FF:10471-106I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005261 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007991;DRR008863;DRZ000288;DRZ001673;DRZ011638;DRZ013023 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100067,FF:0101120,FF:0103192,FF:0100383,FF:0103732 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100067,FF:0101120 | |fonse_cell_line=FF:0100067,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100067,FF:0101120 | |fonse_cell_line_closure=FF:0100067,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10471-106I3 | |id=FF:10471-106I3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103732 | ||
|is_obsolete= | |||
|library_id=CNhs11257 | |||
|library_id_phase_based=2:CNhs11257 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10471 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10471 | |||
|name=renal cell carcinoma cell line:TUHR10TKB | |name=renal cell carcinoma cell line:TUHR10TKB | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11257,LSID757,release008,COMPLETED | |profile_hcage=CNhs11257,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.193093817912705,0,0,0,0,1.09973094495548,0,-0.107760668121421,-0.282403560576942,0,0,0,0.0776905139722545,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.530040612165996,0,0.32184760904782,0,0,0,0,0,0,0,0,0.317399189986693,0,0,0,0,0,0,0.169601464072093,-0.0969923612426051,0,0,0.0722578368589959,0,0,0,0,0,0,0,0,0.169601464072093,0,0,0,0,0.169601464072093,0,0,0,0.137054616027697,0,0,0,0,0,0,0.130513954426052,0,0,0,0.0645773371359741,-0.126396670659822,0,0,0.169601464072093,0,0.193223218771128,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.140914726548734,0.414166608599921,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.386187635825411,0.193223218771128,0,0,0,0.169601464072093,0,0,0,0,0,0,0,-0.247178875285564,0.230430017040464,-0.182827648743174,-0.143515142523472,0.0848007320360465,0,0.21355241115334,0,0.291258570008834,0,0.0982282745088465,0.169601464072093,0,0.464043212706666,0.291258570008834,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.169601464072093,0,-0.0186252810838506,0.158570981808259,0,-0.0286287761450928,-0.0683442610773682,0,0.169601464072093,0,0,-0.270240669334324,0,0.0487219802783522,-0.0827201683234173,0.0914584498395412,-0.520025664055038,0.122796805179713,0,0,0,-0.274881446994723,-0.380462922439559,0,0,0.390271961637497,-0.181349618560659,0,0,-0.391044581551635,0,0.297568090970152,-0.0604397418968705,0,-0.0412970530221844,0,0,0.169601464072093,0,0,0.169601464072093,0,0.386187635825411,0.724256628370749,0,0,0.727291102930178,0.137054616027697,0.0169602687996785,0,0.291258570008834,0,0.00306657789407383,0,0.115795827517224,-0.0820275859477329,0.194411236221805,0.0186160374641639,-0.632936610637966,0,0.284929425027608,-0.0955129302561114,0.11757228508479,-0.24015731778337,-0.147401849371139,-0.189981719549847,0.0687845024719186,0.0394379374071092,0.274822961125577,0.0891942476524165,0.080505879084797,-0.096384318335887,-0.0595417300370487,-0.210145849844487,0,0,0,-0.0819153650383744,0,0,-0.103927078651362,0.338159499847831,-0.20640015599463,-0.200858313323028,0.020268177908568,0.44952676003527,-0.0395325284566706,-0.0712488170711832,0,0.267917907302941,0,0,0,0.0147175979275584,-0.61631064303523,-0.0857855610126836,0,-0.0199342491043144,-0.0683442610773682,0,-0.006935522371701,-0.0917664767076958,0.291258570008834,0.169601464072093,0.381302300626379,0,0,0,0,0,-0.0707050932235291,0.184764485340583,0.153332074269867,0,-0.128731104766466,0,-0.0652644739992535,0,0.543620129578757,0.32786985055519,0,0.00232750862297415,0,-0.296312778936751,0.431140606810212,-0.00567556877629483,-0.422394805391737,0.232811743197009,0.181552083888807,-0.322193015924914,-0.53506117388089,-0.619338400718134,0,-0.0881268324752877,0,-0.0255629903154224,-0.509896667549432,-0.0437342155098144,0.187075186971434,0,0.425013850800923,0,0.317944468805142,0,-0.710364666594778,-0.54043375147324,0.322451848352739,-0.0855379003245647,0,-0.674988214019963,1.30116177672487,0,0.314934778865541,0,0,0.0192343807374535,0.130513954426052,0.198999163222825,-0.138989456679195,0,-0.498821588380823,0,0,0.38270608616121,0.294564574401607,0,0.238403183160744,0.327513200849056,0.456879549044294,0.1752874965739,0.291258570008834,0,0.314379193505067,-0.100407161722077,0,-0.436326599745937,-0.0636048451378017,-0.619783323958633,-0.0837248774146629,-0.0292328279772758,-0.108622809454255,0,0,0.208659869860236,0,0.096556906986903,0,0.169601464072093,0.136306339226587,0,0,0,0,0.0697546155252335,0,0,0,0,0.0848007320360465,0,0,-0.0224685039189274,-0.354833330216448,0,-0.0904027382521514,0,0,0,0,0,-0.110803081130275,0,0.291258570008834,-1.59233083881968,0.157752601178655,-0.12301741567642,0,0,0,0,-0.0461219384813818,-0.203236562094724,0,0.159395863511202,0,0,0,0,0.443899622376784,0,0,0.230430017040464,0.145629285004417,0.23352811295517,0.107060794217011,0,0,0,-0.27695440160179,0.169601464072093,0,0,0,-0.161981597006898,0,0.0142597323894205,0.181949869937278,0,-0.316386010294101,0.0880195845252514,0,-0.058002887010584,-0.774687587218532,1.03898537619652,0,0.169601464072093,-0.0917456677177947,0,0,0.578226443868195,0,0,0.0374405596252463,0,0,0,0,0.169601464072093,0.169601464072093,0.643667247803202,0.169601464072093,0,0,0,0.169601464072093,0,0.291258570008834,0,0,0,0.291258570008834,-0.341229606964717,0.0773774074135824,0.293188544580386,0,0,0,0,0.230430017040464,0,0.121523261925514,-0.0045089272798135,0,0,0.0576032059909755,0,0,0.169601464072093,0,0,0.440598078001296,0,0,0,0,0,-0.0969923612426051,0,0,0,0.386187635825411,-0.564807121153884,0,0,-0.107760668121421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262868549789964,0.229646466376943,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.723413536149478,0,1.09973094495548,0,0.169601464072093,0,0,0,0.073642056698506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117421870181392,0,0,-0.0480843259468497,0,0,-0.147827620596996,0,0,0,0,0,0,0.161753393884179,0,0,0,0,0,0,0,0.145629285004417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00168759663115011,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.185861740148226,0,0,0,0,0,0,0.39310946900533,-0.0182000937401498,0.02226279298285,0,0,0,0.091243712521962,0,0,-0.0215409910184605,0.169601464072093,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291258570008834,0,0,0,0.169601464072093,0,0,0,0.05078936876063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,1.39087655694376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318827761420354,0,0,0,0,0,0,0,0,0.530040612165996,0,0.00234416532262438,0,0,-0.0482220752390542,0,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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=21.69075 | |rna_weight_ug=21.69075 | ||
|sample_age=69 | |sample_age=69 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1275 | |sample_cell_catalog=RCB1275 | ||
|sample_cell_line=TUHR10TKB | |sample_cell_line=TUHR10TKB | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.5333058397107e-240!GO:0043231;intracellular membrane-bound organelle;1.94981231496111e-195!GO:0043227;membrane-bound organelle;3.17010435784556e-195!GO:0043226;organelle;3.98734411697432e-193!GO:0043229;intracellular organelle;1.96119794940497e-192!GO:0005737;cytoplasm;9.11116353273923e-170!GO:0044422;organelle part;1.52081339695293e-126!GO:0044446;intracellular organelle part;3.72570099343535e-125!GO:0044444;cytoplasmic part;8.95849452068713e-122!GO:0044237;cellular metabolic process;1.94491101273504e-94!GO:0044238;primary metabolic process;3.87966151122625e-92!GO:0043170;macromolecule metabolic process;2.60702852943839e-87!GO:0005634;nucleus;5.18165527322411e-81!GO:0032991;macromolecular complex;2.17415865455004e-78!GO:0030529;ribonucleoprotein complex;1.25001128089797e-74!GO:0003723;RNA binding;5.60516775868205e-67!GO:0043233;organelle lumen;1.70586609797056e-64!GO:0031974;membrane-enclosed lumen;1.70586609797056e-64!GO:0044428;nuclear part;4.9407487219993e-63!GO:0005739;mitochondrion;3.92074742639683e-55!GO:0005515;protein binding;2.64319153601867e-52!GO:0043283;biopolymer metabolic process;3.59569851724214e-48!GO:0033036;macromolecule localization;5.09925617107001e-48!GO:0031090;organelle membrane;9.45849391890679e-48!GO:0019538;protein metabolic process;4.13883486569813e-47!GO:0015031;protein transport;1.38982649487753e-46!GO:0006396;RNA processing;7.7905214057353e-45!GO:0006412;translation;7.99492438061178e-45!GO:0045184;establishment of protein localization;1.1631755004172e-44!GO:0010467;gene expression;3.8695091153611e-44!GO:0008104;protein localization;4.31503825477263e-44!GO:0005840;ribosome;1.10094993887395e-42!GO:0044260;cellular macromolecule metabolic process;1.32184584270551e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.89936817207277e-42!GO:0044267;cellular protein metabolic process;1.49028500429504e-41!GO:0016043;cellular component organization and biogenesis;1.46734841094331e-38!GO:0031981;nuclear lumen;5.27444776024543e-38!GO:0003735;structural constituent of ribosome;1.02849753773854e-37!GO:0043234;protein complex;3.12347792444254e-37!GO:0044429;mitochondrial part;3.56920976191475e-37!GO:0046907;intracellular transport;4.64953575278275e-37!GO:0016071;mRNA metabolic process;5.1987799415227e-37!GO:0008380;RNA splicing;3.73540717657837e-36!GO:0005829;cytosol;2.03599126260846e-35!GO:0009059;macromolecule biosynthetic process;9.00886744718933e-35!GO:0009058;biosynthetic process;8.66710061415023e-34!GO:0031967;organelle envelope;1.61308079903585e-33!GO:0031975;envelope;3.48237029976073e-33!GO:0044249;cellular biosynthetic process;1.83429726334114e-32!GO:0006397;mRNA processing;3.8674726819412e-32!GO:0033279;ribosomal subunit;4.10878385310227e-32!GO:0003676;nucleic acid binding;6.38255465941176e-30!GO:0006886;intracellular protein transport;2.00194305458934e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.98640618280481e-27!GO:0065003;macromolecular complex assembly;7.34096402993265e-27!GO:0043228;non-membrane-bound organelle;2.39456408497982e-26!GO:0043232;intracellular non-membrane-bound organelle;2.39456408497982e-26!GO:0005681;spliceosome;1.25421206773365e-25!GO:0000166;nucleotide binding;2.18716300463576e-25!GO:0051649;establishment of cellular localization;2.69240501905023e-25!GO:0051641;cellular localization;3.87664169497327e-25!GO:0022607;cellular component assembly;3.55875658740537e-24!GO:0006996;organelle organization and biogenesis;5.459215229539e-24!GO:0012505;endomembrane system;8.84731202537726e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.85914289606026e-23!GO:0017111;nucleoside-triphosphatase activity;7.58422915955925e-23!GO:0016462;pyrophosphatase activity;7.74990376505997e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.41014095270871e-22!GO:0005740;mitochondrial envelope;1.62556729825145e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.69755324044079e-22!GO:0005654;nucleoplasm;2.13879282058406e-22!GO:0019866;organelle inner membrane;1.70084070924401e-21!GO:0016070;RNA metabolic process;2.44794186040294e-21!GO:0031966;mitochondrial membrane;2.79605860708079e-21!GO:0044445;cytosolic part;7.37991652184106e-21!GO:0006259;DNA metabolic process;7.83056756604613e-21!GO:0006512;ubiquitin cycle;7.95428669378989e-21!GO:0005783;endoplasmic reticulum;4.05100896726884e-20!GO:0005743;mitochondrial inner membrane;4.41978235544826e-20!GO:0044265;cellular macromolecule catabolic process;4.8085710320068e-20!GO:0006457;protein folding;1.33641101938866e-19!GO:0016874;ligase activity;2.10962829967753e-19!GO:0032553;ribonucleotide binding;4.41218428880765e-19!GO:0032555;purine ribonucleotide binding;4.41218428880765e-19!GO:0017076;purine nucleotide binding;8.04139215795813e-19!GO:0005730;nucleolus;4.87899073295576e-18!GO:0044451;nucleoplasm part;6.07196313442926e-18!GO:0031980;mitochondrial lumen;7.8683958999613e-18!GO:0005759;mitochondrial matrix;7.8683958999613e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;8.54050460637428e-18!GO:0007049;cell cycle;8.75049004030129e-18!GO:0019941;modification-dependent protein catabolic process;1.53738616080175e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.53738616080175e-17!GO:0022618;protein-RNA complex assembly;1.78561174850851e-17!GO:0043285;biopolymer catabolic process;1.87119847062431e-17!GO:0044257;cellular protein catabolic process;2.11921759852666e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.46511810985257e-17!GO:0006119;oxidative phosphorylation;2.791395827544e-17!GO:0048193;Golgi vesicle transport;4.21627305935932e-17!GO:0005794;Golgi apparatus;5.78795839770638e-17!GO:0009057;macromolecule catabolic process;6.12892907504101e-17!GO:0015935;small ribosomal subunit;8.42539635825831e-17!GO:0006974;response to DNA damage stimulus;1.46821819634069e-16!GO:0008134;transcription factor binding;1.56149752141132e-16!GO:0015934;large ribosomal subunit;2.0527672446364e-16!GO:0044455;mitochondrial membrane part;2.9277941102802e-16!GO:0044432;endoplasmic reticulum part;3.4593492860094e-16!GO:0048770;pigment granule;3.07960398285416e-15!GO:0042470;melanosome;3.07960398285416e-15!GO:0008135;translation factor activity, nucleic acid binding;5.09670232777082e-15!GO:0006915;apoptosis;6.95260407556213e-15!GO:0012501;programmed cell death;8.08366064684132e-15!GO:0006605;protein targeting;9.20579333037029e-15!GO:0005524;ATP binding;9.33327607048788e-15!GO:0030163;protein catabolic process;9.78269238716598e-15!GO:0044248;cellular catabolic process;1.707271847945e-14!GO:0051082;unfolded protein binding;3.04344831107124e-14!GO:0032559;adenyl ribonucleotide binding;3.30034672006389e-14!GO:0030554;adenyl nucleotide binding;6.66031626372809e-14!GO:0022402;cell cycle process;1.01923021488576e-13!GO:0006281;DNA repair;1.15724961461868e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.53233725646112e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.7512365638737e-13!GO:0005746;mitochondrial respiratory chain;2.33873347647796e-13!GO:0016192;vesicle-mediated transport;2.71080736819374e-13!GO:0008219;cell death;3.30769085056687e-13!GO:0016265;death;3.30769085056687e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.7883934890534e-12!GO:0000375;RNA splicing, via transesterification reactions;1.7883934890534e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.7883934890534e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.42111870799066e-12!GO:0051186;cofactor metabolic process;3.49011310116918e-12!GO:0043412;biopolymer modification;3.75730300600044e-12!GO:0009719;response to endogenous stimulus;4.05954846897441e-12!GO:0005635;nuclear envelope;4.24203424596482e-12!GO:0006913;nucleocytoplasmic transport;4.24203424596482e-12!GO:0005761;mitochondrial ribosome;4.24203424596482e-12!GO:0000313;organellar ribosome;4.24203424596482e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.57987602836213e-12!GO:0050794;regulation of cellular process;5.57987602836213e-12!GO:0000278;mitotic cell cycle;5.98120323909874e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.81927311597786e-12!GO:0005789;endoplasmic reticulum membrane;6.81927311597786e-12!GO:0016604;nuclear body;8.13437771502663e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.00146858223364e-11!GO:0003954;NADH dehydrogenase activity;1.00146858223364e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.00146858223364e-11!GO:0051169;nuclear transport;1.08422429239929e-11!GO:0016887;ATPase activity;1.12409221775085e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.51859707585853e-11!GO:0042623;ATPase activity, coupled;3.63739493121479e-11!GO:0005793;ER-Golgi intermediate compartment;3.76290065007839e-11!GO:0006413;translational initiation;3.8440495890223e-11!GO:0003743;translation initiation factor activity;5.10603917773168e-11!GO:0008639;small protein conjugating enzyme activity;5.53528174201387e-11!GO:0031965;nuclear membrane;8.29279081457391e-11!GO:0004842;ubiquitin-protein ligase activity;1.23440637837994e-10!GO:0003712;transcription cofactor activity;1.39556516701973e-10!GO:0006464;protein modification process;1.49777320646688e-10!GO:0042981;regulation of apoptosis;2.07611129857647e-10!GO:0042775;organelle ATP synthesis coupled electron transport;2.11902029236932e-10!GO:0042773;ATP synthesis coupled electron transport;2.11902029236932e-10!GO:0042254;ribosome biogenesis and assembly;2.67035983765014e-10!GO:0019787;small conjugating protein ligase activity;3.11351688186125e-10!GO:0043067;regulation of programmed cell death;3.25936697743939e-10!GO:0004386;helicase activity;3.83421582337825e-10!GO:0006446;regulation of translational initiation;4.16247633804452e-10!GO:0000087;M phase of mitotic cell cycle;4.69307606362765e-10!GO:0007067;mitosis;4.97505981666166e-10!GO:0006732;coenzyme metabolic process;4.97505981666166e-10!GO:0030964;NADH dehydrogenase complex (quinone);4.97505981666166e-10!GO:0045271;respiratory chain complex I;4.97505981666166e-10!GO:0005747;mitochondrial respiratory chain complex I;4.97505981666166e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.35723782546665e-10!GO:0051301;cell division;9.00472210328715e-10!GO:0044453;nuclear membrane part;1.07920276259984e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.69332502561292e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.05805413584153e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.43837143321858e-09!GO:0009055;electron carrier activity;3.0946681108604e-09!GO:0043687;post-translational protein modification;3.18693362371934e-09!GO:0017038;protein import;3.24578370352882e-09!GO:0016607;nuclear speck;3.53108878992087e-09!GO:0000074;regulation of progression through cell cycle;3.59306645867088e-09!GO:0051726;regulation of cell cycle;4.20696891240569e-09!GO:0006260;DNA replication;4.33255017900158e-09!GO:0003924;GTPase activity;4.33255017900158e-09!GO:0006403;RNA localization;5.37963889334023e-09!GO:0006461;protein complex assembly;8.00682468550996e-09!GO:0005694;chromosome;8.30478266953765e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.07465944592406e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.13086697548968e-08!GO:0050657;nucleic acid transport;1.16097123616705e-08!GO:0051236;establishment of RNA localization;1.16097123616705e-08!GO:0050658;RNA transport;1.16097123616705e-08!GO:0016881;acid-amino acid ligase activity;1.17570217237542e-08!GO:0022403;cell cycle phase;1.65685081272279e-08!GO:0043566;structure-specific DNA binding;2.42972804444886e-08!GO:0044431;Golgi apparatus part;2.7324304413461e-08!GO:0006399;tRNA metabolic process;2.90768360539447e-08!GO:0006163;purine nucleotide metabolic process;3.07195527438275e-08!GO:0008026;ATP-dependent helicase activity;3.1297044854012e-08!GO:0009056;catabolic process;3.50196482638379e-08!GO:0005643;nuclear pore;3.59673936736693e-08!GO:0000279;M phase;3.67748961800351e-08!GO:0065002;intracellular protein transport across a membrane;3.86178782341496e-08!GO:0006164;purine nucleotide biosynthetic process;4.78566551959576e-08!GO:0009259;ribonucleotide metabolic process;5.86034228120778e-08!GO:0009150;purine ribonucleotide metabolic process;6.58331777533929e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.43848378240639e-08!GO:0004812;aminoacyl-tRNA ligase activity;9.43848378240639e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.43848378240639e-08!GO:0051276;chromosome organization and biogenesis;9.43848378240639e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.7692470595316e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.87099823046416e-08!GO:0043038;amino acid activation;1.1770422925788e-07!GO:0006418;tRNA aminoacylation for protein translation;1.1770422925788e-07!GO:0043039;tRNA aminoacylation;1.1770422925788e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.21801183575301e-07!GO:0044427;chromosomal part;1.53825999645322e-07!GO:0016740;transferase activity;1.63923614991745e-07!GO:0005768;endosome;1.74877305733144e-07!GO:0015630;microtubule cytoskeleton;1.99278604562038e-07!GO:0007005;mitochondrion organization and biogenesis;2.37294316881501e-07!GO:0016072;rRNA metabolic process;2.37294316881501e-07!GO:0006364;rRNA processing;2.37294316881501e-07!GO:0009260;ribonucleotide biosynthetic process;2.38248496262187e-07!GO:0050789;regulation of biological process;2.70741456418507e-07!GO:0043069;negative regulation of programmed cell death;2.76020278321031e-07!GO:0030120;vesicle coat;2.94853290935331e-07!GO:0030662;coated vesicle membrane;2.94853290935331e-07!GO:0043066;negative regulation of apoptosis;3.41522570956534e-07!GO:0008565;protein transporter activity;4.29221464242315e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.43257422072155e-07!GO:0005525;GTP binding;4.58385674369021e-07!GO:0016787;hydrolase activity;4.83439047486241e-07!GO:0000139;Golgi membrane;5.40218105146347e-07!GO:0048523;negative regulation of cellular process;5.7157153459859e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.76070092551665e-07!GO:0051028;mRNA transport;7.12105332018274e-07!GO:0003697;single-stranded DNA binding;7.25171134056222e-07!GO:0051170;nuclear import;8.00985263581205e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.54753175931823e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.54753175931823e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.84592202945569e-07!GO:0051188;cofactor biosynthetic process;9.93939304264487e-07!GO:0046930;pore complex;1.01704705633284e-06!GO:0016779;nucleotidyltransferase activity;1.29129654010816e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.32212704256576e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.32212704256576e-06!GO:0000245;spliceosome assembly;1.35007058343131e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.42403470576168e-06!GO:0006606;protein import into nucleus;1.60183826213341e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.6316238061824e-06!GO:0009141;nucleoside triphosphate metabolic process;2.31370352550358e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.34646038679536e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.34646038679536e-06!GO:0015986;ATP synthesis coupled proton transport;2.38119538361096e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.38119538361096e-06!GO:0032446;protein modification by small protein conjugation;2.43164029471936e-06!GO:0006916;anti-apoptosis;2.53659359723385e-06!GO:0019222;regulation of metabolic process;2.61119114827863e-06!GO:0051246;regulation of protein metabolic process;3.13676037966158e-06!GO:0048519;negative regulation of biological process;3.22252359691705e-06!GO:0004298;threonine endopeptidase activity;3.51893365982454e-06!GO:0009108;coenzyme biosynthetic process;3.62667549550005e-06!GO:0005813;centrosome;3.7082979235597e-06!GO:0016567;protein ubiquitination;3.81042878871447e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.07860630993348e-06!GO:0048475;coated membrane;4.75665166299855e-06!GO:0030117;membrane coat;4.75665166299855e-06!GO:0005815;microtubule organizing center;4.91645212811564e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.15241909035484e-06!GO:0031988;membrane-bound vesicle;5.31036908922287e-06!GO:0016563;transcription activator activity;5.36043292995433e-06!GO:0005770;late endosome;5.48498675753469e-06!GO:0016023;cytoplasmic membrane-bound vesicle;5.98745437621414e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.45661093027846e-06!GO:0032561;guanyl ribonucleotide binding;6.5666903116469e-06!GO:0019001;guanyl nucleotide binding;6.5666903116469e-06!GO:0009117;nucleotide metabolic process;6.94579555609909e-06!GO:0016853;isomerase activity;7.6631126200787e-06!GO:0016491;oxidoreductase activity;7.91888632099508e-06!GO:0006613;cotranslational protein targeting to membrane;8.50319570484934e-06!GO:0005788;endoplasmic reticulum lumen;9.64622823346614e-06!GO:0030867;rough endoplasmic reticulum membrane;1.13989215392287e-05!GO:0046034;ATP metabolic process;1.25639994366305e-05!GO:0003714;transcription corepressor activity;1.43860247452554e-05!GO:0003713;transcription coactivator activity;1.49497800389556e-05!GO:0008654;phospholipid biosynthetic process;1.51836530968645e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.51836530968645e-05!GO:0019829;cation-transporting ATPase activity;1.55382642143378e-05!GO:0006366;transcription from RNA polymerase II promoter;1.57999546518951e-05!GO:0006323;DNA packaging;1.58712169162502e-05!GO:0031982;vesicle;1.64751827612556e-05!GO:0009060;aerobic respiration;1.68894081263058e-05!GO:0006754;ATP biosynthetic process;1.78297596893109e-05!GO:0006753;nucleoside phosphate metabolic process;1.78297596893109e-05!GO:0045259;proton-transporting ATP synthase complex;2.19276751552596e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.20531343462342e-05!GO:0045333;cellular respiration;2.38343586439051e-05!GO:0005773;vacuole;2.54696036081737e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.84071011322252e-05!GO:0031410;cytoplasmic vesicle;3.08577250211428e-05!GO:0016564;transcription repressor activity;3.58783059510073e-05!GO:0051427;hormone receptor binding;3.59329603113747e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.78967928725077e-05!GO:0000151;ubiquitin ligase complex;4.20238460350868e-05!GO:0065004;protein-DNA complex assembly;4.51044512850314e-05!GO:0043623;cellular protein complex assembly;5.04262201755015e-05!GO:0016859;cis-trans isomerase activity;5.13782636664527e-05!GO:0035257;nuclear hormone receptor binding;5.13876902789016e-05!GO:0003690;double-stranded DNA binding;5.15569998170564e-05!GO:0006891;intra-Golgi vesicle-mediated transport;6.24425287507908e-05!GO:0003724;RNA helicase activity;6.83743465881495e-05!GO:0044440;endosomal part;6.93196602124117e-05!GO:0010008;endosome membrane;6.93196602124117e-05!GO:0001666;response to hypoxia;8.70478326628422e-05!GO:0051168;nuclear export;0.000108370313988298!GO:0006402;mRNA catabolic process;0.000118405229128984!GO:0007243;protein kinase cascade;0.000119229809830145!GO:0044262;cellular carbohydrate metabolic process;0.000123793951698879!GO:0000323;lytic vacuole;0.000124063043850462!GO:0005764;lysosome;0.000124063043850462!GO:0045786;negative regulation of progression through cell cycle;0.000124361863184306!GO:0019843;rRNA binding;0.000129740105477231!GO:0046914;transition metal ion binding;0.000135395646813213!GO:0031323;regulation of cellular metabolic process;0.000135395646813213!GO:0006752;group transfer coenzyme metabolic process;0.000139557069048441!GO:0005798;Golgi-associated vesicle;0.000143445484951106!GO:0006612;protein targeting to membrane;0.00015795614558931!GO:0005819;spindle;0.000158324963000236!GO:0005769;early endosome;0.000184172797718358!GO:0046467;membrane lipid biosynthetic process;0.000185732182262577!GO:0008270;zinc ion binding;0.000196585503739023!GO:0033116;ER-Golgi intermediate compartment membrane;0.000200256747927116!GO:0051789;response to protein stimulus;0.000213597146163784!GO:0006986;response to unfolded protein;0.000213597146163784!GO:0006099;tricarboxylic acid cycle;0.000217758886562011!GO:0046356;acetyl-CoA catabolic process;0.000217758886562011!GO:0006302;double-strand break repair;0.000236653769171309!GO:0005762;mitochondrial large ribosomal subunit;0.000242483096479866!GO:0000315;organellar large ribosomal subunit;0.000242483096479866!GO:0048522;positive regulation of cellular process;0.000248934388749297!GO:0005667;transcription factor complex;0.000256945265763045!GO:0006793;phosphorus metabolic process;0.000265361423361248!GO:0006796;phosphate metabolic process;0.000265361423361248!GO:0008234;cysteine-type peptidase activity;0.000265624279312256!GO:0030133;transport vesicle;0.00026838751174979!GO:0006350;transcription;0.000287292195629934!GO:0043021;ribonucleoprotein binding;0.000292068353102465!GO:0006333;chromatin assembly or disassembly;0.000294895707090943!GO:0031324;negative regulation of cellular metabolic process;0.000308067265894164!GO:0048471;perinuclear region of cytoplasm;0.000314994723919969!GO:0043065;positive regulation of apoptosis;0.000349803480997805!GO:0009967;positive regulation of signal transduction;0.000356573047735896!GO:0031252;leading edge;0.000376156855541631!GO:0065007;biological regulation;0.000381387223271257!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000398614149634885!GO:0015399;primary active transmembrane transporter activity;0.000398614149634885!GO:0007088;regulation of mitosis;0.000398614149634885!GO:0006401;RNA catabolic process;0.000416142729013131!GO:0006084;acetyl-CoA metabolic process;0.00042034643005417!GO:0019899;enzyme binding;0.00042540876381821!GO:0006091;generation of precursor metabolites and energy;0.000426423059081243!GO:0016197;endosome transport;0.000442850169605883!GO:0006950;response to stress;0.000449946104305779!GO:0043068;positive regulation of programmed cell death;0.000515343596507888!GO:0003899;DNA-directed RNA polymerase activity;0.000532794711846737!GO:0065009;regulation of a molecular function;0.00053873638954083!GO:0007264;small GTPase mediated signal transduction;0.000548181701503907!GO:0051187;cofactor catabolic process;0.000548181701503907!GO:0015980;energy derivation by oxidation of organic compounds;0.000552736236233877!GO:0009892;negative regulation of metabolic process;0.000602640497496625!GO:0009165;nucleotide biosynthetic process;0.000650433648260656!GO:0016310;phosphorylation;0.000677826317798212!GO:0030134;ER to Golgi transport vesicle;0.00071378943075206!GO:0008250;oligosaccharyl transferase complex;0.000724887994236286!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000745082233348764!GO:0000785;chromatin;0.000821509853419699!GO:0009109;coenzyme catabolic process;0.000833115369286158!GO:0016568;chromatin modification;0.000850520830455125!GO:0000314;organellar small ribosomal subunit;0.000875298688712393!GO:0005763;mitochondrial small ribosomal subunit;0.000875298688712393!GO:0006261;DNA-dependent DNA replication;0.000903363323595107!GO:0003729;mRNA binding;0.00103655065644308!GO:0006672;ceramide metabolic process;0.00106593975689055!GO:0008186;RNA-dependent ATPase activity;0.00116636468146682!GO:0051920;peroxiredoxin activity;0.00125488317184605!GO:0045454;cell redox homeostasis;0.00132953386752064!GO:0010468;regulation of gene expression;0.00135661938249002!GO:0000075;cell cycle checkpoint;0.00142496863459137!GO:0007093;mitotic cell cycle checkpoint;0.00144020360805091!GO:0030127;COPII vesicle coat;0.00145167989905095!GO:0012507;ER to Golgi transport vesicle membrane;0.00145167989905095!GO:0000775;chromosome, pericentric region;0.00152972718952148!GO:0008632;apoptotic program;0.0015395506553496!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00160395495655244!GO:0045045;secretory pathway;0.00164426731862653!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00173247315046715!GO:0005791;rough endoplasmic reticulum;0.00180954950925706!GO:0030659;cytoplasmic vesicle membrane;0.00180954950925706!GO:0005657;replication fork;0.00184306418893445!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00188297769674588!GO:0003684;damaged DNA binding;0.00191712712352409!GO:0007051;spindle organization and biogenesis;0.00192156626901501!GO:0031968;organelle outer membrane;0.00192156626901501!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00200581663917494!GO:0046489;phosphoinositide biosynthetic process;0.00212462349766361!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0021472127278978!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0021472127278978!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0021472127278978!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00218323056518955!GO:0048500;signal recognition particle;0.00226984421196774!GO:0046474;glycerophospholipid biosynthetic process;0.00226984421196774!GO:0019867;outer membrane;0.00229719403641016!GO:0004576;oligosaccharyl transferase activity;0.00237154672880556!GO:0006892;post-Golgi vesicle-mediated transport;0.00259924630848157!GO:0006334;nucleosome assembly;0.00260338337225307!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00265118562128478!GO:0030663;COPI coated vesicle membrane;0.00267838508860201!GO:0030126;COPI vesicle coat;0.00267838508860201!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0026955111372961!GO:0046519;sphingoid metabolic process;0.00275241006164833!GO:0006414;translational elongation;0.00278669559031744!GO:0004674;protein serine/threonine kinase activity;0.00281846614826907!GO:0019318;hexose metabolic process;0.00297043485362116!GO:0004004;ATP-dependent RNA helicase activity;0.0030648853627551!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00311889030817659!GO:0003746;translation elongation factor activity;0.00315026292528009!GO:0007006;mitochondrial membrane organization and biogenesis;0.00315553857483741!GO:0004527;exonuclease activity;0.00326749865016921!GO:0006007;glucose catabolic process;0.00326749865016921!GO:0031625;ubiquitin protein ligase binding;0.00332963233138027!GO:0008637;apoptotic mitochondrial changes;0.00333884374249701!GO:0042802;identical protein binding;0.00343978096293377!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00349839525928944!GO:0009615;response to virus;0.00350836205519453!GO:0043492;ATPase activity, coupled to movement of substances;0.0035530784747823!GO:0030036;actin cytoskeleton organization and biogenesis;0.00360899239509761!GO:0005048;signal sequence binding;0.00362862065901547!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00376809948147611!GO:0006917;induction of apoptosis;0.00388703131544853!GO:0030658;transport vesicle membrane;0.00388910101172218!GO:0005996;monosaccharide metabolic process;0.00398451936343899!GO:0016363;nuclear matrix;0.00405046162227356!GO:0031497;chromatin assembly;0.00424496695420541!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00435423971848278!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00451644094049784!GO:0043681;protein import into mitochondrion;0.00451644094049784!GO:0005874;microtubule;0.00465886555107207!GO:0044452;nucleolar part;0.0046910263723763!GO:0032940;secretion by cell;0.00472434741331482!GO:0005684;U2-dependent spliceosome;0.00475069182602089!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00489940920731841!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0048996635569889!GO:0045047;protein targeting to ER;0.0048996635569889!GO:0035258;steroid hormone receptor binding;0.00492699437000907!GO:0005741;mitochondrial outer membrane;0.00497263158326118!GO:0005905;coated pit;0.00497848803857157!GO:0005885;Arp2/3 protein complex;0.00519175419195849!GO:0012502;induction of programmed cell death;0.00520700168370531!GO:0000049;tRNA binding;0.00529317967102437!GO:0008312;7S RNA binding;0.0055266094569806!GO:0004177;aminopeptidase activity;0.0056641214122641!GO:0030521;androgen receptor signaling pathway;0.0056641214122641!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00566704660401874!GO:0030137;COPI-coated vesicle;0.00568381802139622!GO:0006839;mitochondrial transport;0.005694077744906!GO:0000776;kinetochore;0.005694077744906!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00570560357257104!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00582667599474305!GO:0018196;peptidyl-asparagine modification;0.00593598967682152!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00593598967682152!GO:0051087;chaperone binding;0.00651879672908027!GO:0051540;metal cluster binding;0.00651879672908027!GO:0051536;iron-sulfur cluster binding;0.00651879672908027!GO:0007010;cytoskeleton organization and biogenesis;0.00657879597185115!GO:0048487;beta-tubulin binding;0.00665781721280069!GO:0044433;cytoplasmic vesicle part;0.00667065152480311!GO:0016584;nucleosome positioning;0.00705990506183229!GO:0032774;RNA biosynthetic process;0.00707111020492146!GO:0046822;regulation of nucleocytoplasmic transport;0.00710216440487187!GO:0008022;protein C-terminus binding;0.00725060464062912!GO:0008629;induction of apoptosis by intracellular signals;0.00728615358936596!GO:0008610;lipid biosynthetic process;0.00748035656593991!GO:0003711;transcription elongation regulator activity;0.00765154592425782!GO:0030176;integral to endoplasmic reticulum membrane;0.00768021187916024!GO:0006351;transcription, DNA-dependent;0.00772666782473878!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00776498137621811!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00777925426756564!GO:0051252;regulation of RNA metabolic process;0.00784725011968824!GO:0012506;vesicle membrane;0.00792588692913815!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00792588692913815!GO:0015002;heme-copper terminal oxidase activity;0.00792588692913815!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00792588692913815!GO:0004129;cytochrome-c oxidase activity;0.00792588692913815!GO:0006626;protein targeting to mitochondrion;0.00800220404724851!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00818061190218656!GO:0031072;heat shock protein binding;0.00860828666299123!GO:0043624;cellular protein complex disassembly;0.00860828666299123!GO:0043284;biopolymer biosynthetic process;0.00872920493134211!GO:0050681;androgen receptor binding;0.00880040121636352!GO:0048468;cell development;0.00909246282224888!GO:0016044;membrane organization and biogenesis;0.00910153814704078!GO:0006352;transcription initiation;0.00918215453648106!GO:0003677;DNA binding;0.00919436927455347!GO:0006405;RNA export from nucleus;0.00937485335324882!GO:0030660;Golgi-associated vesicle membrane;0.00973986931171914!GO:0031902;late endosome membrane;0.0101611583150368!GO:0016481;negative regulation of transcription;0.0101849310445924!GO:0051329;interphase of mitotic cell cycle;0.0102077436418133!GO:0004197;cysteine-type endopeptidase activity;0.0104693545896499!GO:0000059;protein import into nucleus, docking;0.010475665905266!GO:0006650;glycerophospholipid metabolic process;0.0111025741964831!GO:0031418;L-ascorbic acid binding;0.0111255451666021!GO:0016272;prefoldin complex;0.0114162237578665!GO:0000209;protein polyubiquitination;0.0120642488307024!GO:0031901;early endosome membrane;0.0121089109430477!GO:0046983;protein dimerization activity;0.0124065715785372!GO:0043488;regulation of mRNA stability;0.0125915406431984!GO:0043487;regulation of RNA stability;0.0125915406431984!GO:0006611;protein export from nucleus;0.0126749526384769!GO:0001836;release of cytochrome c from mitochondria;0.0129966547104624!GO:0050662;coenzyme binding;0.0131694804718281!GO:0032984;macromolecular complex disassembly;0.0135572028396505!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0138571279471012!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0138571279471012!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0138571279471012!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0146261246259068!GO:0008139;nuclear localization sequence binding;0.0146737679345286!GO:0030029;actin filament-based process;0.0150534380596525!GO:0008383;manganese superoxide dismutase activity;0.015122489933953!GO:0001315;age-dependent response to reactive oxygen species;0.015122489933953!GO:0006376;mRNA splice site selection;0.0155950723577237!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0155950723577237!GO:0030032;lamellipodium biogenesis;0.0159133683479879!GO:0006417;regulation of translation;0.016066435642044!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0166203414898989!GO:0051052;regulation of DNA metabolic process;0.0166617537155391!GO:0006096;glycolysis;0.0167805771224374!GO:0051059;NF-kappaB binding;0.0168333554408455!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0169252936833319!GO:0007030;Golgi organization and biogenesis;0.0170279901036477!GO:0004192;cathepsin D activity;0.0174032589075983!GO:0045449;regulation of transcription;0.0176495127032795!GO:0005975;carbohydrate metabolic process;0.0179002115547774!GO:0045947;negative regulation of translational initiation;0.0179002115547774!GO:0007004;telomere maintenance via telomerase;0.0179446045453185!GO:0006984;ER-nuclear signaling pathway;0.0179610620544392!GO:0006310;DNA recombination;0.0179869431902326!GO:0043022;ribosome binding;0.0183245565654445!GO:0030031;cell projection biogenesis;0.0184917107981729!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0186421195573617!GO:0050790;regulation of catalytic activity;0.0196822170139087!GO:0006904;vesicle docking during exocytosis;0.0198417824146605!GO:0008033;tRNA processing;0.0199350528014251!GO:0022406;membrane docking;0.0201987962655663!GO:0048278;vesicle docking;0.0201987962655663!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0203113049963335!GO:0016251;general RNA polymerase II transcription factor activity;0.0210911683896826!GO:0007021;tubulin folding;0.0216252177632476!GO:0015631;tubulin binding;0.0218340026729691!GO:0016301;kinase activity;0.0225988968376406!GO:0045603;positive regulation of endothelial cell differentiation;0.0228719816635928!GO:0043241;protein complex disassembly;0.0228974454961439!GO:0004300;enoyl-CoA hydratase activity;0.0228974454961439!GO:0043130;ubiquitin binding;0.0230309715969164!GO:0032182;small conjugating protein binding;0.0230309715969164!GO:0032508;DNA duplex unwinding;0.0230309715969164!GO:0032392;DNA geometric change;0.0230309715969164!GO:0048518;positive regulation of biological process;0.0236464280515551!GO:0006383;transcription from RNA polymerase III promoter;0.0236464280515551!GO:0006740;NADPH regeneration;0.0240591131212867!GO:0006098;pentose-phosphate shunt;0.0240591131212867!GO:0007040;lysosome organization and biogenesis;0.0241901850557578!GO:0005876;spindle microtubule;0.0242532520644616!GO:0000096;sulfur amino acid metabolic process;0.024364042952189!GO:0006595;polyamine metabolic process;0.0246767185327504!GO:0019752;carboxylic acid metabolic process;0.0254103533440481!GO:0051090;regulation of transcription factor activity;0.0263926081251069!GO:0006354;RNA elongation;0.0263991805512777!GO:0005637;nuclear inner membrane;0.0270298925203965!GO:0006506;GPI anchor biosynthetic process;0.0274893746124686!GO:0046966;thyroid hormone receptor binding;0.0286468400923189!GO:0046483;heterocycle metabolic process;0.0286468400923189!GO:0005521;lamin binding;0.0293084738162966!GO:0051101;regulation of DNA binding;0.0293084738162966!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.029399322592227!GO:0051287;NAD binding;0.0298905094940982!GO:0032200;telomere organization and biogenesis;0.0300327950027904!GO:0000723;telomere maintenance;0.0300327950027904!GO:0005774;vacuolar membrane;0.0300327950027904!GO:0007050;cell cycle arrest;0.0304343582157772!GO:0032507;maintenance of cellular protein localization;0.0304464687278755!GO:0030132;clathrin coat of coated pit;0.0304464687278755!GO:0022411;cellular component disassembly;0.0305471534554973!GO:0006082;organic acid metabolic process;0.0310461954999687!GO:0032594;protein transport within lipid bilayer;0.0314082483243639!GO:0032907;transforming growth factor-beta3 production;0.0314082483243639!GO:0032596;protein transport into lipid raft;0.0314082483243639!GO:0032910;regulation of transforming growth factor-beta3 production;0.0314082483243639!GO:0032595;B cell receptor transport within lipid bilayer;0.0314082483243639!GO:0033606;chemokine receptor transport within lipid bilayer;0.0314082483243639!GO:0032600;chemokine receptor transport out of lipid raft;0.0314082483243639!GO:0032599;protein transport out of lipid raft;0.0314082483243639!GO:0032597;B cell receptor transport into lipid raft;0.0314082483243639!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0314082483243639!GO:0031461;cullin-RING ubiquitin ligase complex;0.0314737495562263!GO:0008601;protein phosphatase type 2A regulator activity;0.0316425701111884!GO:0007242;intracellular signaling cascade;0.0319499937288247!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0322077135382091!GO:0042770;DNA damage response, signal transduction;0.0326185835978381!GO:0006505;GPI anchor metabolic process;0.0326185835978381!GO:0006497;protein amino acid lipidation;0.0327975650321145!GO:0006665;sphingolipid metabolic process;0.0330021181015703!GO:0051092;activation of NF-kappaB transcription factor;0.0330772654556303!GO:0030968;unfolded protein response;0.0335868187680548!GO:0006289;nucleotide-excision repair;0.0336913990641738!GO:0046365;monosaccharide catabolic process;0.0338281441986752!GO:0022890;inorganic cation transmembrane transporter activity;0.0342949192910497!GO:0030384;phosphoinositide metabolic process;0.0342949192910497!GO:0009889;regulation of biosynthetic process;0.0344083527962445!GO:0005669;transcription factor TFIID complex;0.0348245330340296!GO:0007052;mitotic spindle organization and biogenesis;0.0348568864945061!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0350623935587774!GO:0009067;aspartate family amino acid biosynthetic process;0.0356375423359589!GO:0045893;positive regulation of transcription, DNA-dependent;0.035814783604914!GO:0048144;fibroblast proliferation;0.0361389250426588!GO:0048145;regulation of fibroblast proliferation;0.0361389250426588!GO:0005784;translocon complex;0.0364477741762623!GO:0051539;4 iron, 4 sulfur cluster binding;0.0369026047395686!GO:0031326;regulation of cellular biosynthetic process;0.0370956943217605!GO:0030433;ER-associated protein catabolic process;0.0378394408633963!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0378394408633963!GO:0000922;spindle pole;0.0383440999131086!GO:0022415;viral reproductive process;0.0388179315970078!GO:0019206;nucleoside kinase activity;0.0394134528892038!GO:0006643;membrane lipid metabolic process;0.0394923865960277!GO:0030118;clathrin coat;0.0396533963373856!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0398081410532491!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0398412612122032!GO:0006769;nicotinamide metabolic process;0.0403143742791305!GO:0051325;interphase;0.0405852603309134!GO:0006144;purine base metabolic process;0.0413254184555009!GO:0005832;chaperonin-containing T-complex;0.0413869804599437!GO:0030027;lamellipodium;0.0420789612945615!GO:0004563;beta-N-acetylhexosaminidase activity;0.0428472864123695!GO:0006118;electron transport;0.0429231914405056!GO:0000118;histone deacetylase complex;0.0429231914405056!GO:0008097;5S rRNA binding;0.0430174428323158!GO:0007017;microtubule-based process;0.0438834852826678!GO:0008408;3'-5' exonuclease activity;0.0448719938028704!GO:0019783;small conjugating protein-specific protease activity;0.0448719938028704!GO:0016860;intramolecular oxidoreductase activity;0.0453028717324343!GO:0019320;hexose catabolic process;0.0453028717324343!GO:0042147;retrograde transport, endosome to Golgi;0.0456858898206111!GO:0006701;progesterone biosynthetic process;0.0457616267940558!GO:0008094;DNA-dependent ATPase activity;0.0458868111489948!GO:0006733;oxidoreduction coenzyme metabolic process;0.046309301635993!GO:0000062;acyl-CoA binding;0.0465339053136428!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0465339053136428!GO:0030880;RNA polymerase complex;0.0471902103580323!GO:0046979;TAP2 binding;0.0474201442145747!GO:0046977;TAP binding;0.0474201442145747!GO:0046978;TAP1 binding;0.0474201442145747!GO:0030518;steroid hormone receptor signaling pathway;0.0475243063360551!GO:0030125;clathrin vesicle coat;0.0484343805921251!GO:0030665;clathrin coated vesicle membrane;0.0484343805921251!GO:0007059;chromosome segregation;0.0486209531653038!GO:0051881;regulation of mitochondrial membrane potential;0.0490752054390625!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0492319159432091!GO:0008361;regulation of cell size;0.0498998941260385!GO:0005758;mitochondrial intermembrane space;0.0498998941260385 | |||
|sample_id=10471 | |sample_id=10471 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=HIF1A:2.68710315906;PITX1..3:2.13435977508;ZBTB16:2.10102358872;POU1F1:1.76055324289;FOXQ1:1.61013812806;EVI1:1.57734213398;NKX6-1,2:1.43224850076;PDX1:1.36378147159;AHR_ARNT_ARNT2:1.21850732618;IRF1,2:1.21779983721;NKX2-3_NKX2-5:1.15938870595;LHX3,4:1.14928351728;FOXD3:1.14089107767;HNF1A:1.14061549349;FOXP1:1.13555464927;bHLH_family:1.09149752643;PBX1:1.08408359509;XCPE1{core}:1.07817750875;TEF:1.05173686967;ONECUT1,2:1.01854655465;SP1:1.01461089148;PPARG:0.982890525679;ADNP_IRX_SIX_ZHX:0.981820238914;IKZF2:0.927671074033;ATF6:0.923556445756;DBP:0.914111783597;NR6A1:0.905444188013;RBPJ:0.903534852992;FOX{D1,D2}:0.867946507803;CDX1,2,4:0.848707052257;AIRE:0.848671845211;HES1:0.835560769583;BPTF:0.786931951509;EP300:0.765772132557;IRF7:0.756322477673;HBP1_HMGB_SSRP1_UBTF:0.75313099504;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.733495714072;LMO2:0.718474966602;NFKB1_REL_RELA:0.662480199271;STAT1,3:0.658984431024;HNF4A_NR2F1,2:0.611786421636;CDC5L:0.601614307953;EN1,2:0.599351646118;ELK1,4_GABP{A,B1}:0.574001285028;TP53:0.567856527894;FOX{F1,F2,J1}:0.504547248476;NRF1:0.498109210376;HMGA1,2:0.489974723059;STAT5{A,B}:0.48068657009;TOPORS:0.466830800069;HOXA9_MEIS1:0.429173084407;HSF1,2:0.408449251581;RXRA_VDR{dimer}:0.40753918704;UFEwm:0.388381939079;RREB1:0.385810221979;HAND1,2:0.377908651413;EBF1:0.36713624629;MYB:0.356204082018;ZNF384:0.35545836084;STAT2,4,6:0.322882975649;FOXP3:0.307113054204;ZNF423:0.263222822325;NKX2-2,8:0.251922330083;OCT4_SOX2{dimer}:0.213829941286;RXR{A,B,G}:0.187391491823;ZNF143:0.17773786867;SNAI1..3:0.169655193791;ZIC1..3:0.167001040449;ZEB1:0.15918798158;PAX4:0.146615304436;NKX2-1,4:0.122829153272;FOXO1,3,4:0.0994040011963;TLX2:0.0897752591913;FOXL1:0.038660975004;NFE2:0.0352548868968;MYOD1:0.00941751197285;XBP1:0.00474833313891;POU3F1..4:0.00128864392857;TEAD1:-0.000161216065254;ATF2:-0.0172969849601;PAX1,9:-0.0214919288745;ALX1:-0.0368236991869;RFX1:-0.0470315862884;NR3C1:-0.0718767953962;HOX{A6,A7,B6,B7}:-0.0746660359662;E2F1..5:-0.0909812400388;ALX4:-0.0963984697889;FOSL2:-0.0992333116452;ATF4:-0.100969983788;ATF5_CREB3:-0.116127468792;NFY{A,B,C}:-0.124584256771;PAX6:-0.143127691002;FOXM1:-0.150397378953;BACH2:-0.151552763414;CEBPA,B_DDIT3:-0.159555331645;FOS_FOS{B,L1}_JUN{B,D}:-0.160385724402;PRRX1,2:-0.174990633998;PAX2:-0.207947302912;ZFP161:-0.252198848388;CUX2:-0.285138846224;TAL1_TCF{3,4,12}:-0.285241242981;FOXN1:-0.287570017253;NKX3-1:-0.288316444821;GFI1:-0.291837712187;RORA:-0.302455365854;MTF1:-0.313781516344;POU5F1:-0.321478626304;PRDM1:-0.32779752185;NFE2L1:-0.350308559784;GTF2I:-0.36538008877;ESRRA:-0.374472415907;NR5A1,2:-0.383351724174;MEF2{A,B,C,D}:-0.38563546267;SOX5:-0.387843869893;ZBTB6:-0.409467445496;ZNF148:-0.423737994178;ELF1,2,4:-0.424722090518;NKX3-2:-0.426750680033;RFX2..5_RFXANK_RFXAP:-0.431915119477;KLF4:-0.447997365043;ARID5B:-0.45358767182;NFIL3:-0.459349244266;GFI1B:-0.487249829731;NFE2L2:-0.493328988512;POU6F1:-0.49494550274;SREBF1,2:-0.5057598178;CREB1:-0.514940788232;GATA6:-0.524919798909;TBP:-0.529593991613;PATZ1:-0.541736493353;POU2F1..3:-0.545310820978;HLF:-0.546739831458;IKZF1:-0.559928385459;DMAP1_NCOR{1,2}_SMARC:-0.599297947727;NANOG:-0.601237076533;MZF1:-0.612787968446;TFAP2{A,C}:-0.618799944934;REST:-0.62932270278;GZF1:-0.629329791892;HOX{A5,B5}:-0.634897219271;RUNX1..3:-0.648855073184;SMAD1..7,9:-0.66138664329;NFATC1..3:-0.6659581179;MYFfamily:-0.667620722351;MAZ:-0.669826517296;TBX4,5:-0.687417346248;SPI1:-0.701888005173;MTE{core}:-0.712293576567;HOX{A4,D4}:-0.751958649172;MYBL2:-0.752036924589;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.75543945909;ESR1:-0.762972357254;FOXA2:-0.763074687903;SPIB:-0.772566533247;NFIX:-0.773269400263;SOX2:-0.775856539458;ETS1,2:-0.78936865632;GLI1..3:-0.803100648802;TLX1..3_NFIC{dimer}:-0.824263170864;HIC1:-0.82732554917;LEF1_TCF7_TCF7L1,2:-0.831038855709;AR:-0.832522398994;SOX{8,9,10}:-0.833329823812;TGIF1:-0.900729865214;PAX3,7:-0.987188775378;SRF:-1.00254402562;TFAP2B:-1.01613472456;YY1:-1.08017476666;JUN:-1.11982517804;PAX5:-1.12017232417;BREu{core}:-1.12404760328;SOX17:-1.12868413202;EGR1..3:-1.15486629101;GATA4:-1.20073089227;T:-1.25353350606;TFCP2:-1.26098035068;VSX1,2:-1.27341818943;MED-1{core}:-1.27904949335;GTF2A1,2:-1.28397216489;SPZ1:-1.34200368241;CRX:-1.35034387066;ZNF238:-1.36643122655;FOX{I1,J2}:-1.36937685083;NHLH1,2:-1.37809574479;TFDP1:-1.37888049482;MAFB:-1.38098995239;PAX8:-1.41466247286;NR1H4:-1.63863089806;GCM1,2:-1.66260760959;HMX1:-1.9341108074;NANOG{mouse}:-2.25309767987;TFAP4:-2.43762009262 | |top_motifs=HIF1A:2.68710315906;PITX1..3:2.13435977508;ZBTB16:2.10102358872;POU1F1:1.76055324289;FOXQ1:1.61013812806;EVI1:1.57734213398;NKX6-1,2:1.43224850076;PDX1:1.36378147159;AHR_ARNT_ARNT2:1.21850732618;IRF1,2:1.21779983721;NKX2-3_NKX2-5:1.15938870595;LHX3,4:1.14928351728;FOXD3:1.14089107767;HNF1A:1.14061549349;FOXP1:1.13555464927;bHLH_family:1.09149752643;PBX1:1.08408359509;XCPE1{core}:1.07817750875;TEF:1.05173686967;ONECUT1,2:1.01854655465;SP1:1.01461089148;PPARG:0.982890525679;ADNP_IRX_SIX_ZHX:0.981820238914;IKZF2:0.927671074033;ATF6:0.923556445756;DBP:0.914111783597;NR6A1:0.905444188013;RBPJ:0.903534852992;FOX{D1,D2}:0.867946507803;CDX1,2,4:0.848707052257;AIRE:0.848671845211;HES1:0.835560769583;BPTF:0.786931951509;EP300:0.765772132557;IRF7:0.756322477673;HBP1_HMGB_SSRP1_UBTF:0.75313099504;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.733495714072;LMO2:0.718474966602;NFKB1_REL_RELA:0.662480199271;STAT1,3:0.658984431024;HNF4A_NR2F1,2:0.611786421636;CDC5L:0.601614307953;EN1,2:0.599351646118;ELK1,4_GABP{A,B1}:0.574001285028;TP53:0.567856527894;FOX{F1,F2,J1}:0.504547248476;NRF1:0.498109210376;HMGA1,2:0.489974723059;STAT5{A,B}:0.48068657009;TOPORS:0.466830800069;HOXA9_MEIS1:0.429173084407;HSF1,2:0.408449251581;RXRA_VDR{dimer}:0.40753918704;UFEwm:0.388381939079;RREB1:0.385810221979;HAND1,2:0.377908651413;EBF1:0.36713624629;MYB:0.356204082018;ZNF384:0.35545836084;STAT2,4,6:0.322882975649;FOXP3:0.307113054204;ZNF423:0.263222822325;NKX2-2,8:0.251922330083;OCT4_SOX2{dimer}:0.213829941286;RXR{A,B,G}:0.187391491823;ZNF143:0.17773786867;SNAI1..3:0.169655193791;ZIC1..3:0.167001040449;ZEB1:0.15918798158;PAX4:0.146615304436;NKX2-1,4:0.122829153272;FOXO1,3,4:0.0994040011963;TLX2:0.0897752591913;FOXL1:0.038660975004;NFE2:0.0352548868968;MYOD1:0.00941751197285;XBP1:0.00474833313891;POU3F1..4:0.00128864392857;TEAD1:-0.000161216065254;ATF2:-0.0172969849601;PAX1,9:-0.0214919288745;ALX1:-0.0368236991869;RFX1:-0.0470315862884;NR3C1:-0.0718767953962;HOX{A6,A7,B6,B7}:-0.0746660359662;E2F1..5:-0.0909812400388;ALX4:-0.0963984697889;FOSL2:-0.0992333116452;ATF4:-0.100969983788;ATF5_CREB3:-0.116127468792;NFY{A,B,C}:-0.124584256771;PAX6:-0.143127691002;FOXM1:-0.150397378953;BACH2:-0.151552763414;CEBPA,B_DDIT3:-0.159555331645;FOS_FOS{B,L1}_JUN{B,D}:-0.160385724402;PRRX1,2:-0.174990633998;PAX2:-0.207947302912;ZFP161:-0.252198848388;CUX2:-0.285138846224;TAL1_TCF{3,4,12}:-0.285241242981;FOXN1:-0.287570017253;NKX3-1:-0.288316444821;GFI1:-0.291837712187;RORA:-0.302455365854;MTF1:-0.313781516344;POU5F1:-0.321478626304;PRDM1:-0.32779752185;NFE2L1:-0.350308559784;GTF2I:-0.36538008877;ESRRA:-0.374472415907;NR5A1,2:-0.383351724174;MEF2{A,B,C,D}:-0.38563546267;SOX5:-0.387843869893;ZBTB6:-0.409467445496;ZNF148:-0.423737994178;ELF1,2,4:-0.424722090518;NKX3-2:-0.426750680033;RFX2..5_RFXANK_RFXAP:-0.431915119477;KLF4:-0.447997365043;ARID5B:-0.45358767182;NFIL3:-0.459349244266;GFI1B:-0.487249829731;NFE2L2:-0.493328988512;POU6F1:-0.49494550274;SREBF1,2:-0.5057598178;CREB1:-0.514940788232;GATA6:-0.524919798909;TBP:-0.529593991613;PATZ1:-0.541736493353;POU2F1..3:-0.545310820978;HLF:-0.546739831458;IKZF1:-0.559928385459;DMAP1_NCOR{1,2}_SMARC:-0.599297947727;NANOG:-0.601237076533;MZF1:-0.612787968446;TFAP2{A,C}:-0.618799944934;REST:-0.62932270278;GZF1:-0.629329791892;HOX{A5,B5}:-0.634897219271;RUNX1..3:-0.648855073184;SMAD1..7,9:-0.66138664329;NFATC1..3:-0.6659581179;MYFfamily:-0.667620722351;MAZ:-0.669826517296;TBX4,5:-0.687417346248;SPI1:-0.701888005173;MTE{core}:-0.712293576567;HOX{A4,D4}:-0.751958649172;MYBL2:-0.752036924589;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.75543945909;ESR1:-0.762972357254;FOXA2:-0.763074687903;SPIB:-0.772566533247;NFIX:-0.773269400263;SOX2:-0.775856539458;ETS1,2:-0.78936865632;GLI1..3:-0.803100648802;TLX1..3_NFIC{dimer}:-0.824263170864;HIC1:-0.82732554917;LEF1_TCF7_TCF7L1,2:-0.831038855709;AR:-0.832522398994;SOX{8,9,10}:-0.833329823812;TGIF1:-0.900729865214;PAX3,7:-0.987188775378;SRF:-1.00254402562;TFAP2B:-1.01613472456;YY1:-1.08017476666;JUN:-1.11982517804;PAX5:-1.12017232417;BREu{core}:-1.12404760328;SOX17:-1.12868413202;EGR1..3:-1.15486629101;GATA4:-1.20073089227;T:-1.25353350606;TFCP2:-1.26098035068;VSX1,2:-1.27341818943;MED-1{core}:-1.27904949335;GTF2A1,2:-1.28397216489;SPZ1:-1.34200368241;CRX:-1.35034387066;ZNF238:-1.36643122655;FOX{I1,J2}:-1.36937685083;NHLH1,2:-1.37809574479;TFDP1:-1.37888049482;MAFB:-1.38098995239;PAX8:-1.41466247286;NR1H4:-1.63863089806;GCM1,2:-1.66260760959;HMX1:-1.9341108074;NANOG{mouse}:-2.25309767987;TFAP4:-2.43762009262 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10471-106I3;search_select_hide=table117:FF:10471-106I3 | |||
}} | }} | ||
Latest revision as of 14:25, 3 June 2020
| Name: | renal cell carcinoma cell line:TUHR10TKB |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11257 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11257
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11257
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.25 |
| 10 | 10 | 0.0763 |
| 100 | 100 | 0.00731 |
| 101 | 101 | 0.132 |
| 102 | 102 | 0.826 |
| 103 | 103 | 0.314 |
| 104 | 104 | 0.622 |
| 105 | 105 | 0.752 |
| 106 | 106 | 0.113 |
| 107 | 107 | 0.364 |
| 108 | 108 | 0.747 |
| 109 | 109 | 0.189 |
| 11 | 11 | 0.969 |
| 110 | 110 | 0.0372 |
| 111 | 111 | 0.153 |
| 112 | 112 | 0.379 |
| 113 | 113 | 0.276 |
| 114 | 114 | 0.684 |
| 115 | 115 | 0.797 |
| 116 | 116 | 0.882 |
| 117 | 117 | 0.0179 |
| 118 | 118 | 0.00138 |
| 119 | 119 | 0.385 |
| 12 | 12 | 0.115 |
| 120 | 120 | 0.655 |
| 121 | 121 | 0.834 |
| 122 | 122 | 0.0631 |
| 123 | 123 | 0.428 |
| 124 | 124 | 0.585 |
| 125 | 125 | 0.452 |
| 126 | 126 | 0.498 |
| 127 | 127 | 0.77 |
| 128 | 128 | 0.0823 |
| 129 | 129 | 0.447 |
| 13 | 13 | 3.63333e-4 |
| 130 | 130 | 0.122 |
| 131 | 131 | 0.762 |
| 132 | 132 | 0.47 |
| 133 | 133 | 0.161 |
| 134 | 134 | 0.192 |
| 135 | 135 | 0.0119 |
| 136 | 136 | 0.712 |
| 137 | 137 | 0.546 |
| 138 | 138 | 0.913 |
| 139 | 139 | 0.76 |
| 14 | 14 | 0.66 |
| 140 | 140 | 0.144 |
| 141 | 141 | 0.896 |
| 142 | 142 | 0.133 |
| 143 | 143 | 0.247 |
| 144 | 144 | 0.804 |
| 145 | 145 | 0.606 |
| 146 | 146 | 0.205 |
| 147 | 147 | 0.418 |
| 148 | 148 | 0.554 |
| 149 | 149 | 0.607 |
| 15 | 15 | 0.328 |
| 150 | 150 | 0.743 |
| 151 | 151 | 0.934 |
| 152 | 152 | 0.71 |
| 153 | 153 | 0.446 |
| 154 | 154 | 0.954 |
| 155 | 155 | 0.469 |
| 156 | 156 | 0.984 |
| 157 | 157 | 0.405 |
| 158 | 158 | 0.39 |
| 159 | 159 | 0.264 |
| 16 | 16 | 0.957 |
| 160 | 160 | 0.0819 |
| 161 | 161 | 0.346 |
| 162 | 162 | 0.528 |
| 163 | 163 | 0.191 |
| 164 | 164 | 0.0139 |
| 165 | 165 | 0.436 |
| 166 | 166 | 0.146 |
| 167 | 167 | 0.381 |
| 168 | 168 | 0.0976 |
| 169 | 169 | 0.379 |
| 17 | 17 | 0.528 |
| 18 | 18 | 0.0866 |
| 19 | 19 | 0.86 |
| 2 | 2 | 0.441 |
| 20 | 20 | 0.00777 |
| 21 | 21 | 0.347 |
| 22 | 22 | 0.961 |
| 23 | 23 | 0.302 |
| 24 | 24 | 0.809 |
| 25 | 25 | 0.633 |
| 26 | 26 | 0.0853 |
| 27 | 27 | 0.23 |
| 28 | 28 | 0.868 |
| 29 | 29 | 0.00781 |
| 3 | 3 | 0.0607 |
| 30 | 30 | 0.38 |
| 31 | 31 | 0.479 |
| 32 | 32 | 0.0887 |
| 33 | 33 | 0.348 |
| 34 | 34 | 0.203 |
| 35 | 35 | 0.439 |
| 36 | 36 | 0.0565 |
| 37 | 37 | 0.34 |
| 38 | 38 | 0.68 |
| 39 | 39 | 0.703 |
| 4 | 4 | 0.791 |
| 40 | 40 | 0.0349 |
| 41 | 41 | 0.0604 |
| 42 | 42 | 0.607 |
| 43 | 43 | 0.611 |
| 44 | 44 | 0.191 |
| 45 | 45 | 0.535 |
| 46 | 46 | 0.904 |
| 47 | 47 | 0.752 |
| 48 | 48 | 0.755 |
| 49 | 49 | 0.58 |
| 5 | 5 | 0.749 |
| 50 | 50 | 0.91 |
| 51 | 51 | 0.721 |
| 52 | 52 | 0.245 |
| 53 | 53 | 0.846 |
| 54 | 54 | 0.287 |
| 55 | 55 | 0.535 |
| 56 | 56 | 0.556 |
| 57 | 57 | 0.216 |
| 58 | 58 | 0.264 |
| 59 | 59 | 0.75 |
| 6 | 6 | 0.164 |
| 60 | 60 | 0.756 |
| 61 | 61 | 0.141 |
| 62 | 62 | 0.945 |
| 63 | 63 | 0.971 |
| 64 | 64 | 0.945 |
| 65 | 65 | 0.878 |
| 66 | 66 | 0.974 |
| 67 | 67 | 0.491 |
| 68 | 68 | 0.773 |
| 69 | 69 | 0.13 |
| 7 | 7 | 0.696 |
| 70 | 70 | 0.268 |
| 71 | 71 | 0.00489 |
| 72 | 72 | 0.999 |
| 73 | 73 | 0.541 |
| 74 | 74 | 0.272 |
| 75 | 75 | 0.0694 |
| 76 | 76 | 0.0159 |
| 77 | 77 | 0.468 |
| 78 | 78 | 0.0788 |
| 79 | 79 | 0.759 |
| 8 | 8 | 0.499 |
| 80 | 80 | 0.00321 |
| 81 | 81 | 0.821 |
| 82 | 82 | 0.871 |
| 83 | 83 | 0.996 |
| 84 | 84 | 0.725 |
| 85 | 85 | 0.794 |
| 86 | 86 | 0.776 |
| 87 | 87 | 0.258 |
| 88 | 88 | 0.636 |
| 89 | 89 | 0.366 |
| 9 | 9 | 0.0325 |
| 90 | 90 | 0.349 |
| 91 | 91 | 0.973 |
| 92 | 92 | 0.805 |
| 93 | 93 | 0.989 |
| 94 | 94 | 0.982 |
| 95 | 95 | 0.173 |
| 96 | 96 | 0.558 |
| 97 | 97 | 0.723 |
| 98 | 98 | 0.85 |
| 99 | 99 | 0.587 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11257
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103732 TUHR-10TKB cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100067 (kidney cell line sample)
0101120 (epithelial cell line sample)
0103192 (renal cancer cell line sample)
0100383 (renal cell carcinoma cell line sample)
0103732 (TUHR-10TKB cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
