
stomach, embryo E18.CNhs10999.1286-20C65.46
stomach, neonate N03.CNhs11193.1340-24B82.97
stomach, neonate N07.CNhs11210.718-18A93.14
stomach, neonate N25.CNhs11104.1355-25E41.57
stomach, neonate N30.CNhs11134.1386-42I11.43
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G51.13
testis, embryo E13.CNhs11031.389-23F52.54
testis, embryo E15.CNhs11034.443-27C52.32
testis, embryo E16.CNhs11033.470-26G52.14
testis, embryo E17.CNhs11029.486-18I54.13
testis, embryo E18.CNhs11027.503-18G55.07
testis, neonate N00.CNhs11189.1300-22B72.93
testis, neonate N07.CNhs11222.726-26I47.16
testis, neonate N10.CNhs11204.763-44D97.34
testis, neonate N20.CNhs11110.839-18H32.90
testis, neonate N30.CNhs11130.1391-42E20.86
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.00
thymus, embryo E15.CNhs11005.430-45I20.00
thymus, embryo E16.CNhs11002.456-26C50.00
thymus, embryo E17.CNhs10581.478-18C10.18
thymus, embryo E18.CNhs10595.1273-19G40.20
thymus, neonate N02.CNhs11181.1541-43F80.12
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E43.28
uterus, adult pregnant day19.CNhs10497.590-15F50.94
uterus, adult.CNhs10509.92-27E52.01
vagina, adult.CNhs10502.89-27D50.43
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A16.78
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A25.06
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A33.44
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D77.56
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A46.85
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A54.53
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A68.10
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A79.01
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A811.33
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A99.32
whole body, embryo E11.CNhs11014.324-5I80.31
whole body, embryo E12.CNhs10587.857-27C91.60
whole body, embryo E13.CNhs10512.372-23H22.56
whole body, embryo E14.5.CNhs10578.420-27D22.19
whole body, embryo E14.CNhs10519.395-14B11.89
whole body, embryo E16.CNhs10514.453-14F23.86
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G51.78
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G53.71
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G53.21
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G53.54
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G53.80
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G52.45
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G53.18
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G52.43
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G51.95
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G52.86
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G52.09
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G51.74
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G52.06
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G52.40
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G51.42
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G51.19
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G52.47
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G52.26
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G52.71
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G52.20
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G53.16
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G52.72
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G52.24
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G52.73
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G52.56
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G52.05
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G52.32
whole body, embryo E17.5.CNhs10513.490-9F92.12
whole body, embryo E17.CNhs10517.475-3I55.50
whole body, embryo E18.CNhs10516.493-3B31.87
whole body, neonate N00.CNhs10525.657-19C21.50
whole body, neonate N01.CNhs10576.659-23C60.96
whole body, neonate N06.CNhs10515.692-21D10.44
whole body, neonate N10.CNhs10518.761-6B40.23





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)2.33e-1323
neuroblast (sensu Vertebrata)2.33e-1323
neuron5.48e-0933
neuronal stem cell5.48e-0933
neuroblast5.48e-0933
electrically signaling cell5.48e-0933
neural cell6.75e-0843
ectodermal cell1.76e-0744
neurectodermal cell1.76e-0744

Uber anatomy
Ontology termp-valuen
neurectoderm1.48e-2564
neural plate1.48e-2564
presumptive neural plate1.48e-2564
regional part of nervous system1.89e-2254
central nervous system1.45e-2173
neural tube1.49e-2052
neural rod1.49e-2052
future spinal cord1.49e-2052
neural keel1.49e-2052
nervous system2.43e-2075
ecto-epithelium1.94e-1973
ectoderm-derived structure2.17e-1895
ectoderm2.17e-1895
presumptive ectoderm2.17e-1895
pre-chordal neural plate5.49e-1849
gray matter6.27e-1834
brain2.42e-1747
future brain2.42e-1747
regional part of brain1.62e-1646
brain grey matter2.04e-1429
regional part of telencephalon2.04e-1429
telencephalon2.04e-1429
anterior neural tube2.11e-1440
regional part of forebrain1.24e-1339
forebrain1.24e-1339
future forebrain1.24e-1339
structure with developmental contribution from neural crest2.24e-1292
regional part of cerebral cortex4.29e-0917
cerebral cortex5.96e-0921
cerebral hemisphere5.96e-0921
pallium5.96e-0921
basal ganglion4.57e-078
nuclear complex of neuraxis4.57e-078
aggregate regional part of brain4.57e-078
collection of basal ganglia4.57e-078
cerebral subcortex4.57e-078
posterior neural tube5.46e-0712
chordal neural plate5.46e-0712
occipital lobe7.30e-0710
visual cortex7.30e-0710
neocortex7.30e-0710
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