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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00005168
|ancestors_in_anatomy_facet=
|HumanCAGEScanFiles=NCig10068;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.NCig10068.10424-106D1.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008013;DRR008885;DRZ000310;DRZ001695;DRZ011660;DRZ013045
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002106,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=DOID:0050686,DOID:0060058,DOID:0060083,DOID:14566,DOID:162,DOID:2531,DOID:4
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100104
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.58!383.47!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.34!219.57!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.17!146.91!PLEK;;chr1:25291475..25291511,-!p2@RUNX3!2.14!137.42!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!2.04!109.04!SPI1;;chr17:38020392..38020477,-!p1@IKZF3!1.92!82.55!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.90!576.36!MEF2C;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.90!78.25!MEF2B;;chr1:170632051..170632081,+!p16@PRRX1!1.85!69.86!PRRX1;;chr14:75988771..75988826,+!p1@BATF!1.73!69.16!BATF;;chr1:170632115..170632136,+!p9@PRRX1!1.70!49.07!PRRX1;;chr19:36204309..36204335,+!p1@ZBTB32!1.69!47.87!ZBTB32;;chr7:28452130..28452154,+!p10@CREB5!1.67!46.17!CREB5;;chr14:75988831..75988847,+!p2@BATF!1.67!45.27!BATF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!45.27!ZBED1;;chr1:170632028..170632043,+!p20@PRRX1!1.61!39.28!PRRX1;;chr16:85932760..85932775,+!p1@IRF8!1.57!36.38!IRF8;;chr1:3569072..3569093,+!p1@TP73!1.56!35.28!TP73;;chr5:88179017..88179046,-!p2@MEF2C!1.52!124.63!MEF2C;;chr2:231090433..231090469,+!p1@SP140!1.51!31.18!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.48!29.18!PLEK;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.48!PRRX1;;chr19:50922187..50922204,+!p1@SPIB!1.46!27.58!SPIB;;chr1:25256756..25256774,-!p1@RUNX3!1.44!49.57!RUNX3;;chr3:101546827..101546847,+!p2@NFKBIZ!1.44!36.88!NFKBIZ;;chr12:103351444..103351461,+!p1@ASCL1!1.42!25.29!ASCL1;;chr1:25291620..25291635,-!p4@RUNX3!1.37!22.39!RUNX3;;chr1:170632137..170632172,+!p10@PRRX1!1.37!22.29!PRRX1;;chr2:231090471..231090504,+!p2@SP140!1.34!20.79!SP140;;chr2:68615031..68615055,+!p3@PLEK!1.31!19.19!PLEK;;chr20:50159198..50159299,-!p1@NFATC2!1.28!25.98!NFATC2;;chr4:185395590..185395627,-!p3@IRF2!1.27!21.79!IRF2;;chr12:103352277..103352324,+!p2@ASCL1!1.27!17.49!ASCL1;;chr11:47236584..47236679,+!p1@DDB2!1.26!182.39!DDB2;;chr10:35415951..35415975,+!p8@CREM!1.26!23.69!CREM;;chr19:44617476..44617478,+!p3@ZNF225!1.26!17.19!ZNF225;;chr19:50432453..50432468,+!p1@ATF5!1.24!890.38!ATF5;;chr8:135614084..135614119,-!p4@ZFAT!1.24!16.39!ZFAT;;chr7:28610099..28610113,+!p5@CREB5!1.24!16.29!CREB5;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.58!EBF1;;chr5:142780237..142780261,-!p7@NR3C1!1.23!15.79!NR3C1;;chr8:72756667..72756736,-!p2@MSC!1.21!23.59!MSC;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.49!ZNF385A;;chr5:88179518..88179569,-!p5@MEF2C!1.19!19.09!MEF2C;;chr15:60884706..60884743,-!p1@RORA!1.18!71.76!RORA;;chr5:142780189..142780223,-!p6@NR3C1!1.16!13.29!NR3C1;;chr19:42636586..42636607,-!p1@POU2F2!1.14!35.68!POU2F2;;chr16:85936412..85936431,+!p2@IRF8!1.14!12.79!IRF8;;chr19:45579725..45579743,-!p1@ZNF296!1.13!55.87!ZNF296;;chr1:151319654..151319698,-!p2@RFX5!1.13!27.58!RFX5;;chr8:135614120..135614149,-!p5@ZFAT!1.12!12.19!ZFAT;;chr10:104155480..104155534,+!p2@NFKB2!1.11!76.65!NFKB2;;chr8:72756637..72756664,-!p3@MSC!1.10!13.29!MSC;;chr7:50344251..50344288,+!p3@IKZF1!1.10!11.59!IKZF1;;chr9:126774018..126774055,+!p1@LHX2!1.09!11.19!LHX2;;chr2:61108695..61108753,+!p1@REL!1.08!77.05!REL;;chr4:26322267..26322334,+!p3@RBPJ!1.07!26.38!RBPJ;;chr12:54447599..54447630,+!p3@HOXC4!1.07!13.19!HOXC4;;chr16:85936539..85936562,+!p3@IRF8!1.07!10.79!IRF8;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.59!PRRX1;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.39!TCF4;;chr19:19729477..19729542,-!p1@PBX4!1.04!21.79!PBX4;;chr4:185395633..185395651,-!p2@IRF2!1.03!15.79!IRF2;;chr14:75988851..75988862,+!p3@BATF!1.03!9.69!BATF;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.19!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!8.99!IKZF2;;chr13:41593425..41593480,-!p1@ELF1!0.99!56.67!ELF1;;chr12:11802753..11802834,+!p2@ETV6!0.99!44.37!ETV6;;chr2:214015111..214015179,-!p1@IKZF2!0.99!15.99!IKZF2;;chr17:38020557..38020572,-!p4@IKZF3!0.99!8.69!IKZF3;;chr9:117150254..117150271,-!p1@AKNA!0.98!23.99!AKNA;;chr11:615570..615721,-!p2@IRF7!0.98!17.19!IRF7;;chr7:128577972..128578047,+!p1@IRF5!0.98!13.59!IRF5;;chr11:19262421..19262455,-!p3@E2F8!0.98!8.59!E2F8;;chr6:106534192..106534224,+!p1@PRDM1!0.97!24.39!PRDM1;;chr8:72756063..72756125,-!p1@MSC!0.97!17.09!MSC;;chr7:50343634..50343717,+!p2@IKZF1!0.97!8.40!IKZF1;;chr12:54785054..54785072,-!p4@ZNF385A!0.96!9.29!ZNF385A;;chr1:14057463..14057496,+!p4@PRDM2!0.96!8.20!PRDM2;;chr1:25291648..25291665,-!p7@RUNX3!0.95!8.00!RUNX3;;chr16:31885093..31885165,+!p1@ZNF267!0.94!121.23!ZNF267;;chr5:133450365..133450444,+!p1@TCF7!0.94!36.28!TCF7;;chr8:135577829..135577861,-!p6@ZFAT!0.94!7.80!ZFAT;;chr10:104154246..104154347,+!p3@NFKB2!0.92!46.47!NFKB2;;chr1:170632439..170632465,+!p11@PRRX1!0.92!7.40!PRRX1;;chr2:231090344..231090361,-!p3@SP110!0.92!7.40!SP110;;chr9:2015335..2015370,+!p1@SMARCA2!0.91!89.85!SMARCA2;;chr9:2158443..2158481,+!p2@SMARCA2!0.91!20.99!SMARCA2;;chr6:106534230..106534254,+!p2@PRDM1!0.90!17.99!PRDM1;;chr10:64576105..64576133,-!p1@EGR2!0.90!14.69!EGR2;;chr19:42627037..42627084,-!p3@POU2F2!0.90!7.00!POU2F2;;chr4:109089901..109089930,-!p3@LEF1!0.90!6.90!LEF1;;chr2:68615063..68615089,+!p4@PLEK!0.89!6.80!PLEK;;chr1:167298300..167298319,+!p2@POU2F1!0.89!6.70!POU2F1;;chr5:88120151..88120177,-!p6@MEF2C!0.88!6.60!MEF2C;;chr9:2015306..2015323,+!p3@SMARCA2!0.87!17.49!SMARCA2;;chr4:26321361..26321377,+!p6@RBPJ!0.87!8.20!RBPJ;;chr11:47400062..47400077,-!p2@SPI1!0.87!6.40!SPI1;;chr1:170633348..170633399,+!p2@PRRX1!0.85!8.40!PRRX1;;chr4:106068026..106068084,+!p1@TET2!0.84!57.37!TET2;;chr5:142782823..142782854,-!p3@NR3C1!0.84!8.79!NR3C1;;chr2:214015343..214015366,-!p3@IKZF2!0.84!5.90!IKZF2;;chr2:148778973..148779035,+!p3@MBD5!0.83!15.89!MBD5;;chr1:158979686..158979745,+!p1@IFI16!0.82!200.08!IFI16;;chr1:170632477..170632506,+!p6@PRRX1!0.82!5.60!PRRX1;;chr5:158526756..158526797,-!p3@EBF1!0.82!5.60!EBF1;;chr7:64838786..64838809,+!p2@ZNF92!0.81!33.18!ZNF92;;chr5:321810..321877,+!p1@AHRR!0.81!18.59!AHRR;;chr8:135613895..135613921,-!p8@ZFAT!0.81!5.40!ZFAT;;chr19:50435736..50435781,+!p3@ATF5!0.79!7.40!ATF5;;chr7:50348268..50348366,+!p4@IKZF1!0.79!5.20!IKZF1;;chr6:41673552..41673571,-!p10@TFEB!0.79!5.10!TFEB;;chr7:115799942..115799955,-!p5@TFEC!0.78!5.00!TFEC;;chr2:214013461..214013517,-!p6@IKZF2!0.78!5.00!IKZF2;;chr3:141747459..141747475,-!p1@TFDP2!0.77!44.57!TFDP2;;chr18:51751066..51751077,-!p6@MBD2!0.77!7.60!MBD2;;chr6:41700616..41700664,-!p8@TFEB!0.77!4.90!TFEB;;chr20:46130619..46130664,+!p1@NCOA3!0.76!141.82!NCOA3;;chr2:61108650..61108687,+!p2@REL!0.76!25.68!REL;;chr17:41739283..41739297,-!p1@MEOX1!0.76!4.80!MEOX1;;chr6:106546731..106546755,+!p5@PRDM1!0.76!4.80!PRDM1;;chr3:141747950..141748004,-!p7@TFDP2!0.76!4.70!TFDP2;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.70!HOXC4;;chr1:3569135..3569150,+!p3@TP73!0.76!4.70!TP73;;chr20:56195474..56195506,-!p1@ZBP1!0.76!4.70!ZBP1;;chr11:615942..615957,-!p1@IRF7!0.75!48.37!IRF7;;chr2:68615096..68615115,+!p5@PLEK!0.75!4.60!PLEK;;chr5:142780280..142780294,-!p16@NR3C1!0.75!4.60!NR3C1;;chr10:35415978..35416050,+!p5@CREM!0.74!20.79!CREM;;chr3:178789993..178790049,-!p5@ZMAT3!0.74!6.80!ZMAT3;;chr9:37034469..37034474,-!p1@PAX5!0.74!4.50!PAX5;;chr12:77459306..77459365,-!p1@E2F7!0.73!61.26!E2F7;;chr7:28448965..28448994,+!p2@CREB5!0.73!16.89!CREB5;;chr5:88185134..88185147,-!p15@MEF2C!0.73!4.40!MEF2C;;chr11:19262461..19262476,-!p5@E2F8!0.73!4.40!E2F8;;chr10:35415882..35415941,+!p4@CREM!0.72!21.09!CREM;;chr19:1652555..1652568,-!p2@TCF3!0.72!19.39!TCF3;;chr15:74833584..74833626,+!p1@ARID3B!0.72!10.79!ARID3B;;chr5:124084466..124084484,-!p6@ZNF608!0.72!4.30!ZNF608;;chr9:126773880..126773895,+!p2@LHX2!0.72!4.30!LHX2;;chr1:170632108..170632114,+!p29@PRRX1!0.72!4.30!PRRX1;;chr7:28452103..28452108,+!p24@CREB5!0.72!4.20!CREB5;;chr7:64363638..64363667,+!p1@ZNF273!0.71!23.39!ZNF273;;chr11:47237922..47237964,+!p4@DDB2!0.71!4.90!DDB2;;chr5:124082580..124082603,-!p4@ZNF608!0.71!4.80!ZNF608;;chr18:52989001..52989030,-!p10@TCF4!0.71!4.60!TCF4;;chr9:37027156..37027193,-!p4@PAX5!0.71!4.10!PAX5;;chr19:20011744..20011770,+!p1@ZNF93!0.70!17.29!ZNF93;;chr6:106546808..106546833,+!p3@PRDM1!0.70!5.20!PRDM1;;chr6:41701581..41701613,-!p2@TFEB!0.70!4.00!TFEB;;chr10:96122645..96122675,-!p2@NOC3L!0.69!20.69!NOC3L;;chr17:41277372..41277418,-!p1@BRCA1!0.69!15.79!BRCA1;;chr18:52989081..52989117,-!p7@TCF4!0.69!6.30!TCF4;;chr8:72756267..72756296,-!p4@MSC!0.69!6.10!MSC;;chr12:103351813..103351844,+!p4@ASCL1!0.69!3.90!ASCL1;;chr1:3569101..3569115,+!p2@TP73!0.69!3.90!TP73;;chr10:96122682..96122730,-!p1@NOC3L!0.68!63.86!NOC3L;;chr19:20188776..20188826,+!p1@ZNF90!0.68!11.39!ZNF90;;chr1:170632683..170632696,+!p12@PRRX1!0.68!3.80!PRRX1;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.97!HMGA1;;chr7:77428066..77428132,+!p2@PHTF2!0.67!27.08!PHTF2;;chr7:28610060..28610073,+!p9@CREB5!0.67!3.70!CREB5;;chr8:135613849..135613883,-!p7@ZFAT!0.67!3.70!ZFAT;;chr1:3568928..3568946,+!p4@TP73!0.67!3.70!TP73;;chr19:19976683..19976709,+!p1@ZNF253!0.66!17.99!ZNF253;;chr1:3568961..3568973,+!p6@TP73!0.66!3.60!TP73;;chr5:142779999..142780026,-!p20@NR3C1!0.66!3.60!NR3C1;;chr6:152011654..152011682,+!p1@ESR1!0.66!3.60!ESR1;;chr9:2158487..2158498,+!p21@SMARCA2!0.66!3.60!SMARCA2;;chr9:3525910..3525955,-!p4@RFX3!0.65!11.69!RFX3;;chr12:51566562..51566584,-!p2@TFCP2!0.65!10.99!TFCP2;;chr5:88179195..88179224,-!p3@MEF2C!0.65!5.90!MEF2C;;chr19:926001..926046,+!p1@ARID3A!0.64!13.39!ARID3A;;chr2:231084659..231084721,-!p1@SP110!0.63!90.25!SP110;;chr14:55493763..55493824,-!p1@WDHD1!0.63!28.68!WDHD1;;chr19:45252008..45252024,+!p2@BCL3!0.63!12.29!BCL3;;chr19:20011775..20011800,+!p2@ZNF93!0.63!6.40!ZNF93;;chr1:170632723..170632739,+!p8@PRRX1!0.63!3.30!PRRX1;;chrX:47509928..47509990,-!p1@ELK1!0.62!117.13!ELK1;;chr1:117602932..117602973,+!p1@TTF2!0.62!13.69!TTF2;;chr6:12008986..12009016,+!p3@HIVEP1!0.62!11.39!HIVEP1;;chr8:135614159..135614170,-!p13@ZFAT!0.62!3.20!ZFAT;;chr17:40440359..40440386,+!p4@STAT5A!0.62!3.20!STAT5A;;chr4:109089095..109089144,-!p6@LEF1!0.62!3.20!LEF1;;chr7:64126503..64126528,+!p1@ZNF107!0.61!25.58!ZNF107;;chr5:124084493..124084524,-!p2@ZNF608!0.61!7.70!ZNF608;;chr1:23857698..23857733,-!p1@E2F2!0.61!6.30!E2F2;;chr4:87857491..87857519,+!p10@AFF1!0.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343!0.20!8.89!ZNF343;;chr19:47617013..47617069,-!p2@ZC3H4!0.20!8.00!ZC3H4;;chr19:53898380..53898422,+!p1@ZNF765!0.20!8.00!ZNF765;;chr8:28243661..28243709,-!p1@ZNF395!0.20!7.50!ZNF395;;chrX:47342565..47342638,-!p1@ZNF41!0.20!7.50!ZNF41;;chr12:80084333..80084380,-!p4@PAWR!0.20!6.30!PAWR;;chr21:30671211..30671234,+!p3@BACH1!0.20!6.20!BACH1;;chr18:72922777..72922808,+!p2@TSHZ1!0.20!6.00!TSHZ1;;chr19:47615477..47615491,-!p3@ZC3H4!0.20!5.50!ZC3H4;;chr19:40596828..40596855,-!p1@ZNF780A!0.20!5.30!ZNF780A;;chrX:129244840..129244881,-!p2@ELF4!0.20!4.70!ELF4;;chr8:86089369..86089408,+!p1@E2F5!0.20!3.10!E2F5;;chr17:1959369..1959388,+!p2@HIC1!0.20!3.00!HIC1;;chr9:3525727..3525828,-!p2@RFX3!0.20!2.90!RFX3;;chr9:128509635..128509658,+!p2@PBX3!0.20!1.90!PBX3;;chr16:31724618..31724630,+!p2@ZNF720!0.20!1.90!ZNF720;;chr19:2841497..2841523,+!p2@ZNF555!0.20!1.80!ZNF555;;chr12:6798692..6798723,-!p5@ZNF384!0.20!1.50!ZNF384;;chr15:57210759..57210775,+!p7@TCF12!0.20!1.30!TCF12;;chrX:76937858..76937877,-!p5@ATRX!0.20!1.20!ATRX;;chr22:21356345..21356367,-!p3@THAP7!0.20!1.10!THAP7;;chr10:98592751..98592765,+!p5@LCOR!0.20!1.00!LCOR;;chr9:2029144..2029164,+!p10@SMARCA2!0.20!1.00!SMARCA2;;chr7:148844205..148844236,+!p5@ZNF398!0.20!0.90!ZNF398;;chr1:6684918..6684936,+!p2@THAP3!0.20!0.90!THAP3;;chr19:50435673..50435690,+!p8@ATF5!0.20!0.60!ATF5;;chr19:53290078..53290089,-!p3@ZNF600!0.20!0.60!ZNF600;;chr1:158985686..158985719,+!p15@IFI16!0.20!0.60!IFI16;;chr1:25291275..25291301,-!p12@RUNX3!0.20!0.60!RUNX3;;chr1:61542922..61542955,+!p10@NFIA!0.20!0.60!NFIA;;chr20:52210553..52210568,-!p7@ZNF217!0.20!0.60!ZNF217;;chr5:158524951..158524969,-!p15@EBF1!0.20!0.60!EBF1;;chr6:155635647..155635658,-!p2@TFB1M!0.20!0.60!TFB1M;;chr6:28109726..28109735,+!p5@ZNF192!0.20!0.60!ZNF192;;chr7:115670804..115670825,-!p1@TFEC!0.20!0.60!TFEC;;chr7:128578070..128578077,+!p3@IRF5!0.20!0.60!IRF5;;chr7:27190547..27190591,-!p1@HOXA6!0.20!0.60!HOXA6;;chr7:99680193..99680204,-!p2@ZNF3!0.20!0.60!ZNF3;;chr8:102216978..102217003,-!p4@ZNF706!0.20!0.60!ZNF706;;chr8:28748961..28748996,+!p6@HMBOX1!0.20!0.60!HMBOX1;;chr8:72755203..72755239,-!p10@MSC!0.20!0.60!MSC;;chr2:214017053..214017065,-!p16@IKZF2!0.20!0.60!IKZF2;;chr3:189349162..189349207,+!p2@TP63!0.20!0.60!TP63;;chr9:126777702..126777716,+!p5@LHX2!0.20!0.60!LHX2;;chr10:64576035..64576046,-!p2@EGR2!0.20!0.60!EGR2;;chr10:98591637..98591643,+!p8@LCOR!0.20!0.60!LCOR;;chr14:45722418..45722426,-!p6@MIS18BP1!0.20!0.60!MIS18BP1;;chr19:20748614..20748617,-!p5@ZNF737!0.20!0.60!ZNF737;;chr22:42229100..42229146,+!p1@SREBF2!0.19!139.92!SREBF2;;chr5:131826457..131826514,-!p1@IRF1!0.19!54.37!IRF1;;chr13:20357063..20357105,-!p1@PSPC1!0.19!45.27!PSPC1;;chr11:62369291..62369351,-!p1@MTA2!0.19!25.48!MTA2;;chr2:113012592..113012671,-!p1@ZC3H8!0.19!23.59!ZC3H8;;chr11:62369229..62369289,-!p2@MTA2!0.19!19.99!MTA2;;chr6:155635583..155635644,-!p1@TFB1M!0.19!17.49!TFB1M;;chr21:30671235..30671253,+!p1@BACH1!0.19!17.29!BACH1;;chr1:151431909..151431987,-!p1@POGZ!0.19!16.09!POGZ;;chr16:3451184..3451264,+!p1@ZNF174!0.19!14.19!ZNF174;;chr3:179040767..179040866,+!p1@ZNF639!0.19!13.99!ZNF639;;chr12:53773944..53773993,+!p1@SP1!0.19!10.99!SP1;;chr5:142784003..142784065,-!p2@NR3C1!0.19!10.79!NR3C1;;chr8:135725249..135725292,-!p1@ZFAT!0.19!8.40!ZFAT;;chr17:5015129..5015187,-!p1@ZNF232!0.19!6.90!ZNF232;;chr6:41703296..41703367,-!p1@TFEB!0.19!6.30!TFEB;;chr3:129158854..129158883,-!p3@MBD4!0.19!6.30!MBD4;;chr17:47492252..47492265,-!p2@PHB!0.19!5.00!PHB;;chr2:208394817..208394834,+!p3@CREB1!0.19!4.90!CREB1;;chr19:57922521..57922550,+!p1@ZNF17!0.19!4.90!ZNF17;;chr19:9785724..9785740,-!p2@ZNF562!0.19!4.80!ZNF562;;chr18:45456800..45456886,-!p4@SMAD2!0.19!4.50!SMAD2;;chr19:37709076..37709154,+!p1@ZNF383!0.19!3.90!ZNF383;;chr1:40942922..40942997,+!p1@ZNF642!0.19!2.90!ZNF642;;chr20:306051..306096,+!p3@SOX12!0.19!2.90!SOX12;;chr17:38256932..38256965,-!p4@NR1D1!0.19!2.30!NR1D1;;chr19:21950332..21950356,-!p2@ZNF100!0.19!2.20!ZNF100;;chr5:76383070..76383117,-!p3@ZBED3!0.19!2.00!ZBED3;;chr1:35657108..35657135,-!p5@SFPQ!0.19!1.90!SFPQ;;chr19:20150268..20150298,-!p2@ZNF682!0.19!1.80!ZNF682;;chr3:107241993..107242023,+!p4@BBX!0.19!1.70!BBX;;chr10:97890262..97890298,+!p4@ZNF518A!0.19!1.70!ZNF518A;;chr1:8923998..8924033,-!p8@ENO1!0.19!1.70!ENO1;;chr16:88636835..88636846,+!p2@ZC3H18!0.19!1.60!ZC3H18;;chr19:58987786..58987805,+!p3@ZNF446!0.19!1.20!ZNF446;;chr10:43134047..43134079,-!p3@ZNF33B!0.19!1.10!ZNF33B;;chr12:11802547..11802560,+!p5@ETV6!0.19!1.10!ETV6;;chr14:24025106..24025172,-!p2@ZFHX2!0.19!1.00!ZFHX2;;chr1:211432872..211432883,+!p7@RCOR3!0.19!1.00!RCOR3;;chr19:37998036..37998098,+!p2@ZNF793!0.19!0.90!ZNF793;;chr12:80083807..80083859,-!p11@PAWR!0.19!0.90!PAWR;;chr19:19779686..19779697,+!p3@ZNF101!0.19!0.80!ZNF101;;chr19:12902289..12902307,+!p1@JUNB!0.18!320.51!JUNB;;chr2:70314601..70314622,+!p1@PCBP1!0.18!314.91!PCBP1;;chr2:219524310..219524385,-!p1@ZNF142!0.18!19.39!ZNF142;;chr1:247095194..247095235,-!p1@AHCTF1!0.18!13.99!AHCTF1;;chr19:42724436..42724507,+!p1@ZNF526!0.18!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|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0004872,UBERON:0010316
|fonse_cell_line=FF:0100104
|fonse_cell_line=FF:0100104
|fonse_cell_line_closure=FF:0100104
|fonse_cell_line_closure=FF:0100104
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/splenic%2520lymphoma%2520with%2520villous%2520lymphocytes%2520cell%2520line%253aSLVL.CNhs10741.10424-106D1.hg38.nobarcode.ctss.bed.gz
|id=FF:10424-106D1
|id=FF:10424-106D1
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100104;;UBERON:0002106
|is_a=EFO:0002091;;FF:0000210;;FF:0100104;;UBERON:0002106
|is_obsolete=
|library_id=CNhs10741
|library_id_phase_based=2:CNhs10741
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10424
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10424
|name=splenic lymphoma with villous lymphocytes cell line:SLVL
|name=splenic lymphoma with villous lymphocytes cell line:SLVL
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 61:
|profile_cagescan=NCig10068,,,
|profile_cagescan=NCig10068,,,
|profile_hcage=CNhs10741,LSID692,release008,COMPLETED
|profile_hcage=CNhs10741,LSID692,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=106
|rna_box=106
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 79:
|rna_weight_ug=57.89275
|rna_weight_ug=57.89275
|sample_age=70
|sample_age=70
|sample_category=cell lines
|sample_cell_catalog=RCB1702
|sample_cell_catalog=RCB1702
|sample_cell_line=SLVL
|sample_cell_line=SLVL
Line 69: Line 92:
|sample_ethnicity=J
|sample_ethnicity=J
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.42202881052678e-255!GO:0043227;membrane-bound organelle;2.35165351951261e-225!GO:0043231;intracellular membrane-bound organelle;6.87943248124908e-225!GO:0043226;organelle;1.82043001290804e-217!GO:0043229;intracellular organelle;1.77485129121812e-216!GO:0005737;cytoplasm;4.40205398937113e-167!GO:0044422;organelle part;6.00919918331757e-155!GO:0044446;intracellular organelle part;2.82062953455655e-153!GO:0032991;macromolecular complex;5.6616074844545e-122!GO:0044444;cytoplasmic part;1.506858654528e-116!GO:0005634;nucleus;4.90464164733894e-111!GO:0044237;cellular metabolic process;9.78904311659786e-106!GO:0044238;primary metabolic process;3.82509333503782e-105!GO:0043170;macromolecule metabolic process;8.83929858016918e-100!GO:0030529;ribonucleoprotein complex;1.01842069265278e-98!GO:0044428;nuclear part;2.87977604873823e-98!GO:0043233;organelle lumen;9.62121116395422e-94!GO:0031974;membrane-enclosed lumen;9.62121116395422e-94!GO:0003723;RNA binding;1.68261112351467e-91!GO:0005739;mitochondrion;1.46853313242211e-76!GO:0005515;protein binding;1.00419064178904e-70!GO:0043283;biopolymer metabolic process;2.51336271511372e-65!GO:0006396;RNA processing;1.59167373565912e-64!GO:0043234;protein complex;1.30203432514155e-62!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.37657736416314e-62!GO:0031981;nuclear lumen;1.16703417432487e-60!GO:0006412;translation;2.02596628336651e-59!GO:0010467;gene expression;4.98125998257511e-58!GO:0005840;ribosome;3.26363558471938e-54!GO:0044429;mitochondrial part;9.23776320212882e-53!GO:0016071;mRNA metabolic process;1.10898090869886e-50!GO:0019538;protein metabolic process;1.02615117850596e-49!GO:0031090;organelle membrane;1.21022262430954e-46!GO:0003735;structural constituent of ribosome;2.04875793099017e-46!GO:0031967;organelle envelope;3.02388773720147e-46!GO:0031975;envelope;7.3960982716281e-46!GO:0006259;DNA metabolic process;9.9961698918346e-46!GO:0044267;cellular protein metabolic process;6.99045460696092e-45!GO:0044260;cellular macromolecule metabolic process;2.7427388358309e-44!GO:0008380;RNA splicing;1.91188948644602e-43!GO:0006397;mRNA processing;1.93644726601102e-43!GO:0033036;macromolecule localization;1.9436180871374e-43!GO:0044249;cellular biosynthetic process;1.78082914021084e-41!GO:0009058;biosynthetic process;2.17651111243292e-41!GO:0009059;macromolecule biosynthetic process;4.41988715791115e-41!GO:0003676;nucleic acid binding;1.06187699060157e-40!GO:0015031;protein transport;2.11739578501396e-40!GO:0016043;cellular component organization and biogenesis;2.22154399880143e-40!GO:0033279;ribosomal subunit;2.17057650280518e-39!GO:0005654;nucleoplasm;2.91918006750037e-39!GO:0008104;protein localization;1.09547129915481e-38!GO:0045184;establishment of protein localization;3.82751647278167e-38!GO:0005829;cytosol;2.26957785218259e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.3862947135084e-37!GO:0006996;organelle organization and biogenesis;6.88198283194978e-36!GO:0046907;intracellular transport;1.87445964681414e-34!GO:0065003;macromolecular complex assembly;7.95707145861068e-34!GO:0043228;non-membrane-bound organelle;1.51169595256777e-32!GO:0043232;intracellular non-membrane-bound organelle;1.51169595256777e-32!GO:0000166;nucleotide binding;1.94244140225968e-32!GO:0005681;spliceosome;2.30309728914955e-32!GO:0007049;cell cycle;6.35653310587514e-32!GO:0005740;mitochondrial envelope;7.65816974949427e-32!GO:0006974;response to DNA damage stimulus;8.02280929700673e-32!GO:0006886;intracellular protein transport;5.33447067611035e-31!GO:0031966;mitochondrial membrane;1.28251004210915e-29!GO:0044451;nucleoplasm part;1.91286542745909e-29!GO:0019866;organelle inner membrane;3.65012708550194e-29!GO:0022607;cellular component assembly;4.93597382618567e-29!GO:0016070;RNA metabolic process;8.93301112690982e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.4476013286477e-28!GO:0044445;cytosolic part;6.40900941408256e-27!GO:0022402;cell cycle process;8.39845993349052e-27!GO:0005743;mitochondrial inner membrane;1.40402975234054e-26!GO:0006281;DNA repair;1.92486099439141e-26!GO:0051649;establishment of cellular localization;8.55969568930908e-26!GO:0051641;cellular localization;9.23788243104765e-26!GO:0031980;mitochondrial lumen;1.5252246188373e-24!GO:0005759;mitochondrial matrix;1.5252246188373e-24!GO:0044265;cellular macromolecule catabolic process;8.66247424028663e-24!GO:0006119;oxidative phosphorylation;3.28039808700284e-23!GO:0044455;mitochondrial membrane part;4.47746717694429e-23!GO:0032553;ribonucleotide binding;4.57467724917942e-23!GO:0032555;purine ribonucleotide binding;4.57467724917942e-23!GO:0006512;ubiquitin cycle;4.75673500432339e-23!GO:0017076;purine nucleotide binding;5.59165082053727e-23!GO:0005730;nucleolus;5.95995572387709e-23!GO:0005694;chromosome;6.5873041773094e-23!GO:0005524;ATP binding;7.25300944447868e-23!GO:0000278;mitotic cell cycle;1.17656638126428e-22!GO:0032559;adenyl ribonucleotide binding;2.04488235760213e-22!GO:0016462;pyrophosphatase activity;2.10916257318035e-22!GO:0017111;nucleoside-triphosphatase activity;2.11041139506425e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.64217286386913e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.24955531604053e-22!GO:0030554;adenyl nucleotide binding;4.42696399525942e-22!GO:0008134;transcription factor binding;5.99408651508411e-21!GO:0016874;ligase activity;1.2428194830512e-20!GO:0009057;macromolecule catabolic process;2.39037082632183e-20!GO:0022618;protein-RNA complex assembly;3.21629711739456e-20!GO:0043285;biopolymer catabolic process;3.52574837327897e-20!GO:0015934;large ribosomal subunit;3.56816366462565e-20!GO:0015935;small ribosomal subunit;3.63492459145317e-20!GO:0009719;response to endogenous stimulus;3.86392703799276e-20!GO:0022403;cell cycle phase;4.90869091359365e-20!GO:0000087;M phase of mitotic cell cycle;8.86772783596593e-20!GO:0044427;chromosomal part;1.06154860208111e-19!GO:0051276;chromosome organization and biogenesis;1.43325776931626e-19!GO:0007067;mitosis;2.01655955543814e-19!GO:0006260;DNA replication;2.9040817077697e-19!GO:0044248;cellular catabolic process;4.99895518551257e-19!GO:0019941;modification-dependent protein catabolic process;5.90866859125888e-19!GO:0043632;modification-dependent macromolecule catabolic process;5.90866859125888e-19!GO:0006457;protein folding;6.80373869030474e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;6.80373869030474e-19!GO:0016887;ATPase activity;1.00020419891671e-18!GO:0012501;programmed cell death;1.33860979971565e-18!GO:0044257;cellular protein catabolic process;1.40803388873241e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.45944585003997e-18!GO:0006915;apoptosis;1.85438590009756e-18!GO:0042623;ATPase activity, coupled;4.22998445680339e-18!GO:0000279;M phase;5.40395361875758e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.07634641653391e-17!GO:0012505;endomembrane system;1.22880819167497e-17!GO:0005746;mitochondrial respiratory chain;1.67877594011494e-17!GO:0051301;cell division;2.82540216883026e-17!GO:0006605;protein targeting;3.46752750280937e-17!GO:0042254;ribosome biogenesis and assembly;6.22199128745353e-17!GO:0043412;biopolymer modification;1.3676142875368e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.48006766916099e-16!GO:0000375;RNA splicing, via transesterification reactions;1.48006766916099e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.48006766916099e-16!GO:0008219;cell death;2.05069428088977e-16!GO:0016265;death;2.05069428088977e-16!GO:0005761;mitochondrial ribosome;2.70139023871474e-16!GO:0000313;organellar ribosome;2.70139023871474e-16!GO:0004386;helicase activity;3.70786469501656e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.43369105516644e-16!GO:0008135;translation factor activity, nucleic acid binding;4.58752138509522e-16!GO:0016604;nuclear body;9.72921978839998e-16!GO:0005635;nuclear envelope;1.04993846718743e-15!GO:0031965;nuclear membrane;3.10127521325141e-15!GO:0006913;nucleocytoplasmic transport;3.18703366128839e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.8386911275041e-15!GO:0003954;NADH dehydrogenase activity;3.8386911275041e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.8386911275041e-15!GO:0051169;nuclear transport;8.82638370905291e-15!GO:0044453;nuclear membrane part;9.19667282520664e-15!GO:0030163;protein catabolic process;1.79243765404762e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.4799057699503e-14!GO:0003712;transcription cofactor activity;2.64874898170567e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93051566899762e-14!GO:0051186;cofactor metabolic process;4.5177065715303e-14!GO:0051726;regulation of cell cycle;5.00799424411105e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;5.20827730211617e-14!GO:0006464;protein modification process;5.5973340267681e-14!GO:0048770;pigment granule;6.51769261842505e-14!GO:0042470;melanosome;6.51769261842505e-14!GO:0043687;post-translational protein modification;6.54125489921877e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.6924405532071e-14!GO:0042773;ATP synthesis coupled electron transport;7.6924405532071e-14!GO:0000074;regulation of progression through cell cycle;7.87289862847315e-14!GO:0006323;DNA packaging;1.15936434036637e-13!GO:0051082;unfolded protein binding;1.31094872231213e-13!GO:0050657;nucleic acid transport;1.45889941484011e-13!GO:0051236;establishment of RNA localization;1.45889941484011e-13!GO:0050658;RNA transport;1.45889941484011e-13!GO:0006403;RNA localization;1.48152986694081e-13!GO:0006399;tRNA metabolic process;1.92247081907166e-13!GO:0044432;endoplasmic reticulum part;3.09743903299052e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.85712964679694e-13!GO:0045271;respiratory chain complex I;3.85712964679694e-13!GO:0005747;mitochondrial respiratory chain complex I;3.85712964679694e-13!GO:0005643;nuclear pore;3.89386062374753e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.07411313855968e-12!GO:0003743;translation initiation factor activity;1.57428566800658e-12!GO:0008026;ATP-dependent helicase activity;1.61856524013083e-12!GO:0065002;intracellular protein transport across a membrane;1.78145557746059e-12!GO:0009259;ribonucleotide metabolic process;2.18251891763199e-12!GO:0006413;translational initiation;3.74461890146408e-12!GO:0016607;nuclear speck;4.25401946467185e-12!GO:0005783;endoplasmic reticulum;4.26276716174568e-12!GO:0006163;purine nucleotide metabolic process;5.36691925345381e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.9635217890503e-12!GO:0006446;regulation of translational initiation;1.09222970775201e-11!GO:0051028;mRNA transport;1.22223556310347e-11!GO:0006364;rRNA processing;1.23574936195672e-11!GO:0042981;regulation of apoptosis;1.24763017002207e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.42508684353233e-11!GO:0009056;catabolic process;1.5281452675197e-11!GO:0006164;purine nucleotide biosynthetic process;1.66537368186912e-11!GO:0043067;regulation of programmed cell death;1.75325064388679e-11!GO:0016568;chromatin modification;1.84442027087946e-11!GO:0006732;coenzyme metabolic process;1.99076489253041e-11!GO:0009260;ribonucleotide biosynthetic process;1.99211364710759e-11!GO:0016072;rRNA metabolic process;2.01525814476213e-11!GO:0008639;small protein conjugating enzyme activity;2.88560646920022e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.32023763520649e-11!GO:0046930;pore complex;3.88399059805706e-11!GO:0009150;purine ribonucleotide metabolic process;4.34188212352255e-11!GO:0004842;ubiquitin-protein ligase activity;5.54021113124059e-11!GO:0019787;small conjugating protein ligase activity;6.73565543980754e-11!GO:0016779;nucleotidyltransferase activity;7.19509630617019e-11!GO:0009152;purine ribonucleotide biosynthetic process;1.34605234745201e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.71318558642445e-10!GO:0043566;structure-specific DNA binding;1.92901233111482e-10!GO:0017038;protein import;2.1637972664431e-10!GO:0005789;endoplasmic reticulum membrane;2.32908697068003e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.63327965113505e-10!GO:0048193;Golgi vesicle transport;4.96462416423047e-10!GO:0006261;DNA-dependent DNA replication;5.15745892533345e-10!GO:0006461;protein complex assembly;5.19020426397778e-10!GO:0016787;hydrolase activity;5.99883549667306e-10!GO:0003697;single-stranded DNA binding;6.25412329472997e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.09624066675224e-10!GO:0007005;mitochondrion organization and biogenesis;1.54070737181954e-09!GO:0050794;regulation of cellular process;1.63130603456434e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.67306701802876e-09!GO:0000785;chromatin;1.90709458685252e-09!GO:0003713;transcription coactivator activity;2.07369331655688e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.45205875180565e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.45205875180565e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.45205875180565e-09!GO:0019829;cation-transporting ATPase activity;2.54893866777374e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.28214485781468e-09!GO:0009055;electron carrier activity;3.45500909509291e-09!GO:0043038;amino acid activation;3.57381689340056e-09!GO:0006418;tRNA aminoacylation for protein translation;3.57381689340056e-09!GO:0043039;tRNA aminoacylation;3.57381689340056e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.7524977776272e-09!GO:0006333;chromatin assembly or disassembly;5.28513320200238e-09!GO:0009615;response to virus;6.5358117346357e-09!GO:0051188;cofactor biosynthetic process;6.6143288222369e-09!GO:0005794;Golgi apparatus;8.2724415610361e-09!GO:0006366;transcription from RNA polymerase II promoter;8.8942903480797e-09!GO:0016881;acid-amino acid ligase activity;8.8942903480797e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.04218448828344e-09!GO:0015986;ATP synthesis coupled proton transport;9.46620412779501e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.46620412779501e-09!GO:0009141;nucleoside triphosphate metabolic process;1.08176317472906e-08!GO:0000075;cell cycle checkpoint;1.12135505477706e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.12135505477706e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.12135505477706e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.32594723121354e-08!GO:0065004;protein-DNA complex assembly;1.40571933054395e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.66225548669007e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.66225548669007e-08!GO:0051246;regulation of protein metabolic process;1.68353818252287e-08!GO:0016563;transcription activator activity;1.69882089837805e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.11901313651606e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.11901313651606e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.71698667859948e-08!GO:0006793;phosphorus metabolic process;3.16486511384988e-08!GO:0006796;phosphate metabolic process;3.16486511384988e-08!GO:0009060;aerobic respiration;3.43713982791222e-08!GO:0008565;protein transporter activity;4.58193425237683e-08!GO:0000245;spliceosome assembly;5.42612126188514e-08!GO:0000775;chromosome, pericentric region;6.05044079846591e-08!GO:0004298;threonine endopeptidase activity;6.81494239092841e-08!GO:0032446;protein modification by small protein conjugation;7.52712279313924e-08!GO:0016740;transferase activity;7.80038995735452e-08!GO:0006754;ATP biosynthetic process;8.16671093338606e-08!GO:0006753;nucleoside phosphate metabolic process;8.16671093338606e-08!GO:0046034;ATP metabolic process;8.65937475942696e-08!GO:0045333;cellular respiration;9.22982328753358e-08!GO:0009108;coenzyme biosynthetic process;1.12161860562412e-07!GO:0051170;nuclear import;1.3253364485211e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.74323444190322e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.81246804980146e-07!GO:0016567;protein ubiquitination;1.86783993019996e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.94316738208496e-07!GO:0016310;phosphorylation;2.18702609910366e-07!GO:0051168;nuclear export;2.36312722196212e-07!GO:0019222;regulation of metabolic process;2.54856379987386e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.60424431927708e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.8565536393822e-07!GO:0006752;group transfer coenzyme metabolic process;3.06863515228365e-07!GO:0006310;DNA recombination;3.48499345756432e-07!GO:0006606;protein import into nucleus;3.71840755581106e-07!GO:0008094;DNA-dependent ATPase activity;3.80549267147719e-07!GO:0009117;nucleotide metabolic process;3.97558912991971e-07!GO:0006099;tricarboxylic acid cycle;3.97558912991971e-07!GO:0046356;acetyl-CoA catabolic process;3.97558912991971e-07!GO:0030120;vesicle coat;4.8291309593495e-07!GO:0030662;coated vesicle membrane;4.8291309593495e-07!GO:0005819;spindle;5.03807548430954e-07!GO:0045259;proton-transporting ATP synthase complex;5.15686950746581e-07!GO:0003899;DNA-directed RNA polymerase activity;5.35307523915185e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.52254585284108e-07!GO:0005768;endosome;6.71362835671163e-07!GO:0007051;spindle organization and biogenesis;8.7370870235211e-07!GO:0016192;vesicle-mediated transport;9.53462434919941e-07!GO:0043623;cellular protein complex assembly;9.7971184930475e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.02452303330975e-06!GO:0007243;protein kinase cascade;1.05933804198026e-06!GO:0005773;vacuole;1.47137212316588e-06!GO:0003724;RNA helicase activity;1.54163387936083e-06!GO:0000323;lytic vacuole;1.68306763896748e-06!GO:0005764;lysosome;1.68306763896748e-06!GO:0048475;coated membrane;1.70044253276816e-06!GO:0030117;membrane coat;1.70044253276816e-06!GO:0006916;anti-apoptosis;1.84467214955253e-06!GO:0005657;replication fork;1.8780546226745e-06!GO:0006084;acetyl-CoA metabolic process;1.98281260950721e-06!GO:0005813;centrosome;2.4245975274098e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.02187721843819e-06!GO:0005667;transcription factor complex;3.1172062120463e-06!GO:0006401;RNA catabolic process;3.8856391357345e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.02791891066959e-06!GO:0015399;primary active transmembrane transporter activity;4.02791891066959e-06!GO:0009109;coenzyme catabolic process;4.07545038768702e-06!GO:0015630;microtubule cytoskeleton;4.25420778330311e-06!GO:0000151;ubiquitin ligase complex;4.40739118746481e-06!GO:0006302;double-strand break repair;4.5302300000622e-06!GO:0045786;negative regulation of progression through cell cycle;4.64384280241854e-06!GO:0051187;cofactor catabolic process;4.8671378415501e-06!GO:0043069;negative regulation of programmed cell death;5.50205174279596e-06!GO:0031323;regulation of cellular metabolic process;5.5486962878274e-06!GO:0005815;microtubule organizing center;5.98436396657947e-06!GO:0007059;chromosome segregation;6.10363937127568e-06!GO:0043066;negative regulation of apoptosis;6.78794396267925e-06!GO:0006613;cotranslational protein targeting to membrane;7.05759792008421e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.28012373435288e-06!GO:0051427;hormone receptor binding;7.94912100567313e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.0383212367341e-05!GO:0003690;double-stranded DNA binding;1.06438227974197e-05!GO:0007088;regulation of mitosis;1.13426400136698e-05!GO:0009165;nucleotide biosynthetic process;1.15556133994219e-05!GO:0005770;late endosome;1.26806378936414e-05!GO:0065009;regulation of a molecular function;1.43770776317806e-05!GO:0050789;regulation of biological process;1.49365298821873e-05!GO:0048523;negative regulation of cellular process;1.56076116812087e-05!GO:0019899;enzyme binding;1.58306331047239e-05!GO:0007093;mitotic cell cycle checkpoint;1.63442279926087e-05!GO:0005793;ER-Golgi intermediate compartment;1.64398472841512e-05!GO:0006402;mRNA catabolic process;1.67499332205819e-05!GO:0008033;tRNA processing;1.70523131438108e-05!GO:0051325;interphase;1.71625602547048e-05!GO:0035257;nuclear hormone receptor binding;1.71625602547048e-05!GO:0008632;apoptotic program;1.74732535884674e-05!GO:0005762;mitochondrial large ribosomal subunit;2.01345461115953e-05!GO:0000315;organellar large ribosomal subunit;2.01345461115953e-05!GO:0043065;positive regulation of apoptosis;2.04274940214392e-05!GO:0016363;nuclear matrix;2.14571791984697e-05!GO:0008168;methyltransferase activity;2.2352862128999e-05!GO:0006417;regulation of translation;2.31347142112357e-05!GO:0051329;interphase of mitotic cell cycle;2.41761835871059e-05!GO:0043021;ribonucleoprotein binding;2.42909204527706e-05!GO:0016564;transcription repressor activity;2.53643434949401e-05!GO:0003714;transcription corepressor activity;2.70046510051717e-05!GO:0006839;mitochondrial transport;2.7827561020355e-05!GO:0043068;positive regulation of programmed cell death;2.90759601680235e-05!GO:0000776;kinetochore;2.94976964479329e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;2.97065467780305e-05!GO:0031072;heat shock protein binding;3.32808805581939e-05!GO:0044452;nucleolar part;3.59714796997506e-05!GO:0031497;chromatin assembly;3.72815483579308e-05!GO:0006350;transcription;3.76605940147514e-05!GO:0006612;protein targeting to membrane;4.89050292171823e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.21090098346563e-05!GO:0003678;DNA helicase activity;5.89093576243734e-05!GO:0005798;Golgi-associated vesicle;6.39023607186702e-05!GO:0000314;organellar small ribosomal subunit;6.39023607186702e-05!GO:0005763;mitochondrial small ribosomal subunit;6.39023607186702e-05!GO:0003684;damaged DNA binding;6.39023607186702e-05!GO:0008186;RNA-dependent ATPase activity;6.58590334213797e-05!GO:0006334;nucleosome assembly;6.69222517777671e-05!GO:0030880;RNA polymerase complex;6.94183928353791e-05!GO:0048522;positive regulation of cellular process;7.6544285967709e-05!GO:0008654;phospholipid biosynthetic process;7.70523369170878e-05!GO:0016491;oxidoreductase activity;7.87670553162035e-05!GO:0031324;negative regulation of cellular metabolic process;8.10565003187174e-05!GO:0006917;induction of apoptosis;8.22182079028765e-05!GO:0007006;mitochondrial membrane organization and biogenesis;8.66190002235664e-05!GO:0004518;nuclease activity;8.94830358971342e-05!GO:0003729;mRNA binding;8.98289433261907e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.59552363911498e-05!GO:0004527;exonuclease activity;0.00011060915840279!GO:0044440;endosomal part;0.000116888078278724!GO:0010008;endosome membrane;0.000116888078278724!GO:0012502;induction of programmed cell death;0.000119023197368629!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000119820736654905!GO:0003682;chromatin binding;0.000121306818596001!GO:0006818;hydrogen transport;0.000125014813500563!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000129993059858475!GO:0000428;DNA-directed RNA polymerase complex;0.000129993059858475!GO:0006383;transcription from RNA polymerase III promoter;0.000130814376949518!GO:0048519;negative regulation of biological process;0.000136764204566337!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000142039772809194!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000145011777836429!GO:0051052;regulation of DNA metabolic process;0.000149417559654873!GO:0016251;general RNA polymerase II transcription factor activity;0.000166269430707641!GO:0006414;translational elongation;0.000192184420635861!GO:0005048;signal sequence binding;0.000193189974688872!GO:0004004;ATP-dependent RNA helicase activity;0.000202062991729186!GO:0006626;protein targeting to mitochondrion;0.000206189328853094!GO:0005885;Arp2/3 protein complex;0.000210769737701551!GO:0010468;regulation of gene expression;0.000215305610284781!GO:0015992;proton transport;0.000215578344123453!GO:0043681;protein import into mitochondrion;0.000232121797142142!GO:0051789;response to protein stimulus;0.000242599610024423!GO:0006986;response to unfolded protein;0.000242599610024423!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000250864257632228!GO:0031326;regulation of cellular biosynthetic process;0.000255049316423604!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000257280613806753!GO:0032508;DNA duplex unwinding;0.00027098307795306!GO:0032392;DNA geometric change;0.00027098307795306!GO:0051252;regulation of RNA metabolic process;0.000305829976109635!GO:0042770;DNA damage response, signal transduction;0.00031497979022841!GO:0006091;generation of precursor metabolites and energy;0.000331114008248821!GO:0046483;heterocycle metabolic process;0.000336142522451833!GO:0030658;transport vesicle membrane;0.000360588408576577!GO:0006352;transcription initiation;0.000383804883735576!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000458636503897682!GO:0005741;mitochondrial outer membrane;0.000469689560285182!GO:0031968;organelle outer membrane;0.000503912258583374!GO:0006950;response to stress;0.000508876218471007!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000508876218471007!GO:0005758;mitochondrial intermembrane space;0.000514210286347739!GO:0044431;Golgi apparatus part;0.000577429289439756!GO:0006405;RNA export from nucleus;0.000583346059761668!GO:0006611;protein export from nucleus;0.000623251269292104!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000623251269292104!GO:0030384;phosphoinositide metabolic process;0.000645296218240965!GO:0019867;outer membrane;0.000646594636756795!GO:0007052;mitotic spindle organization and biogenesis;0.00067640801675359!GO:0022890;inorganic cation transmembrane transporter activity;0.000723398208115899!GO:0006007;glucose catabolic process;0.00074201769641087!GO:0046966;thyroid hormone receptor binding;0.000745716039631788!GO:0006268;DNA unwinding during replication;0.000766169430698309!GO:0016853;isomerase activity;0.000812912656156491!GO:0042802;identical protein binding;0.000833237319323919!GO:0006338;chromatin remodeling;0.00093923892954397!GO:0047485;protein N-terminus binding;0.000972485427518118!GO:0000059;protein import into nucleus, docking;0.00101490539006837!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103406558743958!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103406558743958!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103406558743958!GO:0030660;Golgi-associated vesicle membrane;0.00111733890697692!GO:0003725;double-stranded RNA binding;0.00113167769212298!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00113729360836838!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00119436695042303!GO:0008022;protein C-terminus binding;0.00120058669472776!GO:0005637;nuclear inner membrane;0.00120750292253176!GO:0046489;phosphoinositide biosynthetic process;0.00123719049963026!GO:0009967;positive regulation of signal transduction;0.00123719049963026!GO:0045454;cell redox homeostasis;0.00123918286118632!GO:0048500;signal recognition particle;0.00123918286118632!GO:0050790;regulation of catalytic activity;0.00128145032986606!GO:0005788;endoplasmic reticulum lumen;0.00130073898533151!GO:0032200;telomere organization and biogenesis;0.00131334262461579!GO:0000723;telomere maintenance;0.00131334262461579!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00136622830516544!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00136622830516544!GO:0048471;perinuclear region of cytoplasm;0.00141595895466923!GO:0003924;GTPase activity;0.00141595895466923!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00143335154313286!GO:0006289;nucleotide-excision repair;0.00143443470255846!GO:0031970;organelle envelope lumen;0.00153296151028919!GO:0005774;vacuolar membrane;0.00158240423621492!GO:0005876;spindle microtubule;0.00158611223890548!GO:0009124;nucleoside monophosphate biosynthetic process;0.00159656715607944!GO:0009123;nucleoside monophosphate metabolic process;0.00159656715607944!GO:0051920;peroxiredoxin activity;0.00161126392218803!GO:0031124;mRNA 3'-end processing;0.00161126392218803!GO:0006891;intra-Golgi vesicle-mediated transport;0.00161126392218803!GO:0009892;negative regulation of metabolic process;0.00167241961187328!GO:0043488;regulation of mRNA stability;0.00168407503121357!GO:0043487;regulation of RNA stability;0.00168407503121357!GO:0015631;tubulin binding;0.00171992347995739!GO:0000082;G1/S transition of mitotic cell cycle;0.00175626378967274!GO:0005684;U2-dependent spliceosome;0.00177177013931873!GO:0030867;rough endoplasmic reticulum membrane;0.00178682301123672!GO:0008234;cysteine-type peptidase activity;0.00184966561195694!GO:0003711;transcription elongation regulator activity;0.00185801154138875!GO:0008637;apoptotic mitochondrial changes;0.0018845287805948!GO:0005769;early endosome;0.0019428563028568!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0019428563028568!GO:0015002;heme-copper terminal oxidase activity;0.0019428563028568!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0019428563028568!GO:0004129;cytochrome-c oxidase activity;0.0019428563028568!GO:0016481;negative regulation of transcription;0.00229319922169383!GO:0008139;nuclear localization sequence binding;0.00231443811853355!GO:0006520;amino acid metabolic process;0.00232149726280292!GO:0030518;steroid hormone receptor signaling pathway;0.00232453131417536!GO:0005525;GTP binding;0.00241457703901421!GO:0008312;7S RNA binding;0.00259825407499631!GO:0000922;spindle pole;0.00262894365718001!GO:0019783;small conjugating protein-specific protease activity;0.00263271509316368!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00281547760400207!GO:0009451;RNA modification;0.00281547760400207!GO:0004674;protein serine/threonine kinase activity;0.0028176842000127!GO:0009889;regulation of biosynthetic process;0.00292387073415309!GO:0003677;DNA binding;0.00300576239263673!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00308306242404729!GO:0016126;sterol biosynthetic process;0.00308306242404729!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00310734698532651!GO:0000209;protein polyubiquitination;0.00319857075925506!GO:0006270;DNA replication initiation;0.00319857075925506!GO:0016859;cis-trans isomerase activity;0.00321051294718608!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00321934618606989!GO:0045047;protein targeting to ER;0.00321934618606989!GO:0000049;tRNA binding;0.00327429860974181!GO:0016197;endosome transport;0.00328191370432084!GO:0004843;ubiquitin-specific protease activity;0.00345736274214275!GO:0031570;DNA integrity checkpoint;0.0035604404193813!GO:0044437;vacuolar part;0.00362134595027929!GO:0043596;nuclear replication fork;0.00363164498300571!GO:0032774;RNA biosynthetic process;0.00366672727370715!GO:0009161;ribonucleoside monophosphate metabolic process;0.00366936342235866!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00366936342235866!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00374054329768548!GO:0005765;lysosomal membrane;0.00377472029102542!GO:0000287;magnesium ion binding;0.00378901974414912!GO:0046822;regulation of nucleocytoplasmic transport;0.00387071682712749!GO:0031123;RNA 3'-end processing;0.00398083730620506!GO:0008408;3'-5' exonuclease activity;0.00413048770705651!GO:0000228;nuclear chromosome;0.00416164195280934!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00422339204495824!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00430905460446756!GO:0006351;transcription, DNA-dependent;0.00436660347583037!GO:0000070;mitotic sister chromatid segregation;0.00445972020982411!GO:0006096;glycolysis;0.00453934603851918!GO:0016272;prefoldin complex;0.00461012028965685!GO:0006275;regulation of DNA replication;0.00470618238970175!GO:0046474;glycerophospholipid biosynthetic process;0.00479319324828041!GO:0006650;glycerophospholipid metabolic process;0.00486510552910962!GO:0000819;sister chromatid segregation;0.00486510552910962!GO:0007242;intracellular signaling cascade;0.00487613222514822!GO:0019752;carboxylic acid metabolic process;0.00502153496636171!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00508829985019973!GO:0015980;energy derivation by oxidation of organic compounds;0.0052234144950774!GO:0006144;purine base metabolic process;0.00543852836991543!GO:0033673;negative regulation of kinase activity;0.00560196616314513!GO:0006469;negative regulation of protein kinase activity;0.00560196616314513!GO:0048518;positive regulation of biological process;0.00562919947049746!GO:0004221;ubiquitin thiolesterase activity;0.00564422531127287!GO:0031988;membrane-bound vesicle;0.00565268206078544!GO:0008047;enzyme activator activity;0.00567886142475964!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00567886142475964!GO:0000725;recombinational repair;0.00567886142475964!GO:0000724;double-strand break repair via homologous recombination;0.00567886142475964!GO:0030118;clathrin coat;0.00567886142475964!GO:0030521;androgen receptor signaling pathway;0.00570613061883564!GO:0030663;COPI coated vesicle membrane;0.00576769607414963!GO:0030126;COPI vesicle coat;0.00576769607414963!GO:0046365;monosaccharide catabolic process;0.0059128364800716!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00602197159176741!GO:0000786;nucleosome;0.0061062451732046!GO:0022415;viral reproductive process;0.00611123491375654!GO:0016584;nucleosome positioning;0.00620745910824166!GO:0006082;organic acid metabolic process;0.0062254368225164!GO:0004532;exoribonuclease activity;0.00629032874633445!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00629032874633445!GO:0065007;biological regulation;0.00634021900205453!GO:0000339;RNA cap binding;0.00638521065067254!GO:0019210;kinase inhibitor activity;0.00651526293108576!GO:0007050;cell cycle arrest;0.00653104071627827!GO:0042613;MHC class II protein complex;0.00654756884469021!GO:0051087;chaperone binding;0.00654756884469021!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00658151870599664!GO:0000781;chromosome, telomeric region;0.00659706303546998!GO:0016790;thiolester hydrolase activity;0.00659706303546998!GO:0051348;negative regulation of transferase activity;0.00659722862560125!GO:0008250;oligosaccharyl transferase complex;0.00666877384411687!GO:0048487;beta-tubulin binding;0.00666877384411687!GO:0050662;coenzyme binding;0.00718762719754237!GO:0000726;non-recombinational repair;0.0073960576275256!GO:0004576;oligosaccharyl transferase activity;0.00744672323726317!GO:0006695;cholesterol biosynthetic process;0.00767964009680612!GO:0006378;mRNA polyadenylation;0.00788802933505272!GO:0045449;regulation of transcription;0.00799499039177964!GO:0031902;late endosome membrane;0.00807063168931496!GO:0004860;protein kinase inhibitor activity;0.00809598627294437!GO:0009112;nucleobase metabolic process;0.00815074901357553!GO:0006308;DNA catabolic process;0.00830382872499872!GO:0006595;polyamine metabolic process;0.00838330126748966!GO:0006376;mRNA splice site selection;0.00838330126748966!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00838330126748966!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00840500985722193!GO:0000077;DNA damage checkpoint;0.00841673418742198!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00851695531698277!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00859607296964347!GO:0000139;Golgi membrane;0.00860685248386527!GO:0035258;steroid hormone receptor binding;0.00879160563010754!GO:0004003;ATP-dependent DNA helicase activity;0.00895981003340251!GO:0043022;ribosome binding;0.00940969335341551!GO:0006284;base-excision repair;0.0094764870784063!GO:0045941;positive regulation of transcription;0.00949887866075413!GO:0030134;ER to Golgi transport vesicle;0.00960807053566463!GO:0006400;tRNA modification;0.00964779209319294!GO:0019320;hexose catabolic process;0.00984537720529681!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0100625810956751!GO:0046164;alcohol catabolic process;0.0100692811634202!GO:0030125;clathrin vesicle coat;0.0105947788110881!GO:0030665;clathrin coated vesicle membrane;0.0105947788110881!GO:0030133;transport vesicle;0.0106106408279759!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0106508046856256!GO:0030137;COPI-coated vesicle;0.0108728916882527!GO:0031982;vesicle;0.0108728916882527!GO:0005832;chaperonin-containing T-complex;0.0110877282808612!GO:0000118;histone deacetylase complex;0.0111900135901491!GO:0009081;branched chain family amino acid metabolic process;0.0112653286327961!GO:0046467;membrane lipid biosynthetic process;0.0113755246512715!GO:0051656;establishment of organelle localization;0.0115754895614822!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0117311685882297!GO:0043621;protein self-association;0.0117426304050722!GO:0016023;cytoplasmic membrane-bound vesicle;0.0118235683846544!GO:0033367;protein localization in mast cell secretory granule;0.0118235683846544!GO:0033365;protein localization in organelle;0.0118235683846544!GO:0033371;T cell secretory granule organization and biogenesis;0.0118235683846544!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0118235683846544!GO:0033375;protease localization in T cell secretory granule;0.0118235683846544!GO:0042629;mast cell granule;0.0118235683846544!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0118235683846544!GO:0033364;mast cell secretory granule organization and biogenesis;0.0118235683846544!GO:0033380;granzyme B localization in T cell secretory granule;0.0118235683846544!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0118235683846544!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0118235683846544!GO:0033368;protease localization in mast cell secretory granule;0.0118235683846544!GO:0033366;protein localization in secretory granule;0.0118235683846544!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0118235683846544!GO:0033374;protein localization in T cell secretory granule;0.0118235683846544!GO:0032259;methylation;0.0120089701293163!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0123633074066937!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0123633074066937!GO:0009126;purine nucleoside monophosphate metabolic process;0.0123633074066937!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0123633074066937!GO:0043549;regulation of kinase activity;0.0123633074066937!GO:0000152;nuclear ubiquitin ligase complex;0.0123717306130895!GO:0018193;peptidyl-amino acid modification;0.0136967701721153!GO:0008180;signalosome;0.0137465042653036!GO:0008629;induction of apoptosis by intracellular signals;0.0137656430831812!GO:0018196;peptidyl-asparagine modification;0.0138185765770965!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0138185765770965!GO:0030127;COPII vesicle coat;0.0138235431629932!GO:0012507;ER to Golgi transport vesicle membrane;0.0138235431629932!GO:0006220;pyrimidine nucleotide metabolic process;0.0138235431629932!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0139521842767151!GO:0051338;regulation of transferase activity;0.0145657161933279!GO:0022411;cellular component disassembly;0.0146039214165431!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0146302299297352!GO:0051540;metal cluster binding;0.0147753579547777!GO:0051536;iron-sulfur cluster binding;0.0147753579547777!GO:0030433;ER-associated protein catabolic process;0.0148731531488717!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0148731531488717!GO:0000119;mediator complex;0.0149540166818767!GO:0042393;histone binding;0.0150865944784026!GO:0031625;ubiquitin protein ligase binding;0.0152973820458393!GO:0051539;4 iron, 4 sulfur cluster binding;0.0155633131850348!GO:0008276;protein methyltransferase activity;0.0158840212068776!GO:0051053;negative regulation of DNA metabolic process;0.0159705175693306!GO:0043601;nuclear replisome;0.0160844563754265!GO:0030894;replisome;0.0160844563754265!GO:0033116;ER-Golgi intermediate compartment membrane;0.0166579467311!GO:0006984;ER-nuclear signaling pathway;0.0168643537181107!GO:0005669;transcription factor TFIID complex;0.017114439851763!GO:0008320;protein transmembrane transporter activity;0.0171461775370878!GO:0007265;Ras protein signal transduction;0.017313205583067!GO:0008538;proteasome activator activity;0.01734143611343!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0173615579435559!GO:0003756;protein disulfide isomerase activity;0.0174388656244112!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0174388656244112!GO:0032561;guanyl ribonucleotide binding;0.0174388656244112!GO:0019001;guanyl nucleotide binding;0.0174388656244112!GO:0006506;GPI anchor biosynthetic process;0.0174459795086772!GO:0016407;acetyltransferase activity;0.0177461145941658!GO:0043284;biopolymer biosynthetic process;0.0177585196441785!GO:0030522;intracellular receptor-mediated signaling pathway;0.0179135657871253!GO:0009116;nucleoside metabolic process;0.0181625019833295!GO:0007004;telomere maintenance via telomerase;0.0185533173243439!GO:0044262;cellular carbohydrate metabolic process;0.0185904797525352!GO:0019207;kinase regulator activity;0.0186205040591507!GO:0031575;G1/S transition checkpoint;0.0186449456482107!GO:0043414;biopolymer methylation;0.0194788185604929!GO:0044438;microbody part;0.0198642632675813!GO:0044439;peroxisomal part;0.0198642632675813!GO:0006505;GPI anchor metabolic process;0.0198642632675813!GO:0022884;macromolecule transmembrane transporter activity;0.0198862967337967!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0198862967337967!GO:0000178;exosome (RNase complex);0.0205818655054448!GO:0016569;covalent chromatin modification;0.0207155676855712!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0209869099275704!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0209869099275704!GO:0006672;ceramide metabolic process;0.0214158718675087!GO:0005663;DNA replication factor C complex;0.0220614055604049!GO:0030262;apoptotic nuclear changes;0.0221050138605296!GO:0045859;regulation of protein kinase activity;0.0225660688050557!GO:0031577;spindle checkpoint;0.0230048148899809!GO:0006406;mRNA export from nucleus;0.0230329484432323!GO:0008287;protein serine/threonine phosphatase complex;0.0231411123871011!GO:0003887;DNA-directed DNA polymerase activity;0.0231645154325167!GO:0004177;aminopeptidase activity;0.0233395199430622!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0233440037565502!GO:0001836;release of cytochrome c from mitochondria;0.0234699715833121!GO:0044450;microtubule organizing center part;0.0239872693210127!GO:0008097;5S rRNA binding;0.0241002555577027!GO:0051090;regulation of transcription factor activity;0.024125359177944!GO:0007259;JAK-STAT cascade;0.0241495406321505!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0242912621790659!GO:0000792;heterochromatin;0.0242912621790659!GO:0051098;regulation of binding;0.0246095631920341!GO:0003746;translation elongation factor activity;0.0246923956738106!GO:0006497;protein amino acid lipidation;0.0248772066938583!GO:0001891;phagocytic cup;0.0249347925628538!GO:0009303;rRNA transcription;0.0249991772845143!GO:0003702;RNA polymerase II transcription factor activity;0.0250252007880638!GO:0044454;nuclear chromosome part;0.0255826256183658!GO:0007034;vacuolar transport;0.0256280597952385!GO:0007021;tubulin folding;0.0256749722872132!GO:0035267;NuA4 histone acetyltransferase complex;0.025927675086454!GO:0046128;purine ribonucleoside metabolic process;0.025927675086454!GO:0042278;purine nucleoside metabolic process;0.025927675086454!GO:0000738;DNA catabolic process, exonucleolytic;0.0261115026430446!GO:0048468;cell development;0.026496382409056!GO:0004536;deoxyribonuclease activity;0.0269742775602903!GO:0051092;activation of NF-kappaB transcription factor;0.0271866919462306!GO:0016585;chromatin remodeling complex;0.0280137474927696!GO:0031410;cytoplasmic vesicle;0.0281067743430348!GO:0016788;hydrolase activity, acting on ester bonds;0.0289281044789719!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0290321188553259!GO:0012510;trans-Golgi network transport vesicle membrane;0.0290321188553259!GO:0030041;actin filament polymerization;0.029199711185801!GO:0031903;microbody membrane;0.0293691271377818!GO:0005778;peroxisomal membrane;0.0293691271377818!GO:0019904;protein domain specific binding;0.0293927144190647!GO:0009083;branched chain family amino acid catabolic process;0.029535184007327!GO:0004402;histone acetyltransferase activity;0.0296941781375321!GO:0004468;lysine N-acetyltransferase activity;0.0296941781375321!GO:0000096;sulfur amino acid metabolic process;0.0299219972902868!GO:0030176;integral to endoplasmic reticulum membrane;0.0301660849825531!GO:0000123;histone acetyltransferase complex;0.0305263127126933!GO:0045893;positive regulation of transcription, DNA-dependent;0.0305535760397314!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0308137569609749!GO:0006278;RNA-dependent DNA replication;0.0308324392062499!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0309008852616669!GO:0005096;GTPase activator activity;0.0315305991289971!GO:0031252;leading edge;0.0316246597547614!GO:0006519;amino acid and derivative metabolic process;0.0316246597547614!GO:0043631;RNA polyadenylation;0.0316510585660356!GO:0032039;integrator complex;0.0321260523750993!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0322569470287644!GO:0000175;3'-5'-exoribonuclease activity;0.0322569470287644!GO:0005791;rough endoplasmic reticulum;0.0323840230875432!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.032669801351436!GO:0007040;lysosome organization and biogenesis;0.0331561238281597!GO:0009893;positive regulation of metabolic process;0.033429284578352!GO:0043189;H4/H2A histone acetyltransferase complex;0.0338979684206754!GO:0005652;nuclear lamina;0.0338979684206754!GO:0046426;negative regulation of JAK-STAT cascade;0.0339764018606581!GO:0005092;GDP-dissociation inhibitor activity;0.034191694641132!GO:0005784;translocon complex;0.034208108411658!GO:0006118;electron transport;0.0343011496619488!GO:0008537;proteasome activator complex;0.0355290193196903!GO:0051881;regulation of mitochondrial membrane potential;0.035678037329164!GO:0046519;sphingoid metabolic process;0.0358601717268282!GO:0051223;regulation of protein transport;0.035892118806773!GO:0005083;small GTPase regulator activity;0.0362581937342968!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0366184580551272!GO:0051640;organelle localization;0.0367868330692977!GO:0019843;rRNA binding;0.0373795542922691!GO:0044275;cellular carbohydrate catabolic process;0.0375795146264926!GO:0045045;secretory pathway;0.0376828823536016!GO:0031371;ubiquitin conjugating enzyme complex;0.0376828823536016!GO:0032404;mismatch repair complex binding;0.0380797915250067!GO:0006740;NADPH regeneration;0.0388356321978469!GO:0006098;pentose-phosphate shunt;0.0388356321978469!GO:0045936;negative regulation of phosphate metabolic process;0.0389007400927324!GO:0009066;aspartate family amino acid metabolic process;0.0394930261800847!GO:0006301;postreplication repair;0.0399948581628285!GO:0007264;small GTPase mediated signal transduction;0.0403095614012558!GO:0030119;AP-type membrane coat adaptor complex;0.0407954492274768!GO:0043624;cellular protein complex disassembly;0.0411991991277944!GO:0017134;fibroblast growth factor binding;0.0412684181658564!GO:0050178;phenylpyruvate tautomerase activity;0.0412684181658564!GO:0031325;positive regulation of cellular metabolic process;0.0419074309936048!GO:0005675;holo TFIIH complex;0.0419785135663601!GO:0030508;thiol-disulfide exchange intermediate activity;0.0424535010525698!GO:0045069;regulation of viral genome replication;0.0424971229099667!GO:0019079;viral genome replication;0.0425339785746479!GO:0006730;one-carbon compound metabolic process;0.0426570206802555!GO:0006303;double-strand break repair via nonhomologous end joining;0.0435373999779295!GO:0051452;cellular pH reduction;0.0435373999779295!GO:0051453;regulation of cellular pH;0.0435373999779295!GO:0045851;pH reduction;0.0435373999779295!GO:0042113;B cell activation;0.0438101587452633!GO:0008156;negative regulation of DNA replication;0.043988834997837!GO:0000910;cytokinesis;0.0440694776943767!GO:0008610;lipid biosynthetic process;0.0454707158157336!GO:0004214;dipeptidyl-peptidase I activity;0.0460496873928643!GO:0003727;single-stranded RNA binding;0.0460717883670751!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0460717883670751!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0462128701874928!GO:0010257;NADH dehydrogenase complex assembly;0.0462128701874928!GO:0033108;mitochondrial respiratory chain complex assembly;0.0462128701874928!GO:0045947;negative regulation of translational initiation;0.0464305189427708!GO:0030140;trans-Golgi network transport vesicle;0.0465574938717633!GO:0051059;NF-kappaB binding;0.0465997518133161!GO:0032405;MutLalpha complex binding;0.0465997518133161!GO:0046902;regulation of mitochondrial membrane permeability;0.0476358549146221!GO:0007033;vacuole organization and biogenesis;0.0478738324986293!GO:0004659;prenyltransferase activity;0.0480521159576666!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0482229246867992!GO:0045039;protein import into mitochondrial inner membrane;0.0482229246867992!GO:0004563;beta-N-acetylhexosaminidase activity;0.0482883185896014!GO:0004540;ribonuclease activity;0.0482883185896014!GO:0019058;viral infectious cycle;0.0488664355140365!GO:0046979;TAP2 binding;0.0488664355140365!GO:0046977;TAP binding;0.0488664355140365!GO:0046978;TAP1 binding;0.0488664355140365!GO:0015036;disulfide oxidoreductase activity;0.0493836662121561!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0497688011920675!GO:0005680;anaphase-promoting complex;0.0497688011920675!GO:0000793;condensed chromosome;0.0499873485625358!GO:0005869;dynactin complex;0.0499873485625358
|sample_id=10424
|sample_id=10424
|sample_note=machine failed, remainder reloaded, low amount
|sample_note=machine failed, remainder reloaded, low amount
Line 76: Line 100:
|sample_tissue=blood
|sample_tissue=blood
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|top_motifs=RORA:1.87155139459;POU5F1:1.85075531254;IRF1,2:1.77695111401;POU2F1..3:1.62967471795;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.47597662173;HOX{A4,D4}:1.39705494517;CDX1,2,4:1.3936343182;NFKB1_REL_RELA:1.38611853907;HOXA9_MEIS1:1.35975411512;E2F1..5:1.35546515361;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.33919605896;AIRE:1.32390983299;PAX6:1.32180659995;DMAP1_NCOR{1,2}_SMARC:1.31499991893;AHR_ARNT_ARNT2:1.28569381247;FOXA2:1.2572983106;MYB:1.25075592404;NKX2-2,8:1.25020016152;YY1:1.22368811676;NFY{A,B,C}:1.22259614264;TOPORS:1.15424242647;EVI1:1.11286277634;NKX6-1,2:1.04056079423;IRF7:1.00421831559;ELF1,2,4:0.975862552422;PITX1..3:0.930742691711;ELK1,4_GABP{A,B1}:0.899534387551;HBP1_HMGB_SSRP1_UBTF:0.879367352517;VSX1,2:0.847110615549;MYOD1:0.757383521225;OCT4_SOX2{dimer}:0.741603607398;POU1F1:0.731769890311;FOXP1:0.728548183822;HIF1A:0.712221439015;CUX2:0.710739218327;ZNF143:0.697754678027;NRF1:0.687925967313;SPI1:0.678971861023;GFI1:0.67668489111;ZBTB16:0.628644575574;CDC5L:0.599554679493;NR5A1,2:0.594019253878;FOXQ1:0.562065752355;RUNX1..3:0.544286737671;ALX1:0.532029559378;SPIB:0.49941765783;bHLH_family:0.449021139462;PBX1:0.371719310294;HSF1,2:0.364640014202;FOX{F1,F2,J1}:0.361758729752;LMO2:0.353826133286;FOXP3:0.33666947221;GATA6:0.320100638993;BPTF:0.30841501609;PAX3,7:0.300143959883;ATF5_CREB3:0.289700647444;TP53:0.286022963944;RBPJ:0.242691150876;TFDP1:0.23877759807;NANOG{mouse}:0.214032716737;PAX8:0.191515642283;FOXN1:0.174188537823;NKX2-1,4:0.173518051602;SREBF1,2:0.170598218789;TEF:0.156330463429;ZNF384:0.0947005290683;HES1:0.0683156130474;PAX2:0.026388098804;RFX2..5_RFXANK_RFXAP:0.0228799328265;ZEB1:0.021423447579;SNAI1..3:0.00179941392495;ETS1,2:0.000402024460678;STAT5{A,B}:-0.0045787588071;TGIF1:-0.0150393712541;BREu{core}:-0.0216084303249;SOX{8,9,10}:-0.0433990989615;IKZF2:-0.0824035647719;PDX1:-0.116721121344;HMGA1,2:-0.120229194034;ESRRA:-0.15204097329;MEF2{A,B,C,D}:-0.16962636036;PAX4:-0.174566315732;FOSL2:-0.174812127642;POU3F1..4:-0.176235586993;HNF4A_NR2F1,2:-0.182336572774;ARID5B:-0.202628050711;SPZ1:-0.204700891922;TLX2:-0.211356345213;HAND1,2:-0.218639034932;PRRX1,2:-0.220489287264;HNF1A:-0.229807492115;SOX5:-0.245687665461;CRX:-0.252972817633;HOX{A5,B5}:-0.255993897162;EN1,2:-0.276325640807;HOX{A6,A7,B6,B7}:-0.281674657864;NFE2:-0.285190644358;ONECUT1,2:-0.285594549665;GATA4:-0.356236932201;RXRA_VDR{dimer}:-0.356554729336;FOXO1,3,4:-0.35777115143;NANOG:-0.376407046922;IKZF1:-0.408274901872;FOS_FOS{B,L1}_JUN{B,D}:-0.418970309386;CREB1:-0.432014276314;ZFP161:-0.469267967706;STAT1,3:-0.502047832013;GFI1B:-0.503023953117;SOX17:-0.508057799779;MYBL2:-0.524107613256;GCM1,2:-0.53283812287;LHX3,4:-0.544692834346;RFX1:-0.545425445337;PRDM1:-0.554549304513;CEBPA,B_DDIT3:-0.574542782979;ATF2:-0.586992865496;ATF4:-0.604958224603;LEF1_TCF7_TCF7L1,2:-0.611465160956;TAL1_TCF{3,4,12}:-0.61559379376;ALX4:-0.618538166802;FOXM1:-0.619744781448;BACH2:-0.655016968914;MYFfamily:-0.676078324599;NKX3-2:-0.677069142799;DBP:-0.678480549916;UFEwm:-0.698669833921;SOX2:-0.700413044906;RREB1:-0.713473656687;NR1H4:-0.738591379158;HLF:-0.745938049364;ADNP_IRX_SIX_ZHX:-0.767707021346;ZIC1..3:-0.775373451042;NHLH1,2:-0.798004191437;AR:-0.816442577357;SMAD1..7,9:-0.818212369741;PPARG:-0.824122411458;EP300:-0.83390118126;NFIL3:-0.854881173727;ZNF148:-0.865903434253;NFATC1..3:-0.893039825448;NKX2-3_NKX2-5:-0.916499037516;NFE2L2:-0.935835018079;FOX{I1,J2}:-0.944588577521;FOXD3:-0.964436666073;SRF:-0.976184089367;FOX{D1,D2}:-0.998633880635;KLF4:-1.00818548078;NFIX:-1.00998106408;GLI1..3:-1.01172671799;ZNF238:-1.03144078578;GZF1:-1.03611261896;MED-1{core}:-1.03822560476;MZF1:-1.047692684;NR6A1:-1.04769391698;HMX1:-1.05063534575;RXR{A,B,G}:-1.05629012615;REST:-1.0587871743;MAFB:-1.0709609013;TBP:-1.07160236168;PAX1,9:-1.07526657485;TBX4,5:-1.08085288703;NR3C1:-1.0845359461;GTF2I:-1.08886673221;POU6F1:-1.09181091181;JUN:-1.1027973207;MTE{core}:-1.12118870938;NFE2L1:-1.15165846347;GTF2A1,2:-1.15552963165;NKX3-1:-1.17786090252;TFAP4:-1.22428220421;EBF1:-1.24174421307;STAT2,4,6:-1.27455415467;ESR1:-1.28132147001;MTF1:-1.33342570408;ZBTB6:-1.34294596216;ATF6:-1.43203898877;XCPE1{core}:-1.47207399395;HIC1:-1.47218227736;MAZ:-1.48042075885;TLX1..3_NFIC{dimer}:-1.48868366134;TEAD1:-1.49183302177;EGR1..3:-1.547860579;PATZ1:-1.56785195456;PAX5:-1.59364900098;TFCP2:-1.70781198814;ZNF423:-1.7416361356;XBP1:-1.80527649019;SP1:-1.85367336127;TFAP2{A,C}:-1.92950666284;TFAP2B:-1.93788323687;FOXL1:-2.08539211116;T:-2.5274837803
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10424-106D1;search_select_hide=table117:FF:10424-106D1
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:splenic lymphoma with villous lymphocytes cell line:SLVL
Species:Human (Homo sapiens)
Library ID:CNhs10741
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stage70 year old adult
sexfemale
age70
cell typeb cell
cell lineSLVL
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005168
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10741 CAGE DRX008013 DRR008885
Accession ID Hg19

Library idBAMCTSS
CNhs10741 DRZ000310 DRZ001695
Accession ID Hg38

Library idBAMCTSS
CNhs10741 DRZ011660 DRZ013045
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10068downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.206
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.516
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0414
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0523
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0369
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0924
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.23
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0.0414
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0174
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.172
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.194
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0121
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.499
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0817
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0414
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.414
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0277
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0.0791
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.204
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0.845
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10741

Jaspar motifP-value
MA0002.20.00755
MA0003.10.434
MA0004.10.023
MA0006.10.204
MA0007.10.319
MA0009.10.991
MA0014.10.946
MA0017.10.182
MA0018.20.164
MA0019.10.249
MA0024.15.72802e-5
MA0025.10.046
MA0027.10.889
MA0028.10.00197
MA0029.10.69
MA0030.10.412
MA0031.10.489
MA0035.20.956
MA0038.10.165
MA0039.20.566
MA0040.10.159
MA0041.10.156
MA0042.10.16
MA0043.10.11
MA0046.10.183
MA0047.20.966
MA0048.10.53
MA0050.15.56514e-14
MA0051.15.69981e-8
MA0052.10.547
MA0055.10.093
MA0057.10.518
MA0058.10.00795
MA0059.10.00248
MA0060.16.65793e-4
MA0061.14.38058e-9
MA0062.24.80053e-6
MA0065.20.0208
MA0066.10.609
MA0067.10.901
MA0068.10.0815
MA0069.10.471
MA0070.10.954
MA0071.10.32
MA0072.10.132
MA0073.10.775
MA0074.10.884
MA0076.11.90468e-4
MA0077.10.261
MA0078.10.2
MA0079.20.13
MA0080.21.10374e-4
MA0081.10.0416
MA0083.10.0715
MA0084.10.176
MA0087.10.469
MA0088.10.00363
MA0090.12.23316e-5
MA0091.10.888
MA0092.10.476
MA0093.10.0246
MA0099.20.135
MA0100.10.14
MA0101.19.64127e-9
MA0102.20.276
MA0103.10.107
MA0104.22.88772e-4
MA0105.11.03351e-9
MA0106.18.54524e-4
MA0107.11.09881e-8
MA0108.22.06408e-10
MA0111.10.42
MA0112.20.299
MA0113.10.551
MA0114.10.0534
MA0115.10.175
MA0116.14.8727e-5
MA0117.10.707
MA0119.10.542
MA0122.10.214
MA0124.10.496
MA0125.10.347
MA0131.10.321
MA0135.10.437
MA0136.19.41026e-5
MA0137.20.075
MA0138.20.313
MA0139.10.108
MA0140.10.468
MA0141.10.266
MA0142.10.455
MA0143.10.292
MA0144.10.0891
MA0145.10.533
MA0146.10.697
MA0147.12.05343e-4
MA0148.10.574
MA0149.10.178
MA0150.10.495
MA0152.10.526
MA0153.10.104
MA0154.10.00255
MA0155.10.631
MA0156.15.72192e-4
MA0157.10.96
MA0159.10.543
MA0160.10.0545
MA0162.10.912
MA0163.12.1868e-11
MA0164.10.466
MA0258.10.103
MA0259.10.0245



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10741

Novel motifP-value
10.00799
100.0144
1000.495
1010.195
1020.624
1030.0876
1040.433
1050.675
1060.957
1070.717
1080.747
1090.0777
110.167
1100.114
1110.0149
1120.104
1130.671
1140.207
1150.623
1160.627
1170.0188
1180.128
1190.102
120.852
1200.55
1210.363
1220.371
1231.30856e-4
1240.0615
1250.67
1260.117
1270.509
1280.347
1290.39
130.0635
1300.995
1310.221
1320.572
1330.587
1340.612
1350.571
1360.281
1370.171
1380.857
1390.218
140.692
1400.193
1410.0628
1420.65
1430.304
1440.516
1450.179
1460.426
1470.0525
1480.115
1490.529
150.0523
1500.972
1510.924
1520.0633
1530.207
1540.905
1550.0875
1560.959
1570.247
1580.315
1590.337
160.785
1600.136
1610.00795
1620.975
1630.761
1640.208
1650.788
1660.265
1670.396
1680.844
1690.722
170.546
180.466
190.949
20.498
200.369
210.161
220.986
230.325
240.174
250.188
260.0839
270.742
280.696
290.0206
30.0885
300.0791
310.765
320.733
330.741
340.632
350.126
360.0175
370.329
380.335
390.547
40.665
400.387
410.653
420.114
430.282
440.167
450.409
460.19
470.0486
480.0903
490.16
50.644
500.952
510.671
520.428
530.35
540.767
550.957
560.75
570.081
580.136
590.662
60.886
600.814
610.0826
620.122
630.548
640.267
650.799
660.1
670.584
680.335
690.794
70.108
700.443
710.0238
720.264
730.96
740.551
750.00566
760.26
770.846
780.319
790.541
80.173
800.376
810.0625
820.867
830.64
840.215
850.877
860.24
870.319
880.794
890.668
90.639
900.0153
910.89
920.838
930.877
940.493
950.0446
960.24
970.271
980.374
990.23



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10741


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002106 (spleen)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)

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