FF:10759-110E3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005880 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007929;DRR008801;DRZ000226;DRZ001611;DRZ011576;DRZ012961 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100711,FF:0100255,FF:0100690,FF:0101531,FF:0101359 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100255 | |fonse_cell_line=FF:0100255 | ||
|fonse_cell_line_closure=FF:0100255 | |fonse_cell_line_closure=FF:0100255 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aONS-76.CNhs11861.10759-110E3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10759-110E3 | |id=FF:10759-110E3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101359 | ||
|is_obsolete= | |||
|library_id=CNhs11861 | |||
|library_id_phase_based=2:CNhs11861 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10759 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10759 | |||
|name=medulloblastoma cell line:ONS-76 | |name=medulloblastoma cell line:ONS-76 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11861,LSID830,release010,COMPLETED | |profile_hcage=CNhs11861,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0505091537810521,0,-0.136549164903393,-0.0264854439584494,0,0,0,0,0,0,0,0,0,0,0,0.0511449590802371,0,0.022745558210654,0,0,0,0,0,0.0403262370346399,0,0,0.0053275435238351,0,0,0,0,0,0,0,0,0,0,0.243008874972915,0,-0.0441405955176489,0,0,0,0,0,0,0,0,0.129646770247064,0,0,0,0.628336873621733,0,0.0509710958084737,0,0.0790762073164765,0,0,0.0409405060896004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0271679935356421,0,0,0,0,0,0.0250989097971663,0.000884222669439105,0.0255724795401185,0,0,-0.0584468268118252,0.0757932708392515,0,0.138284133302697,0,0.138284133302697,-0.0980353512377064,0.0375932584764743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0708011143823425,0,0,0,-0.0485707522809905,-0.345249244563489,0,0,0.0332994595970441,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.138284133302697,0.0968963988523578,0,0,0,0.0511449590802371,0,0.138284133302697,0,0,-0.0363516914181262,0.0255724795401185,0.581803096577822,0.254384022401084,0,0,0.0357839366047441,0,0,0,0,0,0,0,0,0,0.788274258639878,0,-0.0504125515893149,0,0,0,0,0.0069471984562679,-0.305472230898407,0,-0.105115994498161,-0.0683442610773682,0,0,0,0,0.122717505391375,0,-0.120879483793741,0.160288706649497,0,0.267020349799103,0.0500917399599778,0,0,0,0.359714337289835,-0.240284391473722,0,0,-0.0337455674723331,-0.034272701534083,0,0,-0.0388998815932451,0,-0.0641575536738952,-0.0604397418968705,0,0.227781976775034,0,0,0,0,0,0,0,0,0,0.0255724795401185,0,-0.0574934668214365,-0.0839797217060542,0,0.0511449590802371,0.243008874972915,0.0322656389247236,-0.1177491017762,0.0446086327322979,0,0.45595962769327,0.031363982989641,0.0255724795401185,0.351627311500489,0,-0.251244767929676,0.00148006328396788,0.0037505117620025,-0.157969112879113,-0.147401849371139,-0.189981719549847,0,-0.000681952862626289,-0.121214247252397,0.106552806152216,-0.0592736033054866,0.0038972218570017,-0.105177702548255,-0.205283760182149,0,0,0,-0.066228242085031,0,0.300995959474502,-0.217145209440227,0.24211964518487,0.211736877918826,0.142841556860272,0.0623616531081305,0.147798383672753,0.280921491492065,-0.105291752938205,0.0527489856354407,0.279638432532783,0,0,0.0667390618605128,0.0147721704676028,0.130482018485121,0.319872748825927,0.0153038547122332,-0.00690158927008444,-0.0171993019971311,0.169952636912636,-0.0357883977188904,0.138041471567932,0,0.0968963988523578,0.17128932387578,0,0.0511449590802371,0.0968963988523578,0.0347362750640211,0.0968963988523578,0.428374114296786,-0.10020276844948,0.068140397918957,0,-0.144055347014674,0,-0.00317548006696733,0,-0.0568955403859708,0.00865642225663271,0,0.0626910678934283,0.0266489174752624,0.0800186910577304,-0.137403152698696,-0.0896653351685703,0.151586541678503,-0.0584468268118252,0.0291396757723562,-0.0552210843112859,0.0976414221062396,0.16524213402351,0.0505358166251908,-0.0881268324752877,0,0.299661482382215,0.157716398322307,0.109259293061586,0.0446190583324087,0.000468934473646383,0.0113190795843037,0,-0.295989686037142,0,0.156401320133092,0.189889308000704,0,0.0219787284347948,0,0.0783351914949881,0.277199805078874,0.0511449590802371,0.0797603267864092,0,0.0968963988523578,0.791580675186465,0.115159788862309,-0.123616143585048,0.0743951245571124,0,0.0701991634307425,0,0,-0.105446221036224,-0.0594074692053071,0,-0.0940904719050779,-0.21130374928884,-0.109412309385916,0.156998431601612,0.0511449590802371,0,0.75217431883944,0.0842808382330156,0,0.223317719831807,0,-0.124979592149255,-0.077257772927674,0.0255724795401185,0.748471081127672,0,0,-0.00145919740609401,0,0.148147398961284,0,0,0.17359412945457,0.0594404555689489,0,0,0,0.0142778930945763,0,0,0,0,0,0,0.00542168004530575,-0.0554111916435258,-0.0275104342314619,0,0.372456443947661,0,0,0,0,0,0,0,0,0.484515041031993,0.00786885714065815,-0.0718724565961832,0.198949582462278,0,0,0,-0.039654833994393,-0.0271679935356421,0,-0.131862706497632,0.0511449590802371,0.219644687290343,0,0,-0.0349960307089743,0,0,0.0255724795401185,0,-0.057730457053664,-0.119816053803256,0,0,0,0.0240415578727114,0,0,0,0,-0.0906658783086576,0,0,-0.154854300845484,0,0.00578931222785806,-0.0304369204666044,0,0.0862715283162261,0.104361243224313,0.900161993322101,0,0.210827183867438,0.090797568168502,0,0,-0.132913899723526,0,0.0511449590802371,0.0406741118687407,0,0,0,0,0.0511449590802371,0,-0.0760303790970583,0,0,0,0,0,0.0511449590802371,0,0,0,0,0,0.0421075667116357,0.118603127208928,0,0,0,0,0,0,0,0.114178110223794,0.0733010078752333,0,0,0,0,0,0,0,0,0.143946442197567,0,0,0,0,0,0.0790762073164765,0,0,0,0,-0.0529708879168989,0,0,0.049960763791472,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0721741269552107,-0.281640117203144,0,0,0,0,0,0,0,-0.136549164903393,0,0,0,0,0.129124501263937,0,0,0,0.27082781860322,0,0.0505091537810521,0,0,0,0,0,0,0.0484481994261789,0,0,0,0,0,0,0,0,0,0,0.121504437486458,0,0,0,0.254730647453513,0,0.113791412310585,0.0703584747047561,0,0,0.0543623209020785,0,0,0,0,0,0,0.0171077753976519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00928556426496985,0,0,0,0,0,0,0,0.0403262370346399,0,0,-0.0435846103743472,0,0,0,0,0.0651725458391966,0,0.0701248298142161,0.0918098522931702,0.0553152528099141,0,0,0,0.0147564941688937,0.628336873621733,0,0.0507972325367103,0,-0.0156324283386643,0,0,0,0,0,0,0,0,0.243008874972915,0,0,0,0,0,0,0,0,0.0511449590802371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.022745558210654,0,0,0,0,0,0,0,0,0,0,0,0,0.0255724795401185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0255724795401185,0,0,0,0,0,0,0.102471120430303,0.0968963988523578,0,0,0,0,0,0,0,0,0,0,0,0.0255724795401185,0,0,0,0,0,0,0,0,0.0968963988523578,-0.0288735091884013,0,0,0,-0.00225904578960548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0511449590802371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138284133302697,0,0,0,-0.0781059709654086,0,0,0,0,0,0,0,0,0.243008874972915,0,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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.10E+05 | ||
|rna_weight_ug=95.75325 | |rna_weight_ug=95.75325 | ||
|sample_age=2 | |sample_age=2 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=ifo50355 | |sample_cell_catalog=ifo50355 | ||
|sample_cell_line=ONS-76 | |sample_cell_line=ONS-76 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.22279926247374e-272!GO:0043226;organelle;1.02975983333948e-233!GO:0043229;intracellular organelle;2.61939301338804e-233!GO:0043231;intracellular membrane-bound organelle;9.62057166101748e-231!GO:0043227;membrane-bound organelle;1.95824773459502e-230!GO:0005737;cytoplasm;7.57174066856231e-170!GO:0044422;organelle part;2.32583760131574e-168!GO:0044446;intracellular organelle part;6.26741173937246e-167!GO:0044444;cytoplasmic part;1.14533003993271e-119!GO:0005634;nucleus;2.83677673749575e-114!GO:0032991;macromolecular complex;4.72925056822837e-113!GO:0044238;primary metabolic process;1.49472580830177e-105!GO:0044237;cellular metabolic process;1.08500906382848e-104!GO:0043170;macromolecule metabolic process;3.63855092489906e-103!GO:0030529;ribonucleoprotein complex;7.66801472226199e-93!GO:0044428;nuclear part;8.71476749032123e-89!GO:0043233;organelle lumen;6.43673522157141e-84!GO:0031974;membrane-enclosed lumen;6.43673522157141e-84!GO:0005515;protein binding;1.48600782867874e-80!GO:0003723;RNA binding;1.07184972608316e-78!GO:0043283;biopolymer metabolic process;2.61697418433513e-69!GO:0005739;mitochondrion;3.44431066753498e-64!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.40353009535394e-64!GO:0010467;gene expression;2.43258216122977e-60!GO:0016043;cellular component organization and biogenesis;3.13281749068641e-59!GO:0043234;protein complex;6.63737525513329e-58!GO:0006396;RNA processing;1.98737056185397e-57!GO:0031981;nuclear lumen;3.06360809548089e-54!GO:0005840;ribosome;1.61781281750686e-53!GO:0031090;organelle membrane;2.82022259085592e-52!GO:0006412;translation;5.86614478322037e-50!GO:0019538;protein metabolic process;7.18600950513899e-48!GO:0003735;structural constituent of ribosome;4.75700374927404e-46!GO:0044429;mitochondrial part;3.51141990163588e-45!GO:0043228;non-membrane-bound organelle;6.78551413787213e-45!GO:0043232;intracellular non-membrane-bound organelle;6.78551413787213e-45!GO:0006259;DNA metabolic process;5.16051998715595e-44!GO:0031967;organelle envelope;6.50190963021698e-44!GO:0031975;envelope;1.72044102924529e-43!GO:0016071;mRNA metabolic process;1.95701869040752e-42!GO:0044260;cellular macromolecule metabolic process;4.73789433300188e-42!GO:0044267;cellular protein metabolic process;7.52879582105526e-42!GO:0003676;nucleic acid binding;5.53786796165586e-41!GO:0006996;organelle organization and biogenesis;9.31691990728251e-41!GO:0008380;RNA splicing;1.89860303658251e-40!GO:0009058;biosynthetic process;1.92150220559166e-39!GO:0033279;ribosomal subunit;5.71416536137997e-39!GO:0044249;cellular biosynthetic process;6.32373389827789e-39!GO:0009059;macromolecule biosynthetic process;1.42398339889611e-38!GO:0015031;protein transport;3.84108617653113e-38!GO:0033036;macromolecule localization;5.59422162360023e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.91013076390122e-37!GO:0006397;mRNA processing;1.04325844029337e-36!GO:0046907;intracellular transport;3.94386274269238e-36!GO:0065003;macromolecular complex assembly;1.18224067218406e-35!GO:0008104;protein localization;4.08405112531591e-34!GO:0045184;establishment of protein localization;5.91733201443715e-34!GO:0005829;cytosol;2.43413379709991e-33!GO:0005654;nucleoplasm;4.83653674160299e-33!GO:0016070;RNA metabolic process;1.617967873742e-32!GO:0007049;cell cycle;1.41461005900013e-31!GO:0022607;cellular component assembly;2.13121507638099e-31!GO:0005740;mitochondrial envelope;6.44644640269799e-29!GO:0005681;spliceosome;1.6157218927415e-28!GO:0006886;intracellular protein transport;2.02212365142504e-28!GO:0019866;organelle inner membrane;1.51001485610751e-27!GO:0044451;nucleoplasm part;3.51803685043473e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.1066579107e-27!GO:0031966;mitochondrial membrane;5.81843893103379e-27!GO:0000166;nucleotide binding;5.56875201125136e-26!GO:0000278;mitotic cell cycle;1.92980177325319e-25!GO:0005743;mitochondrial inner membrane;3.66825757470391e-25!GO:0022402;cell cycle process;1.62174793560982e-24!GO:0005694;chromosome;1.33654998574429e-23!GO:0012505;endomembrane system;1.39437133829346e-23!GO:0051649;establishment of cellular localization;2.62977401739345e-23!GO:0006974;response to DNA damage stimulus;2.79370949559727e-23!GO:0051641;cellular localization;4.80630173837888e-23!GO:0005730;nucleolus;1.78356489462697e-22!GO:0006119;oxidative phosphorylation;4.40881770610546e-22!GO:0016462;pyrophosphatase activity;4.88402018757054e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.12224580052037e-22!GO:0044455;mitochondrial membrane part;9.61403769292547e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;9.61403769292547e-22!GO:0017111;nucleoside-triphosphatase activity;1.02553684065126e-21!GO:0006260;DNA replication;1.81762417447035e-21!GO:0044445;cytosolic part;4.50115403996552e-21!GO:0044427;chromosomal part;8.86436970946047e-21!GO:0000087;M phase of mitotic cell cycle;1.68452459088483e-20!GO:0022618;protein-RNA complex assembly;1.83165167206412e-20!GO:0015935;small ribosomal subunit;2.15527568439813e-20!GO:0006281;DNA repair;2.20295012318501e-20!GO:0007067;mitosis;4.46313263251289e-20!GO:0015934;large ribosomal subunit;9.72269864076388e-20!GO:0031980;mitochondrial lumen;1.00001013726693e-19!GO:0005759;mitochondrial matrix;1.00001013726693e-19!GO:0051276;chromosome organization and biogenesis;1.96135133895287e-19!GO:0006457;protein folding;2.37637431645979e-19!GO:0016874;ligase activity;1.28295934496955e-18!GO:0022403;cell cycle phase;2.39235235681534e-18!GO:0008134;transcription factor binding;2.54599373840277e-18!GO:0051301;cell division;3.34235607538455e-18!GO:0032553;ribonucleotide binding;9.72959498836107e-18!GO:0032555;purine ribonucleotide binding;9.72959498836107e-18!GO:0017076;purine nucleotide binding;1.63754177062952e-17!GO:0044265;cellular macromolecule catabolic process;2.83897063544481e-17!GO:0005746;mitochondrial respiratory chain;3.83683727709646e-17!GO:0042254;ribosome biogenesis and assembly;3.84779164358389e-17!GO:0043285;biopolymer catabolic process;5.69746799059273e-17!GO:0006512;ubiquitin cycle;1.03234257024734e-16!GO:0005524;ATP binding;1.92063885386842e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.07440016096609e-16!GO:0005761;mitochondrial ribosome;2.50843950865851e-16!GO:0000313;organellar ribosome;2.50843950865851e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.62285732873342e-16!GO:0032559;adenyl ribonucleotide binding;3.82669908445879e-16!GO:0000279;M phase;5.12569194447342e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;5.26392158615088e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.53213431100714e-16!GO:0003954;NADH dehydrogenase activity;6.53213431100714e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.53213431100714e-16!GO:0009719;response to endogenous stimulus;7.94710055822821e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;8.31424035787369e-16!GO:0000375;RNA splicing, via transesterification reactions;8.31424035787369e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.31424035787369e-16!GO:0005635;nuclear envelope;8.3837360840089e-16!GO:0048770;pigment granule;9.01251668361574e-16!GO:0042470;melanosome;9.01251668361574e-16!GO:0030554;adenyl nucleotide binding;9.34759619867852e-16!GO:0019941;modification-dependent protein catabolic process;1.00204919092044e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.00204919092044e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.04387401973679e-15!GO:0044257;cellular protein catabolic process;1.08343643774167e-15!GO:0005783;endoplasmic reticulum;1.14998879720765e-15!GO:0006605;protein targeting;1.31459272901235e-15!GO:0009057;macromolecule catabolic process;1.84143957659073e-15!GO:0008135;translation factor activity, nucleic acid binding;2.16408234589642e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;2.17567216941445e-15!GO:0043412;biopolymer modification;3.54338729380675e-15!GO:0006323;DNA packaging;1.17007596209746e-14!GO:0044453;nuclear membrane part;1.24789796527912e-14!GO:0031965;nuclear membrane;1.79806707983115e-14!GO:0005794;Golgi apparatus;1.88613920232004e-14!GO:0030163;protein catabolic process;2.16077171453186e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.28040152817082e-14!GO:0042773;ATP synthesis coupled electron transport;5.28040152817082e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.05021297698561e-14!GO:0030964;NADH dehydrogenase complex (quinone);8.17273744455609e-14!GO:0045271;respiratory chain complex I;8.17273744455609e-14!GO:0005747;mitochondrial respiratory chain complex I;8.17273744455609e-14!GO:0016887;ATPase activity;8.17273744455609e-14!GO:0050794;regulation of cellular process;9.58199708970226e-14!GO:0006913;nucleocytoplasmic transport;1.14836331932095e-13!GO:0044432;endoplasmic reticulum part;1.34465257979485e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.76111438757152e-13!GO:0051082;unfolded protein binding;3.23557074469153e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.43683339056237e-13!GO:0051169;nuclear transport;4.93141626791288e-13!GO:0006464;protein modification process;6.02721518478335e-13!GO:0006366;transcription from RNA polymerase II promoter;7.0374474665776e-13!GO:0051186;cofactor metabolic process;7.04102170738723e-13!GO:0003712;transcription cofactor activity;8.64130504318175e-13!GO:0005643;nuclear pore;9.04091906411937e-13!GO:0016604;nuclear body;9.91090373585607e-13!GO:0042623;ATPase activity, coupled;1.17346173128156e-12!GO:0003743;translation initiation factor activity;1.37141485221538e-12!GO:0006399;tRNA metabolic process;4.03290086754431e-12!GO:0048193;Golgi vesicle transport;4.07899193126842e-12!GO:0044248;cellular catabolic process;4.29061688937496e-12!GO:0051726;regulation of cell cycle;4.80010955140426e-12!GO:0006413;translational initiation;5.63878738077667e-12!GO:0015630;microtubule cytoskeleton;5.75936139850116e-12!GO:0000074;regulation of progression through cell cycle;1.07476153873719e-11!GO:0000785;chromatin;1.07611572575363e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.29905271760723e-11!GO:0006364;rRNA processing;1.31703091866157e-11!GO:0004386;helicase activity;1.54333239890587e-11!GO:0016072;rRNA metabolic process;3.46173709371262e-11!GO:0006446;regulation of translational initiation;4.7139860168136e-11!GO:0009055;electron carrier activity;4.90440353924899e-11!GO:0043687;post-translational protein modification;5.19767301398957e-11!GO:0050657;nucleic acid transport;8.95811081412002e-11!GO:0051236;establishment of RNA localization;8.95811081412002e-11!GO:0050658;RNA transport;8.95811081412002e-11!GO:0006403;RNA localization;9.17493020189321e-11!GO:0019222;regulation of metabolic process;2.80367427034474e-10!GO:0008026;ATP-dependent helicase activity;2.96385032252924e-10!GO:0046930;pore complex;3.04502051681741e-10!GO:0065002;intracellular protein transport across a membrane;3.2381350054188e-10!GO:0017038;protein import;3.32336182719573e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.91161386041216e-10!GO:0016192;vesicle-mediated transport;3.98221963133741e-10!GO:0006461;protein complex assembly;3.98221963133741e-10!GO:0006732;coenzyme metabolic process;4.65123266621813e-10!GO:0065004;protein-DNA complex assembly;5.26777230570359e-10!GO:0006261;DNA-dependent DNA replication;5.94519056905917e-10!GO:0005789;endoplasmic reticulum membrane;8.57715412783905e-10!GO:0050789;regulation of biological process;8.6915194511309e-10!GO:0043566;structure-specific DNA binding;1.03411813239763e-09!GO:0006333;chromatin assembly or disassembly;1.07845334204815e-09!GO:0009259;ribonucleotide metabolic process;1.28611847476072e-09!GO:0016607;nuclear speck;1.47522530751079e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.66258041757822e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.86214624142544e-09!GO:0008639;small protein conjugating enzyme activity;2.98095421369347e-09!GO:0006163;purine nucleotide metabolic process;3.09042319717445e-09!GO:0044431;Golgi apparatus part;3.41408389802784e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.80588799770581e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.92627900895138e-09!GO:0012501;programmed cell death;5.19214821407639e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.57185791747599e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.57185791747599e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.57185791747599e-09!GO:0008565;protein transporter activity;5.96112071676107e-09!GO:0016568;chromatin modification;6.303128028062e-09!GO:0004842;ubiquitin-protein ligase activity;6.35528021002624e-09!GO:0006164;purine nucleotide biosynthetic process;7.57814938775859e-09!GO:0051028;mRNA transport;7.58778746862339e-09!GO:0019787;small conjugating protein ligase activity;7.6302548736717e-09!GO:0003697;single-stranded DNA binding;7.68540015045253e-09!GO:0005793;ER-Golgi intermediate compartment;8.76579776452888e-09!GO:0006915;apoptosis;9.30190136802889e-09!GO:0009260;ribonucleotide biosynthetic process;9.53013128456536e-09!GO:0016779;nucleotidyltransferase activity;1.2361934891626e-08!GO:0000775;chromosome, pericentric region;1.3640205696179e-08!GO:0005819;spindle;1.43984665901192e-08!GO:0043038;amino acid activation;1.60238246153049e-08!GO:0006418;tRNA aminoacylation for protein translation;1.60238246153049e-08!GO:0043039;tRNA aminoacylation;1.60238246153049e-08!GO:0009150;purine ribonucleotide metabolic process;1.65039790546994e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.46858105131427e-08!GO:0048523;negative regulation of cellular process;2.46936709216624e-08!GO:0007005;mitochondrion organization and biogenesis;2.94467532219572e-08!GO:0005667;transcription factor complex;3.64392785280555e-08!GO:0005813;centrosome;3.81727109366776e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.14095742958168e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.73698631185169e-08!GO:0000245;spliceosome assembly;5.2590485003068e-08!GO:0031323;regulation of cellular metabolic process;6.31680247243663e-08!GO:0016881;acid-amino acid ligase activity;6.66722569110977e-08!GO:0005815;microtubule organizing center;9.22465850592145e-08!GO:0051188;cofactor biosynthetic process;9.97254668583471e-08!GO:0016740;transferase activity;1.00604409807399e-07!GO:0006350;transcription;1.24865350135035e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.2809953833009e-07!GO:0015986;ATP synthesis coupled proton transport;1.46388088222802e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.46388088222802e-07!GO:0051170;nuclear import;1.55744429813411e-07!GO:0032446;protein modification by small protein conjugation;1.56224912063214e-07!GO:0009141;nucleoside triphosphate metabolic process;1.6126183507194e-07!GO:0000139;Golgi membrane;2.08402165696798e-07!GO:0009060;aerobic respiration;2.08686455359349e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.24514756391619e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.24514756391619e-07!GO:0016567;protein ubiquitination;2.28931600387157e-07!GO:0008219;cell death;2.49791479898964e-07!GO:0016265;death;2.49791479898964e-07!GO:0043623;cellular protein complex assembly;2.50889043049421e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.57933292923883e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.57933292923883e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.62219692153717e-07!GO:0030120;vesicle coat;2.86503334987155e-07!GO:0030662;coated vesicle membrane;2.86503334987155e-07!GO:0007051;spindle organization and biogenesis;3.26788683391108e-07!GO:0006606;protein import into nucleus;3.42709065089721e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.5753440456755e-07!GO:0019829;cation-transporting ATPase activity;3.62872182413164e-07!GO:0048475;coated membrane;4.32067687726339e-07!GO:0030117;membrane coat;4.32067687726339e-07!GO:0009056;catabolic process;4.32853324245395e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.68747807041379e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.68747807041379e-07!GO:0048519;negative regulation of biological process;5.32431111802456e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.54105567694203e-07!GO:0016564;transcription repressor activity;5.7236712027253e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.11899777961443e-07!GO:0031324;negative regulation of cellular metabolic process;6.37373680640289e-07!GO:0003899;DNA-directed RNA polymerase activity;7.01569994951313e-07!GO:0045259;proton-transporting ATP synthase complex;7.01788966284884e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.24981559261219e-07!GO:0045333;cellular respiration;8.70669067983643e-07!GO:0009117;nucleotide metabolic process;1.19768368255626e-06!GO:0046034;ATP metabolic process;1.25332313916864e-06!GO:0003714;transcription corepressor activity;1.47900340170368e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.60810079424774e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.77332072219241e-06!GO:0006754;ATP biosynthetic process;1.86719465526546e-06!GO:0006753;nucleoside phosphate metabolic process;1.86719465526546e-06!GO:0051246;regulation of protein metabolic process;1.87938398825864e-06!GO:0016563;transcription activator activity;2.05873821053953e-06!GO:0006099;tricarboxylic acid cycle;2.05873821053953e-06!GO:0046356;acetyl-CoA catabolic process;2.05873821053953e-06!GO:0010468;regulation of gene expression;2.22749808733895e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.22749808733895e-06!GO:0005657;replication fork;2.35734977762274e-06!GO:0006793;phosphorus metabolic process;2.90030632239491e-06!GO:0006796;phosphate metabolic process;2.90030632239491e-06!GO:0031497;chromatin assembly;3.03273198624158e-06!GO:0006334;nucleosome assembly;3.46710298972131e-06!GO:0003682;chromatin binding;3.67448497928289e-06!GO:0009108;coenzyme biosynthetic process;4.14730560919537e-06!GO:0051427;hormone receptor binding;4.61931113706388e-06!GO:0005762;mitochondrial large ribosomal subunit;4.74626205968315e-06!GO:0000315;organellar large ribosomal subunit;4.74626205968315e-06!GO:0003713;transcription coactivator activity;4.89111722656459e-06!GO:0003924;GTPase activity;4.89111722656459e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.27491033921269e-06!GO:0051329;interphase of mitotic cell cycle;5.34667780960093e-06!GO:0000075;cell cycle checkpoint;5.44443967195716e-06!GO:0051168;nuclear export;5.56683758201105e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.00500212143162e-06!GO:0003724;RNA helicase activity;6.78534896233358e-06!GO:0032774;RNA biosynthetic process;8.0234224386215e-06!GO:0006084;acetyl-CoA metabolic process;8.82308805321905e-06!GO:0016481;negative regulation of transcription;8.9017974923488e-06!GO:0065007;biological regulation;8.95306833885024e-06!GO:0006351;transcription, DNA-dependent;1.03979731477074e-05!GO:0035257;nuclear hormone receptor binding;1.09356806879053e-05!GO:0009892;negative regulation of metabolic process;1.1764875814072e-05!GO:0008654;phospholipid biosynthetic process;1.41513672656544e-05!GO:0005788;endoplasmic reticulum lumen;1.47562654891212e-05!GO:0016787;hydrolase activity;1.84403478568506e-05!GO:0006613;cotranslational protein targeting to membrane;1.99107320916672e-05!GO:0000151;ubiquitin ligase complex;1.9936926750246e-05!GO:0008094;DNA-dependent ATPase activity;2.22610819973559e-05!GO:0051325;interphase;2.23609421008454e-05!GO:0000314;organellar small ribosomal subunit;2.25965539800725e-05!GO:0005763;mitochondrial small ribosomal subunit;2.25965539800725e-05!GO:0004298;threonine endopeptidase activity;2.35380463711794e-05!GO:0005798;Golgi-associated vesicle;2.64054348828681e-05!GO:0006302;double-strand break repair;2.70322699018784e-05!GO:0009109;coenzyme catabolic process;3.00177120788666e-05!GO:0006752;group transfer coenzyme metabolic process;3.39026375112046e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.49401977454607e-05!GO:0043069;negative regulation of programmed cell death;4.15484719035162e-05!GO:0016310;phosphorylation;4.23876399166769e-05!GO:0005768;endosome;4.36346538722596e-05!GO:0044452;nucleolar part;4.71883669851635e-05!GO:0006916;anti-apoptosis;4.75520416574196e-05!GO:0003690;double-stranded DNA binding;4.94296729763082e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.95041567784802e-05!GO:0043067;regulation of programmed cell death;4.96155383781796e-05!GO:0006383;transcription from RNA polymerase III promoter;5.18180290440448e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.23032720803527e-05!GO:0045454;cell redox homeostasis;5.25360591686834e-05!GO:0045786;negative regulation of progression through cell cycle;5.78179761216907e-05!GO:0043021;ribonucleoprotein binding;5.80773451794059e-05!GO:0042981;regulation of apoptosis;6.05173735647708e-05!GO:0031988;membrane-bound vesicle;6.2012291922764e-05!GO:0051052;regulation of DNA metabolic process;7.15165320946906e-05!GO:0008033;tRNA processing;7.49939603424257e-05!GO:0030867;rough endoplasmic reticulum membrane;7.75028615462291e-05!GO:0045449;regulation of transcription;7.9076605016484e-05!GO:0005874;microtubule;8.61620376080703e-05!GO:0048471;perinuclear region of cytoplasm;9.51376402544673e-05!GO:0051187;cofactor catabolic process;0.000103649843877978!GO:0043066;negative regulation of apoptosis;0.000104509345354599!GO:0030880;RNA polymerase complex;0.000134776764118763!GO:0008186;RNA-dependent ATPase activity;0.000158009918328716!GO:0015631;tubulin binding;0.000173568352760363!GO:0007010;cytoskeleton organization and biogenesis;0.000180878291718099!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000183467484857841!GO:0005770;late endosome;0.000184999512694221!GO:0003677;DNA binding;0.000193181110845244!GO:0003684;damaged DNA binding;0.000198729113834669!GO:0006352;transcription initiation;0.000208426129964098!GO:0007088;regulation of mitosis;0.000211157966388205!GO:0005048;signal sequence binding;0.000222953919151731!GO:0016853;isomerase activity;0.000225700212950503!GO:0031982;vesicle;0.000236824875243191!GO:0031410;cytoplasmic vesicle;0.000256333577766048!GO:0044440;endosomal part;0.000258824453395614!GO:0010008;endosome membrane;0.000258824453395614!GO:0007017;microtubule-based process;0.000261879647275544!GO:0007059;chromosome segregation;0.000272495426424807!GO:0016363;nuclear matrix;0.000283663500436328!GO:0033116;ER-Golgi intermediate compartment membrane;0.000301475826592908!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0003239283538357!GO:0000428;DNA-directed RNA polymerase complex;0.0003239283538357!GO:0003729;mRNA binding;0.000325165357141944!GO:0000776;kinetochore;0.000363010017341074!GO:0031252;leading edge;0.000414709525826875!GO:0008250;oligosaccharyl transferase complex;0.000416338320877389!GO:0004004;ATP-dependent RNA helicase activity;0.000416777666701209!GO:0019867;outer membrane;0.000424094493507864!GO:0006402;mRNA catabolic process;0.000428157543390073!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000451741193843359!GO:0000059;protein import into nucleus, docking;0.000461248799277119!GO:0004576;oligosaccharyl transferase activity;0.000470602516139127!GO:0006839;mitochondrial transport;0.00049136886627631!GO:0009165;nucleotide biosynthetic process;0.000505381947585383!GO:0031968;organelle outer membrane;0.000506054002428773!GO:0006310;DNA recombination;0.000507205922915895!GO:0019899;enzyme binding;0.000512033765563365!GO:0008361;regulation of cell size;0.00051682984621459!GO:0031072;heat shock protein binding;0.000527865912140046!GO:0006626;protein targeting to mitochondrion;0.000546241535253158!GO:0051252;regulation of RNA metabolic process;0.000596622485502598!GO:0007052;mitotic spindle organization and biogenesis;0.000606682104344646!GO:0046474;glycerophospholipid biosynthetic process;0.000607346506565792!GO:0006401;RNA catabolic process;0.000609322803911896!GO:0006355;regulation of transcription, DNA-dependent;0.000612223639805516!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000619938598461332!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000676532968497184!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000726442455799053!GO:0030133;transport vesicle;0.000728056102278896!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000751077455985046!GO:0005885;Arp2/3 protein complex;0.000754036348027373!GO:0016049;cell growth;0.00077252124190106!GO:0016859;cis-trans isomerase activity;0.000817096914971283!GO:0005741;mitochondrial outer membrane;0.000822172642508237!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000830758212960965!GO:0015980;energy derivation by oxidation of organic compounds;0.000830758212960965!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00085801037816031!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000860074246038779!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000860074246038779!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000860074246038779!GO:0046467;membrane lipid biosynthetic process;0.00087850001030257!GO:0051920;peroxiredoxin activity;0.000878646689239931!GO:0006612;protein targeting to membrane;0.000885762718824619!GO:0005773;vacuole;0.000907430773712151!GO:0006405;RNA export from nucleus;0.000915349026452004!GO:0016741;transferase activity, transferring one-carbon groups;0.00092624666243707!GO:0043681;protein import into mitochondrion;0.00094419389945593!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000953603279505113!GO:0045893;positive regulation of transcription, DNA-dependent;0.000971088150467798!GO:0008168;methyltransferase activity;0.00097702962601839!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000985725017343678!GO:0030118;clathrin coat;0.000992305806535552!GO:0030658;transport vesicle membrane;0.00101280997705003!GO:0046489;phosphoinositide biosynthetic process;0.00105473723988672!GO:0001558;regulation of cell growth;0.00108566899806428!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00109119232733654!GO:0003702;RNA polymerase II transcription factor activity;0.00109209918976473!GO:0006414;translational elongation;0.00112217833845493!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00113351572236544!GO:0007006;mitochondrial membrane organization and biogenesis;0.00121471245073613!GO:0048522;positive regulation of cellular process;0.00123104741618681!GO:0042802;identical protein binding;0.00123104741618681!GO:0035258;steroid hormone receptor binding;0.00125091640403686!GO:0004527;exonuclease activity;0.00128692052892518!GO:0032508;DNA duplex unwinding;0.00133382746728025!GO:0032392;DNA geometric change;0.00133382746728025!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00135382507775374!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00137401351139547!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00137401351139547!GO:0045941;positive regulation of transcription;0.00137401351139547!GO:0005905;coated pit;0.00138173328552418!GO:0006270;DNA replication initiation;0.00138245816603429!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00146913723266253!GO:0005769;early endosome;0.00150700543632353!GO:0007093;mitotic cell cycle checkpoint;0.00159817682283419!GO:0008139;nuclear localization sequence binding;0.00161326301198686!GO:0043624;cellular protein complex disassembly;0.00165841144721843!GO:0005525;GTP binding;0.00175823691492604!GO:0005684;U2-dependent spliceosome;0.00176789651389662!GO:0006268;DNA unwinding during replication;0.0018404719311953!GO:0005637;nuclear inner membrane;0.0018723493873001!GO:0018196;peptidyl-asparagine modification;0.00187456339799441!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00187456339799441!GO:0016251;general RNA polymerase II transcription factor activity;0.00193494751498686!GO:0006275;regulation of DNA replication;0.00200354928135495!GO:0004674;protein serine/threonine kinase activity;0.00200354928135495!GO:0000323;lytic vacuole;0.00202294997830749!GO:0005764;lysosome;0.00202294997830749!GO:0016491;oxidoreductase activity;0.00210353595166669!GO:0006611;protein export from nucleus;0.00213087179610098!GO:0000786;nucleosome;0.00220323609134623!GO:0051789;response to protein stimulus;0.00243835234435124!GO:0006986;response to unfolded protein;0.00243835234435124!GO:0030660;Golgi-associated vesicle membrane;0.0024426932826432!GO:0006338;chromatin remodeling;0.00263206680692235!GO:0016272;prefoldin complex;0.00266097044026533!GO:0030132;clathrin coat of coated pit;0.00266360388838854!GO:0051087;chaperone binding;0.00268559887543488!GO:0045892;negative regulation of transcription, DNA-dependent;0.00277798548088687!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00281925625203173!GO:0015399;primary active transmembrane transporter activity;0.00281925625203173!GO:0043488;regulation of mRNA stability;0.00289866080059839!GO:0043487;regulation of RNA stability;0.00289866080059839!GO:0003678;DNA helicase activity;0.00292809155607016!GO:0000082;G1/S transition of mitotic cell cycle;0.00294292386747504!GO:0006091;generation of precursor metabolites and energy;0.00308630787408144!GO:0048500;signal recognition particle;0.00329530655301501!GO:0019843;rRNA binding;0.0033592492951796!GO:0005876;spindle microtubule;0.00381488670937813!GO:0051540;metal cluster binding;0.00382267823567291!GO:0051536;iron-sulfur cluster binding;0.00382267823567291!GO:0043596;nuclear replication fork;0.00382847953078819!GO:0030521;androgen receptor signaling pathway;0.00394037412511216!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00413737181551083!GO:0022415;viral reproductive process;0.00446081181378942!GO:0030119;AP-type membrane coat adaptor complex;0.0046221571178722!GO:0032984;macromolecular complex disassembly;0.00464732352202834!GO:0043284;biopolymer biosynthetic process;0.00508112768350077!GO:0042770;DNA damage response, signal transduction;0.00540458707725584!GO:0000049;tRNA binding;0.00554887386568848!GO:0006891;intra-Golgi vesicle-mediated transport;0.00558690367120787!GO:0043241;protein complex disassembly;0.00582371559477286!GO:0033673;negative regulation of kinase activity;0.00590758533468429!GO:0006469;negative regulation of protein kinase activity;0.00590758533468429!GO:0006284;base-excision repair;0.00607566929664208!GO:0030125;clathrin vesicle coat;0.00645459332611028!GO:0030665;clathrin coated vesicle membrane;0.00645459332611028!GO:0000725;recombinational repair;0.00652585886495542!GO:0000724;double-strand break repair via homologous recombination;0.00652585886495542!GO:0005791;rough endoplasmic reticulum;0.00653029259462408!GO:0009116;nucleoside metabolic process;0.00654862176809709!GO:0004518;nuclease activity;0.00661224576088337!GO:0032200;telomere organization and biogenesis;0.00685266799820348!GO:0000723;telomere maintenance;0.00685266799820348!GO:0051348;negative regulation of transferase activity;0.00685266799820348!GO:0040008;regulation of growth;0.00687336497590621!GO:0031124;mRNA 3'-end processing;0.0069973899449051!GO:0030663;COPI coated vesicle membrane;0.00734700695803975!GO:0030126;COPI vesicle coat;0.00734700695803975!GO:0043022;ribosome binding;0.00774149416948264!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00778189801735285!GO:0030131;clathrin adaptor complex;0.00778189801735285!GO:0032561;guanyl ribonucleotide binding;0.00778189801735285!GO:0019001;guanyl nucleotide binding;0.00778189801735285!GO:0006144;purine base metabolic process;0.0079979707307778!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00803833027274373!GO:0015002;heme-copper terminal oxidase activity;0.00803833027274373!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00803833027274373!GO:0004129;cytochrome-c oxidase activity;0.00803833027274373!GO:0043414;biopolymer methylation;0.00819008694356584!GO:0008312;7S RNA binding;0.00821026770081122!GO:0017166;vinculin binding;0.00841538689237938!GO:0006506;GPI anchor biosynthetic process;0.00841538689237938!GO:0005669;transcription factor TFIID complex;0.00857234893750759!GO:0051539;4 iron, 4 sulfur cluster binding;0.0085994576123679!GO:0006595;polyamine metabolic process;0.00863016769173983!GO:0003711;transcription elongation regulator activity;0.00868380591580139!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00873011187261538!GO:0008092;cytoskeletal protein binding;0.00879976028058767!GO:0032259;methylation;0.00896639682437832!GO:0009112;nucleobase metabolic process;0.00922674761161861!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00935446168823142!GO:0006818;hydrogen transport;0.00937298918528571!GO:0006650;glycerophospholipid metabolic process;0.00942987715766146!GO:0015992;proton transport;0.00959525889069275!GO:0005832;chaperonin-containing T-complex;0.00962485208899879!GO:0006497;protein amino acid lipidation;0.00978240697372744!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00978240697372744!GO:0045047;protein targeting to ER;0.00978240697372744!GO:0048487;beta-tubulin binding;0.00999153999468705!GO:0044262;cellular carbohydrate metabolic process;0.0100403740548197!GO:0046966;thyroid hormone receptor binding;0.010041620908023!GO:0016197;endosome transport;0.0101227379102433!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.010401080029068!GO:0031570;DNA integrity checkpoint;0.0105427195231546!GO:0000792;heterochromatin;0.0106943131540977!GO:0016584;nucleosome positioning;0.0107235193011684!GO:0030134;ER to Golgi transport vesicle;0.0108604901317766!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0109053921616301!GO:0006505;GPI anchor metabolic process;0.0109248233121357!GO:0030176;integral to endoplasmic reticulum membrane;0.0112774149380109!GO:0030137;COPI-coated vesicle;0.0114408735717297!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0115518205185549!GO:0030659;cytoplasmic vesicle membrane;0.011693164723452!GO:0042393;histone binding;0.0119074576104317!GO:0006376;mRNA splice site selection;0.0119647443101668!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0119647443101668!GO:0000922;spindle pole;0.0124289779768697!GO:0046483;heterocycle metabolic process;0.0124814400668706!GO:0009451;RNA modification;0.0127823912247523!GO:0008276;protein methyltransferase activity;0.013078553580282!GO:0043189;H4/H2A histone acetyltransferase complex;0.0132666247984164!GO:0007243;protein kinase cascade;0.013376629165763!GO:0022890;inorganic cation transmembrane transporter activity;0.0140650791208247!GO:0004532;exoribonuclease activity;0.0143035014936744!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0143035014936744!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0144582865710182!GO:0000781;chromosome, telomeric region;0.0145116869067169!GO:0043492;ATPase activity, coupled to movement of substances;0.0148998532808299!GO:0030384;phosphoinositide metabolic process;0.0149272234288089!GO:0030127;COPII vesicle coat;0.0149578795813823!GO:0012507;ER to Golgi transport vesicle membrane;0.0149578795813823!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0154293128852582!GO:0006950;response to stress;0.0158935457336391!GO:0016044;membrane organization and biogenesis;0.0158935457336391!GO:0007021;tubulin folding;0.0161435573979188!GO:0008022;protein C-terminus binding;0.0161435573979188!GO:0000178;exosome (RNase complex);0.0161435573979188!GO:0000339;RNA cap binding;0.0163415662955951!GO:0051101;regulation of DNA binding;0.016476022767776!GO:0051053;negative regulation of DNA metabolic process;0.016476022767776!GO:0044433;cytoplasmic vesicle part;0.0165256929955726!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.016878032030271!GO:0043601;nuclear replisome;0.0169921801843152!GO:0030894;replisome;0.0169921801843152!GO:0007040;lysosome organization and biogenesis;0.0170101899505166!GO:0006607;NLS-bearing substrate import into nucleus;0.017508388751639!GO:0040029;regulation of gene expression, epigenetic;0.0175643229153086!GO:0016791;phosphoric monoester hydrolase activity;0.0175798330363443!GO:0008017;microtubule binding;0.0176992845718784!GO:0006672;ceramide metabolic process;0.0180751680917156!GO:0006378;mRNA polyadenylation;0.0191148296027957!GO:0050681;androgen receptor binding;0.0192662356027953!GO:0006541;glutamine metabolic process;0.0198719316547274!GO:0008180;signalosome;0.0199133018431598!GO:0019206;nucleoside kinase activity;0.0202453595047232!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0203577276999201!GO:0006740;NADPH regeneration;0.0203577276999201!GO:0006098;pentose-phosphate shunt;0.0203577276999201!GO:0000228;nuclear chromosome;0.0208220041280229!GO:0000209;protein polyubiquitination;0.0208766965193194!GO:0016569;covalent chromatin modification;0.0209479672558935!GO:0005758;mitochondrial intermembrane space;0.0210192431494802!GO:0006730;one-carbon compound metabolic process;0.0212702669416497!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0214461966814825!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0215964491292355!GO:0000819;sister chromatid segregation;0.0220381181266287!GO:0031123;RNA 3'-end processing;0.0221364983169303!GO:0000070;mitotic sister chromatid segregation;0.0222500114802616!GO:0050178;phenylpyruvate tautomerase activity;0.0222500114802616!GO:0031529;ruffle organization and biogenesis;0.022315584169486!GO:0031970;organelle envelope lumen;0.0223448580918379!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0224812784972573!GO:0030032;lamellipodium biogenesis;0.0226292063603975!GO:0000118;histone deacetylase complex;0.0226292063603975!GO:0001832;blastocyst growth;0.0229662975032378!GO:0004523;ribonuclease H activity;0.023582160464795!GO:0008408;3'-5' exonuclease activity;0.0236247095521126!GO:0065009;regulation of a molecular function;0.0236410483950183!GO:0030518;steroid hormone receptor signaling pathway;0.023681814400035!GO:0048468;cell development;0.0243669099713423!GO:0030036;actin cytoskeleton organization and biogenesis;0.0244925405278473!GO:0016311;dephosphorylation;0.0247646726939616!GO:0051098;regulation of binding;0.0253205916649997!GO:0008538;proteasome activator activity;0.0256794880266423!GO:0022411;cellular component disassembly;0.0262943521281223!GO:0005732;small nucleolar ribonucleoprotein complex;0.0266154592642071!GO:0003923;GPI-anchor transamidase activity;0.0269664442053596!GO:0016255;attachment of GPI anchor to protein;0.0269664442053596!GO:0042765;GPI-anchor transamidase complex;0.0269664442053596!GO:0042026;protein refolding;0.0270695753761871!GO:0006458;'de novo' protein folding;0.0270695753761871!GO:0051084;'de novo' posttranslational protein folding;0.0270695753761871!GO:0042158;lipoprotein biosynthetic process;0.0270976404042251!GO:0007004;telomere maintenance via telomerase;0.0271950581409232!GO:0005869;dynactin complex;0.0275367609995988!GO:0005652;nuclear lamina;0.0276082458584136!GO:0035267;NuA4 histone acetyltransferase complex;0.0278170411618852!GO:0009124;nucleoside monophosphate biosynthetic process;0.0278170411618852!GO:0009123;nucleoside monophosphate metabolic process;0.0278170411618852!GO:0031371;ubiquitin conjugating enzyme complex;0.0279976749125866!GO:0030508;thiol-disulfide exchange intermediate activity;0.0280372713511915!GO:0046822;regulation of nucleocytoplasmic transport;0.0280973280168502!GO:0005663;DNA replication factor C complex;0.028228058344643!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0282895266561304!GO:0045045;secretory pathway;0.0284034652494008!GO:0046519;sphingoid metabolic process;0.0284392977075198!GO:0006400;tRNA modification;0.0284392977075198!GO:0003746;translation elongation factor activity;0.0287026210272056!GO:0006289;nucleotide-excision repair;0.0287372664967379!GO:0007033;vacuole organization and biogenesis;0.0287399883856538!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0288095504600428!GO:0000123;histone acetyltransferase complex;0.028904097108506!GO:0004721;phosphoprotein phosphatase activity;0.0294340467366507!GO:0008287;protein serine/threonine phosphatase complex;0.0294908428582578!GO:0046128;purine ribonucleoside metabolic process;0.0297039715024237!GO:0042278;purine nucleoside metabolic process;0.0297039715024237!GO:0048518;positive regulation of biological process;0.0300720050575888!GO:0046112;nucleobase biosynthetic process;0.0300907730439316!GO:0007346;regulation of progression through mitotic cell cycle;0.0302190480778999!GO:0050662;coenzyme binding;0.0302190480778999!GO:0008536;Ran GTPase binding;0.030375295041276!GO:0046982;protein heterodimerization activity;0.030375295041276!GO:0003756;protein disulfide isomerase activity;0.0307863489195773!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0307863489195773!GO:0006892;post-Golgi vesicle-mediated transport;0.0310260658927602!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0313836084589135!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0313901691768388!GO:0010257;NADH dehydrogenase complex assembly;0.0313901691768388!GO:0033108;mitochondrial respiratory chain complex assembly;0.0313901691768388!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0315639270278778!GO:0004722;protein serine/threonine phosphatase activity;0.0321204514836508!GO:0000096;sulfur amino acid metabolic process;0.0321307070569596!GO:0012506;vesicle membrane;0.0330644292801778!GO:0043550;regulation of lipid kinase activity;0.0334042554110046!GO:0031577;spindle checkpoint;0.0335287133110962!GO:0005784;translocon complex;0.0342988761596507!GO:0030911;TPR domain binding;0.0343292585926151!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0346082325286441!GO:0055083;monovalent inorganic anion homeostasis;0.0346082325286441!GO:0055064;chloride ion homeostasis;0.0346082325286441!GO:0030644;cellular chloride ion homeostasis;0.0346082325286441!GO:0048144;fibroblast proliferation;0.034895607119633!GO:0048145;regulation of fibroblast proliferation;0.034895607119633!GO:0017134;fibroblast growth factor binding;0.0352881953023756!GO:0030140;trans-Golgi network transport vesicle;0.0354220279311941!GO:0000077;DNA damage checkpoint;0.0356695864956925!GO:0007050;cell cycle arrest;0.0361151655727773!GO:0043154;negative regulation of caspase activity;0.0366236719499268!GO:0051338;regulation of transferase activity;0.0370591311923145!GO:0008637;apoptotic mitochondrial changes;0.0375579203792728!GO:0008610;lipid biosynthetic process;0.038117263059752!GO:0030027;lamellipodium;0.0381495079446326!GO:0006520;amino acid metabolic process;0.038347163522579!GO:0016585;chromatin remodeling complex;0.038347163522579!GO:0006220;pyrimidine nucleotide metabolic process;0.0383799840550561!GO:0008426;protein kinase C inhibitor activity;0.0386619884531338!GO:0006779;porphyrin biosynthetic process;0.0389316412952859!GO:0033014;tetrapyrrole biosynthetic process;0.0389316412952859!GO:0031902;late endosome membrane;0.0389316412952859!GO:0001726;ruffle;0.0393902306405522!GO:0048146;positive regulation of fibroblast proliferation;0.0395491687094702!GO:0008286;insulin receptor signaling pathway;0.040815910805345!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0408524517006448!GO:0006406;mRNA export from nucleus;0.0408524517006448!GO:0008156;negative regulation of DNA replication;0.0415267362105868!GO:0004860;protein kinase inhibitor activity;0.0415442066992008!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0417015509164257!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0417015509164257!GO:0019887;protein kinase regulator activity;0.0417318740666911!GO:0006301;postreplication repair;0.0418367088787385!GO:0006417;regulation of translation;0.0421552940665202!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0422008694074642!GO:0006360;transcription from RNA polymerase I promoter;0.0425183509608817!GO:0044450;microtubule organizing center part;0.0429999322804075!GO:0006643;membrane lipid metabolic process;0.0433827284707619!GO:0008632;apoptotic program;0.0434799027527659!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0440334121358397!GO:0019079;viral genome replication;0.0447950266795645!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0456485746833632!GO:0005875;microtubule associated complex;0.0456668112308657!GO:0030031;cell projection biogenesis;0.045849141934149!GO:0009303;rRNA transcription;0.0459251949166988!GO:0043130;ubiquitin binding;0.0469037436418118!GO:0032182;small conjugating protein binding;0.0469037436418118!GO:0006278;RNA-dependent DNA replication;0.0469514909290432!GO:0000152;nuclear ubiquitin ligase complex;0.0473848363896957!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0482562887136007!GO:0031301;integral to organelle membrane;0.0485450489027912!GO:0009161;ribonucleoside monophosphate metabolic process;0.0489380758753988!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0489380758753988!GO:0004214;dipeptidyl-peptidase I activity;0.0493062398714757!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0497808661974839 | |||
|sample_id=10759 | |sample_id=10759 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
|top_motifs=TFDP1:1.37979250874;TP53:1.33953135227;NFY{A,B,C}:1.33696072607;VSX1,2:1.32605012802;E2F1..5:1.21820152281;PAX1,9:1.1412822604;ONECUT1,2:1.11645726218;ELK1,4_GABP{A,B1}:1.11481453835;GFI1:1.09878727023;POU2F1..3:1.07824896646;SOX17:0.997966245799;GTF2A1,2:0.98488188704;ADNP_IRX_SIX_ZHX:0.949099128625;SOX2:0.914912368178;HBP1_HMGB_SSRP1_UBTF:0.906264341272;ZNF143:0.853414791326;SOX{8,9,10}:0.802579509314;POU6F1:0.780097509888;POU5F1:0.747125379267;CDC5L:0.741418273402;POU1F1:0.733192909438;PAX6:0.698196715898;NRF1:0.677630319993;NR6A1:0.667237432587;TEF:0.663622040804;TLX1..3_NFIC{dimer}:0.655061476897;BREu{core}:0.635593017123;ZIC1..3:0.622477196392;PITX1..3:0.621934987348;bHLH_family:0.620725638348;MYB:0.598533010191;ZFP161:0.558361038613;NR5A1,2:0.539602042061;FOXM1:0.492564545473;SP1:0.489911879621;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.48068647592;TFAP2B:0.472911193105;HIC1:0.4612967837;ALX1:0.454502776783;NANOG:0.453205340624;NKX6-1,2:0.425918307144;PAX8:0.422898457928;XCPE1{core}:0.42008111107;LEF1_TCF7_TCF7L1,2:0.399006646718;NR3C1:0.387175287176;SPZ1:0.372272311292;CRX:0.354240717096;RBPJ:0.341028049202;FOXL1:0.328132572975;TEAD1:0.317867890627;ZBTB16:0.313544890682;PBX1:0.305589382534;HOX{A4,D4}:0.302721762909;EGR1..3:0.302669778574;EN1,2:0.294319784696;FOX{F1,F2,J1}:0.289383565625;NKX3-1:0.278184524987;OCT4_SOX2{dimer}:0.264686420029;FOXQ1:0.263257128395;PPARG:0.261450445966;AIRE:0.255123848234;ELF1,2,4:0.231629509089;STAT5{A,B}:0.222452259313;FOS_FOS{B,L1}_JUN{B,D}:0.202178241794;MTE{core}:0.201594632967;NKX2-3_NKX2-5:0.200097037283;CDX1,2,4:0.181534288621;YY1:0.172713044298;MTF1:0.164668154091;FOX{I1,J2}:0.159594410434;GATA4:0.154628456146;PRRX1,2:0.145530030098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.135258537307;NKX2-1,4:0.125150521116;CUX2:0.116276744588;PATZ1:0.109417924524;FOXA2:0.0793582538713;TBX4,5:0.0586604566466;NR1H4:0.0584027610839;ARID5B:0.0501690004035;BACH2:0.0493431681868;POU3F1..4:0.0459170471277;ZNF384:0.0301291660158;IKZF1:0.0280985422525;NFIL3:0.0262348435249;RFX1:0.0242292018515;HES1:0.0223204786263;SNAI1..3:0.0173921543894;NFE2:-0.000311681137255;IKZF2:-0.0143489067638;NKX2-2,8:-0.0186629087192;MZF1:-0.0363828029592;MED-1{core}:-0.0394877733749;JUN:-0.0545502338796;FOSL2:-0.0634565039011;MYOD1:-0.0759977892843;GTF2I:-0.0853810104774;HOXA9_MEIS1:-0.0950301241082;TOPORS:-0.0965999329303;MAZ:-0.109734487738;ZEB1:-0.112258811246;GFI1B:-0.117171214619;FOXD3:-0.125583828589;STAT1,3:-0.126261067811;GATA6:-0.128076753923;FOXP1:-0.143238097728;TBP:-0.157614630311;HSF1,2:-0.162332742774;PDX1:-0.164530394644;HNF4A_NR2F1,2:-0.172364897788;KLF4:-0.173780063487;TFAP2{A,C}:-0.181762432526;HOX{A5,B5}:-0.182201301045;MYBL2:-0.189163178115;T:-0.212585648809;PAX4:-0.218225614045;ATF5_CREB3:-0.225391763427;MEF2{A,B,C,D}:-0.235185365232;HNF1A:-0.236208884518;CREB1:-0.240061803588;LMO2:-0.241190725968;NFE2L2:-0.247191597362;PRDM1:-0.256631860804;UFEwm:-0.268247452323;FOX{D1,D2}:-0.270255324013;HMGA1,2:-0.271355636303;AHR_ARNT_ARNT2:-0.280051535143;ATF4:-0.288904915108;BPTF:-0.303421530641;HLF:-0.306544773255;CEBPA,B_DDIT3:-0.309345890596;FOXO1,3,4:-0.309530714465;RUNX1..3:-0.321794378962;HOX{A6,A7,B6,B7}:-0.327630452428;RFX2..5_RFXANK_RFXAP:-0.332183192282;PAX3,7:-0.349850375685;NFKB1_REL_RELA:-0.372979904032;ALX4:-0.380547785646;LHX3,4:-0.407599767452;DBP:-0.411970746869;FOXN1:-0.413748724031;HAND1,2:-0.432597752847;ZNF423:-0.433607736004;SPI1:-0.443025386178;SPIB:-0.448470655091;PAX5:-0.455369805049;ETS1,2:-0.462725572776;RXR{A,B,G}:-0.47903333332;NFATC1..3:-0.485870896123;PAX2:-0.506970128764;REST:-0.515377882038;TFAP4:-0.533802159962;ZBTB6:-0.545642035347;AR:-0.554306421105;SMAD1..7,9:-0.577764364918;FOXP3:-0.592139970866;TFCP2:-0.603803784799;MYFfamily:-0.605622625599;IRF7:-0.611064582863;EBF1:-0.619238964872;GCM1,2:-0.652620954081;ZNF148:-0.668902791609;ESRRA:-0.674965207005;EP300:-0.683592419804;RREB1:-0.689239346053;RORA:-0.691339733093;NKX3-2:-0.709589967903;EVI1:-0.741488871477;STAT2,4,6:-0.748572742795;ATF2:-0.752619667163;TAL1_TCF{3,4,12}:-0.758138219555;XBP1:-0.76829161045;NHLH1,2:-0.78674049289;HMX1:-0.835004856129;IRF1,2:-0.899217747128;HIF1A:-0.917033480189;TGIF1:-0.920851301365;SOX5:-0.951061354874;TLX2:-0.980855730159;DMAP1_NCOR{1,2}_SMARC:-0.983841855475;GZF1:-0.999956753531;NFIX:-1.00116563186;NFE2L1:-1.01907414921;RXRA_VDR{dimer}:-1.05863576581;ZNF238:-1.06618575656;NANOG{mouse}:-1.07794650531;GLI1..3:-1.12456857013;SRF:-1.13678938988;ESR1:-1.14854368333;ATF6:-1.2738151414;SREBF1,2:-1.4088529457;MAFB:-1.92228768079 | |top_motifs=TFDP1:1.37979250874;TP53:1.33953135227;NFY{A,B,C}:1.33696072607;VSX1,2:1.32605012802;E2F1..5:1.21820152281;PAX1,9:1.1412822604;ONECUT1,2:1.11645726218;ELK1,4_GABP{A,B1}:1.11481453835;GFI1:1.09878727023;POU2F1..3:1.07824896646;SOX17:0.997966245799;GTF2A1,2:0.98488188704;ADNP_IRX_SIX_ZHX:0.949099128625;SOX2:0.914912368178;HBP1_HMGB_SSRP1_UBTF:0.906264341272;ZNF143:0.853414791326;SOX{8,9,10}:0.802579509314;POU6F1:0.780097509888;POU5F1:0.747125379267;CDC5L:0.741418273402;POU1F1:0.733192909438;PAX6:0.698196715898;NRF1:0.677630319993;NR6A1:0.667237432587;TEF:0.663622040804;TLX1..3_NFIC{dimer}:0.655061476897;BREu{core}:0.635593017123;ZIC1..3:0.622477196392;PITX1..3:0.621934987348;bHLH_family:0.620725638348;MYB:0.598533010191;ZFP161:0.558361038613;NR5A1,2:0.539602042061;FOXM1:0.492564545473;SP1:0.489911879621;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.48068647592;TFAP2B:0.472911193105;HIC1:0.4612967837;ALX1:0.454502776783;NANOG:0.453205340624;NKX6-1,2:0.425918307144;PAX8:0.422898457928;XCPE1{core}:0.42008111107;LEF1_TCF7_TCF7L1,2:0.399006646718;NR3C1:0.387175287176;SPZ1:0.372272311292;CRX:0.354240717096;RBPJ:0.341028049202;FOXL1:0.328132572975;TEAD1:0.317867890627;ZBTB16:0.313544890682;PBX1:0.305589382534;HOX{A4,D4}:0.302721762909;EGR1..3:0.302669778574;EN1,2:0.294319784696;FOX{F1,F2,J1}:0.289383565625;NKX3-1:0.278184524987;OCT4_SOX2{dimer}:0.264686420029;FOXQ1:0.263257128395;PPARG:0.261450445966;AIRE:0.255123848234;ELF1,2,4:0.231629509089;STAT5{A,B}:0.222452259313;FOS_FOS{B,L1}_JUN{B,D}:0.202178241794;MTE{core}:0.201594632967;NKX2-3_NKX2-5:0.200097037283;CDX1,2,4:0.181534288621;YY1:0.172713044298;MTF1:0.164668154091;FOX{I1,J2}:0.159594410434;GATA4:0.154628456146;PRRX1,2:0.145530030098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.135258537307;NKX2-1,4:0.125150521116;CUX2:0.116276744588;PATZ1:0.109417924524;FOXA2:0.0793582538713;TBX4,5:0.0586604566466;NR1H4:0.0584027610839;ARID5B:0.0501690004035;BACH2:0.0493431681868;POU3F1..4:0.0459170471277;ZNF384:0.0301291660158;IKZF1:0.0280985422525;NFIL3:0.0262348435249;RFX1:0.0242292018515;HES1:0.0223204786263;SNAI1..3:0.0173921543894;NFE2:-0.000311681137255;IKZF2:-0.0143489067638;NKX2-2,8:-0.0186629087192;MZF1:-0.0363828029592;MED-1{core}:-0.0394877733749;JUN:-0.0545502338796;FOSL2:-0.0634565039011;MYOD1:-0.0759977892843;GTF2I:-0.0853810104774;HOXA9_MEIS1:-0.0950301241082;TOPORS:-0.0965999329303;MAZ:-0.109734487738;ZEB1:-0.112258811246;GFI1B:-0.117171214619;FOXD3:-0.125583828589;STAT1,3:-0.126261067811;GATA6:-0.128076753923;FOXP1:-0.143238097728;TBP:-0.157614630311;HSF1,2:-0.162332742774;PDX1:-0.164530394644;HNF4A_NR2F1,2:-0.172364897788;KLF4:-0.173780063487;TFAP2{A,C}:-0.181762432526;HOX{A5,B5}:-0.182201301045;MYBL2:-0.189163178115;T:-0.212585648809;PAX4:-0.218225614045;ATF5_CREB3:-0.225391763427;MEF2{A,B,C,D}:-0.235185365232;HNF1A:-0.236208884518;CREB1:-0.240061803588;LMO2:-0.241190725968;NFE2L2:-0.247191597362;PRDM1:-0.256631860804;UFEwm:-0.268247452323;FOX{D1,D2}:-0.270255324013;HMGA1,2:-0.271355636303;AHR_ARNT_ARNT2:-0.280051535143;ATF4:-0.288904915108;BPTF:-0.303421530641;HLF:-0.306544773255;CEBPA,B_DDIT3:-0.309345890596;FOXO1,3,4:-0.309530714465;RUNX1..3:-0.321794378962;HOX{A6,A7,B6,B7}:-0.327630452428;RFX2..5_RFXANK_RFXAP:-0.332183192282;PAX3,7:-0.349850375685;NFKB1_REL_RELA:-0.372979904032;ALX4:-0.380547785646;LHX3,4:-0.407599767452;DBP:-0.411970746869;FOXN1:-0.413748724031;HAND1,2:-0.432597752847;ZNF423:-0.433607736004;SPI1:-0.443025386178;SPIB:-0.448470655091;PAX5:-0.455369805049;ETS1,2:-0.462725572776;RXR{A,B,G}:-0.47903333332;NFATC1..3:-0.485870896123;PAX2:-0.506970128764;REST:-0.515377882038;TFAP4:-0.533802159962;ZBTB6:-0.545642035347;AR:-0.554306421105;SMAD1..7,9:-0.577764364918;FOXP3:-0.592139970866;TFCP2:-0.603803784799;MYFfamily:-0.605622625599;IRF7:-0.611064582863;EBF1:-0.619238964872;GCM1,2:-0.652620954081;ZNF148:-0.668902791609;ESRRA:-0.674965207005;EP300:-0.683592419804;RREB1:-0.689239346053;RORA:-0.691339733093;NKX3-2:-0.709589967903;EVI1:-0.741488871477;STAT2,4,6:-0.748572742795;ATF2:-0.752619667163;TAL1_TCF{3,4,12}:-0.758138219555;XBP1:-0.76829161045;NHLH1,2:-0.78674049289;HMX1:-0.835004856129;IRF1,2:-0.899217747128;HIF1A:-0.917033480189;TGIF1:-0.920851301365;SOX5:-0.951061354874;TLX2:-0.980855730159;DMAP1_NCOR{1,2}_SMARC:-0.983841855475;GZF1:-0.999956753531;NFIX:-1.00116563186;NFE2L1:-1.01907414921;RXRA_VDR{dimer}:-1.05863576581;ZNF238:-1.06618575656;NANOG{mouse}:-1.07794650531;GLI1..3:-1.12456857013;SRF:-1.13678938988;ESR1:-1.14854368333;ATF6:-1.2738151414;SREBF1,2:-1.4088529457;MAFB:-1.92228768079 | ||
|xref= | |||
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Latest revision as of 15:03, 3 June 2020
| Name: | medulloblastoma cell line:ONS-76 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11861 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11861
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11861
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.361 |
| 10 | 10 | 0.133 |
| 100 | 100 | 0.864 |
| 101 | 101 | 0.308 |
| 102 | 102 | 0.545 |
| 103 | 103 | 0.277 |
| 104 | 104 | 0.872 |
| 105 | 105 | 0.817 |
| 106 | 106 | 0.00693 |
| 107 | 107 | 0.202 |
| 108 | 108 | 0.717 |
| 109 | 109 | 0.352 |
| 11 | 11 | 0.116 |
| 110 | 110 | 0.219 |
| 111 | 111 | 0.836 |
| 112 | 112 | 0.00976 |
| 113 | 113 | 0.858 |
| 114 | 114 | 0.193 |
| 115 | 115 | 0.722 |
| 116 | 116 | 0.379 |
| 117 | 117 | 0.218 |
| 118 | 118 | 0.487 |
| 119 | 119 | 0.0846 |
| 12 | 12 | 0.584 |
| 120 | 120 | 0.498 |
| 121 | 121 | 0.828 |
| 122 | 122 | 0.762 |
| 123 | 123 | 0.798 |
| 124 | 124 | 0.0712 |
| 125 | 125 | 0.478 |
| 126 | 126 | 0.252 |
| 127 | 127 | 0.841 |
| 128 | 128 | 0.0397 |
| 129 | 129 | 0.185 |
| 13 | 13 | 0.394 |
| 130 | 130 | 0.0786 |
| 131 | 131 | 0.807 |
| 132 | 132 | 0.925 |
| 133 | 133 | 0.033 |
| 134 | 134 | 0.125 |
| 135 | 135 | 0.0514 |
| 136 | 136 | 0.279 |
| 137 | 137 | 0.0482 |
| 138 | 138 | 0.216 |
| 139 | 139 | 0.00984 |
| 14 | 14 | 0.67 |
| 140 | 140 | 0.101 |
| 141 | 141 | 0.383 |
| 142 | 142 | 0.659 |
| 143 | 143 | 0.0362 |
| 144 | 144 | 0.146 |
| 145 | 145 | 0.164 |
| 146 | 146 | 0.942 |
| 147 | 147 | 0.521 |
| 148 | 148 | 0.113 |
| 149 | 149 | 0.0508 |
| 15 | 15 | 0.171 |
| 150 | 150 | 0.768 |
| 151 | 151 | 0.462 |
| 152 | 152 | 0.392 |
| 153 | 153 | 0.298 |
| 154 | 154 | 0.582 |
| 155 | 155 | 0.727 |
| 156 | 156 | 0.975 |
| 157 | 157 | 0.187 |
| 158 | 158 | 0.665 |
| 159 | 159 | 0.651 |
| 16 | 16 | 0.243 |
| 160 | 160 | 0.612 |
| 161 | 161 | 0.637 |
| 162 | 162 | 0.699 |
| 163 | 163 | 0.317 |
| 164 | 164 | 0.0699 |
| 165 | 165 | 0.659 |
| 166 | 166 | 0.0495 |
| 167 | 167 | 0.629 |
| 168 | 168 | 0.218 |
| 169 | 169 | 0.0824 |
| 17 | 17 | 0.116 |
| 18 | 18 | 0.0787 |
| 19 | 19 | 0.0979 |
| 2 | 2 | 0.177 |
| 20 | 20 | 0.761 |
| 21 | 21 | 0.153 |
| 22 | 22 | 0.229 |
| 23 | 23 | 0.0451 |
| 24 | 24 | 0.6 |
| 25 | 25 | 0.63 |
| 26 | 26 | 0.508 |
| 27 | 27 | 0.148 |
| 28 | 28 | 0.802 |
| 29 | 29 | 0.331 |
| 3 | 3 | 0.152 |
| 30 | 30 | 0.943 |
| 31 | 31 | 0.503 |
| 32 | 32 | 0.00238 |
| 33 | 33 | 0.479 |
| 34 | 34 | 0.277 |
| 35 | 35 | 0.0559 |
| 36 | 36 | 0.371 |
| 37 | 37 | 0.0938 |
| 38 | 38 | 0.556 |
| 39 | 39 | 0.389 |
| 4 | 4 | 0.859 |
| 40 | 40 | 0.474 |
| 41 | 41 | 0.367 |
| 42 | 42 | 0.967 |
| 43 | 43 | 0.0477 |
| 44 | 44 | 0.335 |
| 45 | 45 | 0.529 |
| 46 | 46 | 0.164 |
| 47 | 47 | 0.679 |
| 48 | 48 | 0.505 |
| 49 | 49 | 0.0984 |
| 5 | 5 | 0.0581 |
| 50 | 50 | 0.698 |
| 51 | 51 | 0.436 |
| 52 | 52 | 0.105 |
| 53 | 53 | 0.623 |
| 54 | 54 | 0.515 |
| 55 | 55 | 0.505 |
| 56 | 56 | 0.503 |
| 57 | 57 | 0.77 |
| 58 | 58 | 0.0733 |
| 59 | 59 | 0.0435 |
| 6 | 6 | 0.289 |
| 60 | 60 | 0.0277 |
| 61 | 61 | 0.477 |
| 62 | 62 | 0.00791 |
| 63 | 63 | 0.319 |
| 64 | 64 | 0.383 |
| 65 | 65 | 0.119 |
| 66 | 66 | 0.085 |
| 67 | 67 | 0.424 |
| 68 | 68 | 0.683 |
| 69 | 69 | 0.788 |
| 7 | 7 | 0.505 |
| 70 | 70 | 0.0124 |
| 71 | 71 | 0.147 |
| 72 | 72 | 0.255 |
| 73 | 73 | 0.273 |
| 74 | 74 | 0.591 |
| 75 | 75 | 0.189 |
| 76 | 76 | 0.754 |
| 77 | 77 | 0.182 |
| 78 | 78 | 0.262 |
| 79 | 79 | 0.00823 |
| 8 | 8 | 0.226 |
| 80 | 80 | 0.0639 |
| 81 | 81 | 0.176 |
| 82 | 82 | 0.00834 |
| 83 | 83 | 0.844 |
| 84 | 84 | 0.303 |
| 85 | 85 | 7.20424e-4 |
| 86 | 86 | 0.179 |
| 87 | 87 | 0.585 |
| 88 | 88 | 0.4 |
| 89 | 89 | 0.133 |
| 9 | 9 | 0.183 |
| 90 | 90 | 0.0424 |
| 91 | 91 | 0.184 |
| 92 | 92 | 0.00524 |
| 93 | 93 | 0.387 |
| 94 | 94 | 0.126 |
| 95 | 95 | 0.501 |
| 96 | 96 | 0.0482 |
| 97 | 97 | 0.787 |
| 98 | 98 | 0.434 |
| 99 | 99 | 0.919 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11861
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101359 medulloblastoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0101359 (medulloblastoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)
