FF:10807-111A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005647 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008021;DRR008893;DRZ000318;DRZ001703;DRZ011668;DRZ013053 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100977,FF:0100306,FF:0100811,FF:0101591 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100977,FF:0101120 | |fonse_cell_line=FF:0100977,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100977,FF:0101120 | |fonse_cell_line_closure=FF:0100977,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aPA-1.CNhs11890.10807-111A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10807-111A6 | |id=FF:10807-111A6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100306;;FF:0101591 | ||
|is_obsolete= | |||
|library_id=CNhs11890 | |||
|library_id_phase_based=2:CNhs11890 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10807 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10807 | |||
|name=teratocarcinoma cell line:PA-1 | |name=teratocarcinoma cell line:PA-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11890,LSID830,release010,COMPLETED | |profile_hcage=CNhs11890,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|repeat_enrich_byname=0,0,0,0,0.0413711906379235,0,0.0516025752814806,0.244771402840198,0,0,0,0,0.0977197726149849,0,0,0,0.0558726954840505,0.0488598863074925,0.518540179262516,0.131373225338322,0.0258012876407403,0,-0.131645039165725,0,0.177440020820952,0,0.00145887581192178,0,0,0,0,0.13940654187563,0.720437990707182,0,-0.0504125515893149,0,0,0,0,0,-0.253869655616927,0,0.114238455763385,-0.0167416857958876,0,0,0,0,-0.221380783026832,0,0.182172086975874,0.129689089285437,0.244771402840198,0.430443265273539,-0.04680465889238,0,0,0,0.122171351499737,-0.284714301208733,0,0,-0.0959785641111337,0.523547911191285,0,0,-0.391044581551635,0,-0.102101175553736,0.051478992738921,0,0.352414344439182,0,0,0,0,0,0.0977197726149849,0,0,0,0,0,0.189259809992222,-0.0239370259093539,0.0293284219044779,0.0516025752814806,0.0516025752814806,0.0968227427088905,-0.114581514109513,0,0,-0.233879614080937,0.331896523396467,0.08723203702019,0.290444814430165,0,0.000661843759701741,0.023375888418756,-0.237393805114824,-0.165129798603697,-0.0957992740896579,-0.189981719549847,0,-0.12020406044435,0.0300563625063444,0.143017767127997,0.156813308161273,0.0849989486886763,0.0091815524881409,0.134107060708311,0,0.0516025752814806,0.0618976153963268,-0.146660502690743,0,0.0516025752814806,-0.350708172601144,0.161479980442842,-0.050972930956607,-0.135872239709325,0.142715797430293,-0.142695511388058,0.388718665812676,-0.457436452896595,0,-0.163841910714465,0.00608808523659965,0,0.040963424351169,0.00684802786670085,-0.106030823465956,0.107601457173242,0,0.207206547963792,-0.0683442610773682,0.0258012876407403,-0.0190665006776385,0.12204756419929,0.840722077377367,0.049082726518352,0.123422792136648,0,0,-0.0073942467723529,0.0241673215344663,0,-0.0874817541533168,-0.539492143030166,0.264741504800769,0,-0.0299443517881253,0.0904247592912789,0.0247604851123327,0,-0.0446737653341354,-0.0806833456041872,0,-0.071405698762879,0.0125916375472711,0.0321773653497575,-0.393610298178498,-0.0255841544633729,-0.422394805391737,0.363183999631761,-0.0392879240009586,0.12436166615084,0.222416802586639,-0.0759963546572233,0.120463706246785,-0.0881268324752877,-0.0104679998023732,0.0298179542550321,-0.325069998720583,-0.0261263333451188,0.151383828037897,0.0977197726149849,0.0861276549776966,0,0.16692474340758,0,0.174863130197933,-0.54043375147324,0.0583076917756278,-0.273201716937052,0.0250605117917228,0.215042390824242,-0.610690916953022,0,0.132789099316085,0,0.848557857659746,0.329447519113968,0.0927878870653136,0.001959025009504,0.301353432309935,0,0.161669344626857,0,0,-0.197849576262551,0.279203928411497,0,-0.161080883247433,-0.279703781080195,-0.182585214751708,0.0964381841739206,0.0977197726149849,0,-0.224069511549138,0,0,0.320610854825539,0.0359186926213388,0.823437125050835,-0.113919799611126,-0.072581054649882,0.972678646958863,0,0,-0.177527765965176,0,0.630272153588897,0,0,0.0934563939941942,0,0,0,0.441903978345838,0.0353707209303867,0,0,0,0,0.0488598863074925,0,0.00763350862132875,0.404047078257337,0.508984298564606,0,0.125345305966181,0,0,0,0,0,0,0,0,-0.342395796824503,0.0082805440219717,0.121753987163778,0,0,0,0,0.475460607221298,-0.0257965412737715,0.0516025752814806,0.0455773143233206,0,0.0488598863074925,0,0,0.0532655520864185,0,0,0,0.0516025752814806,-0.00612788177218337,-0.0887717771590878,0,0,0,0.123410370429845,0,0,0,0,0.172836722292644,0,0,0,0.0731557865139865,-0.302958851761597,0.671860046625278,0,-0.120922209254033,0.194793213833295,0.560646151342963,0,0,0.395006001541881,0,0.0543362951065215,0.0981257132091546,0,0.0516025752814806,0,0,0,0,0,0.0977197726149849,0,-0.162711937118275,0,0,0,0,0,0,0,0,0,0,0,-0.291018093020247,0.120185200950344,0,0,0.0516025752814806,0.0516025752814806,0,0,0,0.0247538632285893,0.103468871827921,0.0258012876407403,0,0,0,0,0,0,0,0.344903051957114,0,0,0,0,0,0.20605920952701,0,0,0,0,0.0666698321400718,0,0,-0.179642359578529,0,0,0,0,0,0,0,0.0516025752814806,0,0,0,0,0,-0.0717165107539671,-0.549145571644731,0,0,0,0,0,0.0977197726149849,0,-0.0624240405972359,0,0.0516025752814806,0,0,-0.0161646010939923,0,0,0,0.375018217659451,0,-0.0625982574714012,0,0,0,0,0,0.0814806134473654,0.122385701420099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218792619278503,-0.0207568369697051,-0.124061697390821,-0.0568589461625992,0,0,-0.126423723828614,0,0,0,0,0,0,0.0175194622789654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177440020820952,0,0,0,0,0,0,0.0931345326205909,0,0,0,0,0,0,0,0.256470236632884,0,0,-0.0920328098005262,0,0,0.0217154923039938,0.0117040169744089,0.0345729284751365,0,-0.0181649651762982,-0.124797118474856,0.196943056314873,0,0,0,0.303814215368255,0,0,0,0.0516025752814806,0.0726291544567286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441903978345838,-0.0139164684727977,0,0,0,0,0,0,0,0,0,0,0,0,0.0258012876407403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0516025752814806,0.0488598863074925,0,0,0.0516025752814806,0,0,0,0.103568533442552,0.244771402840198,0,0.244771402840198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=30.18897 | |rna_weight_ug=30.18897 | ||
|sample_age=12 | |sample_age=12 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb9061 | |sample_cell_catalog=jcrb9061 | ||
|sample_cell_line=PA-1 | |sample_cell_line=PA-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.47031031070789e-280!GO:0043226;organelle;4.03108372755183e-236!GO:0043229;intracellular organelle;2.20373883301857e-235!GO:0043231;intracellular membrane-bound organelle;2.73861111434402e-227!GO:0043227;membrane-bound organelle;3.67713583128066e-227!GO:0005737;cytoplasm;1.84611523937595e-181!GO:0044422;organelle part;4.42646829760431e-163!GO:0044446;intracellular organelle part;8.9804962820511e-162!GO:0044444;cytoplasmic part;4.86017684098524e-120!GO:0032991;macromolecular complex;2.37288035981723e-113!GO:0005634;nucleus;8.15488246732732e-109!GO:0044237;cellular metabolic process;1.30163742462148e-107!GO:0044238;primary metabolic process;4.57631413991508e-107!GO:0043170;macromolecule metabolic process;1.5678105274358e-100!GO:0030529;ribonucleoprotein complex;6.21421222573473e-95!GO:0044428;nuclear part;2.82946408361262e-87!GO:0043233;organelle lumen;1.95961428122661e-85!GO:0031974;membrane-enclosed lumen;1.95961428122661e-85!GO:0003723;RNA binding;1.64062174220538e-83!GO:0005739;mitochondrion;1.00207971370188e-75!GO:0005515;protein binding;4.98405561430191e-72!GO:0043283;biopolymer metabolic process;5.5195457118726e-64!GO:0006396;RNA processing;4.53879074792633e-59!GO:0016043;cellular component organization and biogenesis;1.08155171640776e-57!GO:0043234;protein complex;1.10574056212523e-57!GO:0005840;ribosome;3.67399613196234e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.64939343193989e-56!GO:0031981;nuclear lumen;1.84565711634243e-53!GO:0010467;gene expression;3.40608890312775e-53!GO:0006412;translation;1.14736007255521e-50!GO:0044429;mitochondrial part;4.86533577016066e-50!GO:0019538;protein metabolic process;1.46629175483752e-49!GO:0003735;structural constituent of ribosome;2.04137850869372e-48!GO:0043228;non-membrane-bound organelle;2.40790481780166e-48!GO:0043232;intracellular non-membrane-bound organelle;2.40790481780166e-48!GO:0031090;organelle membrane;1.95285118947624e-46!GO:0016071;mRNA metabolic process;3.37896041293551e-45!GO:0006996;organelle organization and biogenesis;9.81603603010574e-45!GO:0031967;organelle envelope;8.49985541695821e-44!GO:0031975;envelope;2.27121503100015e-43!GO:0044260;cellular macromolecule metabolic process;3.04909631730222e-43!GO:0044267;cellular protein metabolic process;9.1974100379447e-43!GO:0033279;ribosomal subunit;1.07788899408341e-42!GO:0009058;biosynthetic process;2.51290701355593e-42!GO:0008380;RNA splicing;3.16863551667714e-42!GO:0065003;macromolecular complex assembly;9.83896122544414e-42!GO:0006259;DNA metabolic process;1.65218389752383e-41!GO:0033036;macromolecule localization;3.63153369811497e-41!GO:0015031;protein transport;4.89425732817814e-41!GO:0044249;cellular biosynthetic process;9.65243880615854e-41!GO:0006397;mRNA processing;2.03343247847936e-38!GO:0003676;nucleic acid binding;4.0175181678972e-38!GO:0046907;intracellular transport;5.67345778090296e-38!GO:0009059;macromolecule biosynthetic process;6.00984840604454e-38!GO:0022607;cellular component assembly;1.25075009939368e-36!GO:0008104;protein localization;1.25075009939368e-36!GO:0045184;establishment of protein localization;9.45503846782677e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.62448998725997e-35!GO:0005654;nucleoplasm;2.96125674092651e-33!GO:0005829;cytosol;5.26330330257955e-32!GO:0007049;cell cycle;6.21024445131809e-32!GO:0000166;nucleotide binding;1.4802272343257e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.16595580635391e-31!GO:0019866;organelle inner membrane;1.8196989402298e-30!GO:0005740;mitochondrial envelope;2.12520147555407e-30!GO:0005681;spliceosome;1.1199752403713e-29!GO:0006886;intracellular protein transport;4.04293789033789e-29!GO:0031966;mitochondrial membrane;2.43489138275093e-28!GO:0005743;mitochondrial inner membrane;1.03945067183654e-27!GO:0044451;nucleoplasm part;4.30741961989466e-27!GO:0016070;RNA metabolic process;7.47855202970063e-27!GO:0000278;mitotic cell cycle;1.56714672229192e-25!GO:0005694;chromosome;5.00349324974684e-25!GO:0051649;establishment of cellular localization;1.78102709761039e-24!GO:0006974;response to DNA damage stimulus;2.05133471964012e-24!GO:0022402;cell cycle process;2.96726118600609e-24!GO:0051641;cellular localization;6.77316617034866e-24!GO:0031980;mitochondrial lumen;2.50710051241844e-23!GO:0005759;mitochondrial matrix;2.50710051241844e-23!GO:0016874;ligase activity;3.41575494288151e-23!GO:0006119;oxidative phosphorylation;4.53130802223585e-23!GO:0044445;cytosolic part;8.37687696934908e-23!GO:0044455;mitochondrial membrane part;9.64437360693048e-23!GO:0015934;large ribosomal subunit;2.39861615144769e-22!GO:0016462;pyrophosphatase activity;3.3779324989132e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.42474799356106e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;6.73820057727803e-22!GO:0032553;ribonucleotide binding;7.8663220188742e-22!GO:0032555;purine ribonucleotide binding;7.8663220188742e-22!GO:0044427;chromosomal part;9.92634869472402e-22!GO:0051276;chromosome organization and biogenesis;1.48569875437302e-21!GO:0015935;small ribosomal subunit;1.71831649381701e-21!GO:0017076;purine nucleotide binding;2.73280863151054e-21!GO:0000087;M phase of mitotic cell cycle;4.80975670688786e-21!GO:0005730;nucleolus;6.36386077381698e-21!GO:0017111;nucleoside-triphosphatase activity;6.66453305354388e-21!GO:0006281;DNA repair;1.1214324292836e-20!GO:0007067;mitosis;1.35973455576497e-20!GO:0022618;protein-RNA complex assembly;3.74194467222655e-20!GO:0051301;cell division;5.11230624032944e-20!GO:0005524;ATP binding;6.17802837938618e-20!GO:0006512;ubiquitin cycle;1.19178666456681e-19!GO:0022403;cell cycle phase;1.26366736402874e-19!GO:0032559;adenyl ribonucleotide binding;2.89992745686664e-19!GO:0044265;cellular macromolecule catabolic process;6.03507636862765e-19!GO:0006457;protein folding;1.18122555427542e-18!GO:0030554;adenyl nucleotide binding;1.65700887275632e-18!GO:0012505;endomembrane system;1.00886795814322e-17!GO:0000279;M phase;2.04643879018486e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.38087750048603e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;3.71154939794196e-17!GO:0005746;mitochondrial respiratory chain;6.31330685368394e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.1549389998814e-17!GO:0031965;nuclear membrane;1.17274110532995e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.30858870541533e-16!GO:0019941;modification-dependent protein catabolic process;1.40189700029856e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.40189700029856e-16!GO:0043412;biopolymer modification;1.57961743711449e-16!GO:0006323;DNA packaging;1.79227435686793e-16!GO:0044257;cellular protein catabolic process;2.14291888869462e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.26323693248097e-16!GO:0003954;NADH dehydrogenase activity;2.26323693248097e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.26323693248097e-16!GO:0044453;nuclear membrane part;2.84420660277172e-16!GO:0008135;translation factor activity, nucleic acid binding;2.88963881088911e-16!GO:0005761;mitochondrial ribosome;3.22495124855391e-16!GO:0000313;organellar ribosome;3.22495124855391e-16!GO:0006260;DNA replication;3.88802122778152e-16!GO:0043285;biopolymer catabolic process;6.38989472737315e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.45771752966006e-16!GO:0009057;macromolecule catabolic process;8.46489492550856e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.09286219274371e-15!GO:0000375;RNA splicing, via transesterification reactions;1.09286219274371e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.09286219274371e-15!GO:0042254;ribosome biogenesis and assembly;1.12824521313705e-15!GO:0044248;cellular catabolic process;1.58623656911751e-15!GO:0009719;response to endogenous stimulus;2.24897759075323e-15!GO:0048770;pigment granule;2.52489886782119e-15!GO:0042470;melanosome;2.52489886782119e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.88474720352571e-15!GO:0051186;cofactor metabolic process;7.67542089073275e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.39845579807249e-14!GO:0042773;ATP synthesis coupled electron transport;2.39845579807249e-14!GO:0005635;nuclear envelope;2.73122725475567e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.91066444135949e-14!GO:0045271;respiratory chain complex I;2.91066444135949e-14!GO:0005747;mitochondrial respiratory chain complex I;2.91066444135949e-14!GO:0005643;nuclear pore;3.35436697676658e-14!GO:0006605;protein targeting;3.8173828517207e-14!GO:0006464;protein modification process;4.20239651359043e-14!GO:0008134;transcription factor binding;4.40102421917167e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.43010958227702e-14!GO:0006403;RNA localization;1.30922210787671e-13!GO:0005783;endoplasmic reticulum;1.53454683576954e-13!GO:0030163;protein catabolic process;1.77046783976062e-13!GO:0050657;nucleic acid transport;2.08954885798025e-13!GO:0051236;establishment of RNA localization;2.08954885798025e-13!GO:0050658;RNA transport;2.08954885798025e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.58692099110313e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.26604617700311e-13!GO:0006399;tRNA metabolic process;3.57844533990288e-13!GO:0016887;ATPase activity;4.43826875581388e-13!GO:0043687;post-translational protein modification;4.76219131728025e-13!GO:0006461;protein complex assembly;7.12388727732885e-13!GO:0042623;ATPase activity, coupled;7.96131435021558e-13!GO:0015630;microtubule cytoskeleton;1.17954785869578e-12!GO:0006732;coenzyme metabolic process;1.18440636508301e-12!GO:0003743;translation initiation factor activity;1.403723004834e-12!GO:0006413;translational initiation;1.54893966196847e-12!GO:0065004;protein-DNA complex assembly;1.58973524348339e-12!GO:0065002;intracellular protein transport across a membrane;1.66698257571989e-12!GO:0048193;Golgi vesicle transport;1.77529523864575e-12!GO:0051082;unfolded protein binding;1.79998576948899e-12!GO:0016604;nuclear body;3.5159667617056e-12!GO:0004386;helicase activity;6.41038425306736e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.70615974115003e-12!GO:0044432;endoplasmic reticulum part;8.96910734420787e-12!GO:0000785;chromatin;1.01861838910875e-11!GO:0046930;pore complex;1.43427102166671e-11!GO:0008565;protein transporter activity;1.49615750269318e-11!GO:0005794;Golgi apparatus;1.59473904655708e-11!GO:0006446;regulation of translational initiation;1.61052144022974e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.61965067731027e-11!GO:0051028;mRNA transport;2.18331534042085e-11!GO:0051726;regulation of cell cycle;2.32406593167394e-11!GO:0000074;regulation of progression through cell cycle;2.50040444314607e-11!GO:0006913;nucleocytoplasmic transport;4.86595668537328e-11!GO:0006333;chromatin assembly or disassembly;1.27013520934361e-10!GO:0051169;nuclear transport;1.37292937922694e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.84663471846378e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.84663471846378e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.84663471846378e-10!GO:0006364;rRNA processing;3.23625417452214e-10!GO:0016740;transferase activity;4.46285520177437e-10!GO:0009055;electron carrier activity;4.54607077945478e-10!GO:0008639;small protein conjugating enzyme activity;4.7805301628345e-10!GO:0006163;purine nucleotide metabolic process;5.6679751764008e-10!GO:0008026;ATP-dependent helicase activity;5.80031154670149e-10!GO:0016607;nuclear speck;5.86212636913182e-10!GO:0043038;amino acid activation;6.27882445181558e-10!GO:0006418;tRNA aminoacylation for protein translation;6.27882445181558e-10!GO:0043039;tRNA aminoacylation;6.27882445181558e-10!GO:0016192;vesicle-mediated transport;7.35462414118597e-10!GO:0004842;ubiquitin-protein ligase activity;7.37485591311773e-10!GO:0030532;small nuclear ribonucleoprotein complex;8.24630333081158e-10!GO:0009259;ribonucleotide metabolic process;8.52737893104027e-10!GO:0016072;rRNA metabolic process;9.11607940210824e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.24912671425534e-09!GO:0019787;small conjugating protein ligase activity;1.81625775433189e-09!GO:0006164;purine nucleotide biosynthetic process;1.97700826464757e-09!GO:0000775;chromosome, pericentric region;2.38744470415028e-09!GO:0016568;chromatin modification;2.7242643205672e-09!GO:0006366;transcription from RNA polymerase II promoter;4.5790423282041e-09!GO:0006261;DNA-dependent DNA replication;4.84027933288844e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.14097859542421e-09!GO:0017038;protein import;6.16927889533427e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.84922071025104e-09!GO:0050794;regulation of cellular process;8.49140654917228e-09!GO:0009056;catabolic process;9.07442696819815e-09!GO:0009150;purine ribonucleotide metabolic process;1.00449440939822e-08!GO:0009260;ribonucleotide biosynthetic process;1.05547342836475e-08!GO:0016881;acid-amino acid ligase activity;1.37661416539608e-08!GO:0031497;chromatin assembly;1.57727431922709e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.78056035527039e-08!GO:0006334;nucleosome assembly;1.86637814236881e-08!GO:0006752;group transfer coenzyme metabolic process;2.36093792587235e-08!GO:0043566;structure-specific DNA binding;2.43877012505056e-08!GO:0051188;cofactor biosynthetic process;2.52950764867444e-08!GO:0005789;endoplasmic reticulum membrane;2.675559312239e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.64485958300654e-08!GO:0005819;spindle;3.64485958300654e-08!GO:0006793;phosphorus metabolic process;3.72497655782765e-08!GO:0006796;phosphate metabolic process;3.72497655782765e-08!GO:0015986;ATP synthesis coupled proton transport;3.86937177994213e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.86937177994213e-08!GO:0043623;cellular protein complex assembly;4.97874224693865e-08!GO:0007005;mitochondrion organization and biogenesis;5.04163775939847e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.07092633659403e-08!GO:0005793;ER-Golgi intermediate compartment;5.38726975240121e-08!GO:0016779;nucleotidyltransferase activity;5.66440565437307e-08!GO:0003712;transcription cofactor activity;6.82161378472222e-08!GO:0003697;single-stranded DNA binding;7.47263737185005e-08!GO:0005667;transcription factor complex;8.96650800334715e-08!GO:0003899;DNA-directed RNA polymerase activity;9.11654509175509e-08!GO:0009060;aerobic respiration;1.47064339383591e-07!GO:0032446;protein modification by small protein conjugation;2.02270079062813e-07!GO:0048475;coated membrane;2.10106096173503e-07!GO:0030117;membrane coat;2.10106096173503e-07!GO:0005813;centrosome;2.1528147782244e-07!GO:0007051;spindle organization and biogenesis;2.65723103981253e-07!GO:0045333;cellular respiration;2.76671596169877e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.85089935271147e-07!GO:0019829;cation-transporting ATPase activity;3.09475736665988e-07!GO:0009141;nucleoside triphosphate metabolic process;3.5804994648184e-07!GO:0016567;protein ubiquitination;3.6822699956933e-07!GO:0000245;spliceosome assembly;3.77138082386249e-07!GO:0008094;DNA-dependent ATPase activity;3.90812804816373e-07!GO:0005815;microtubule organizing center;4.11911389846168e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.18385104150257e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.18385104150257e-07!GO:0000075;cell cycle checkpoint;4.92049748082309e-07!GO:0045259;proton-transporting ATP synthase complex;5.16788706577151e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.39826088733321e-07!GO:0046034;ATP metabolic process;5.47599143622223e-07!GO:0006754;ATP biosynthetic process;5.62727510767859e-07!GO:0006753;nucleoside phosphate metabolic process;5.62727510767859e-07!GO:0009108;coenzyme biosynthetic process;5.98986560509107e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.2032245744747e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.2032245744747e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.85317515306189e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.45613186566749e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.58146492611963e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.58146492611963e-07!GO:0006099;tricarboxylic acid cycle;1.02517680811869e-06!GO:0046356;acetyl-CoA catabolic process;1.02517680811869e-06!GO:0030120;vesicle coat;1.06710582993921e-06!GO:0030662;coated vesicle membrane;1.06710582993921e-06!GO:0005657;replication fork;1.14167752907581e-06!GO:0009117;nucleotide metabolic process;1.16165020858412e-06!GO:0016310;phosphorylation;1.24760468939766e-06!GO:0006084;acetyl-CoA metabolic process;1.51327950295554e-06!GO:0051329;interphase of mitotic cell cycle;1.64017606794628e-06!GO:0019222;regulation of metabolic process;1.74025896054073e-06!GO:0007010;cytoskeleton organization and biogenesis;1.86247313334767e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.96323204370733e-06!GO:0012501;programmed cell death;2.34865022835936e-06!GO:0006915;apoptosis;3.2527181908763e-06!GO:0005762;mitochondrial large ribosomal subunit;3.49955720862803e-06!GO:0000315;organellar large ribosomal subunit;3.49955720862803e-06!GO:0009109;coenzyme catabolic process;5.76245614296028e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.81308876777127e-06!GO:0051246;regulation of protein metabolic process;6.04067092140239e-06!GO:0051325;interphase;7.21702236339289e-06!GO:0006606;protein import into nucleus;8.85323873629353e-06!GO:0016853;isomerase activity;8.85323873629353e-06!GO:0000151;ubiquitin ligase complex;9.89578540644221e-06!GO:0003924;GTPase activity;1.0245262470463e-05!GO:0051170;nuclear import;1.05064197014871e-05!GO:0003724;RNA helicase activity;1.19052111546526e-05!GO:0005874;microtubule;1.27702914812306e-05!GO:0050789;regulation of biological process;1.39600961359707e-05!GO:0000776;kinetochore;1.40299393357124e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.4585678464937e-05!GO:0006613;cotranslational protein targeting to membrane;1.48948313765775e-05!GO:0003690;double-stranded DNA binding;1.54882867008292e-05!GO:0005768;endosome;1.63536154793758e-05!GO:0051187;cofactor catabolic process;1.7475668294593e-05!GO:0005770;late endosome;1.81136524226419e-05!GO:0008654;phospholipid biosynthetic process;1.85248549229666e-05!GO:0044431;Golgi apparatus part;1.93691960397362e-05!GO:0006839;mitochondrial transport;1.95311505945933e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.02162332430096e-05!GO:0000314;organellar small ribosomal subunit;2.04375065635869e-05!GO:0005763;mitochondrial small ribosomal subunit;2.04375065635869e-05!GO:0051427;hormone receptor binding;2.19143629129217e-05!GO:0051168;nuclear export;2.6073149459017e-05!GO:0008168;methyltransferase activity;2.62363402712299e-05!GO:0008219;cell death;3.47594210688324e-05!GO:0016265;death;3.47594210688324e-05!GO:0016363;nuclear matrix;3.60513971525529e-05!GO:0048523;negative regulation of cellular process;3.65084711199204e-05!GO:0006520;amino acid metabolic process;3.69460859720692e-05!GO:0005798;Golgi-associated vesicle;3.70579838827798e-05!GO:0000059;protein import into nucleus, docking;3.71176031157268e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.04624499279098e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.33178477470183e-05!GO:0005788;endoplasmic reticulum lumen;4.40682680973657e-05!GO:0006383;transcription from RNA polymerase III promoter;4.42332680994158e-05!GO:0035257;nuclear hormone receptor binding;4.56879102597585e-05!GO:0005525;GTP binding;5.01601135540451e-05!GO:0030880;RNA polymerase complex;6.08640942842863e-05!GO:0000786;nucleosome;6.45118644352098e-05!GO:0006302;double-strand break repair;6.49775828420278e-05!GO:0016859;cis-trans isomerase activity;7.88985738194183e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.99852782635227e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.8427139050605e-05!GO:0008033;tRNA processing;9.4402969641272e-05!GO:0007017;microtubule-based process;0.00010887395931206!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000109906723602135!GO:0031323;regulation of cellular metabolic process;0.000115468811085825!GO:0043021;ribonucleoprotein binding;0.000128259255314295!GO:0006352;transcription initiation;0.00012990165176893!GO:0031324;negative regulation of cellular metabolic process;0.00012990165176893!GO:0045454;cell redox homeostasis;0.000129906377288963!GO:0006350;transcription;0.000130292426361858!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000148870648489453!GO:0000428;DNA-directed RNA polymerase complex;0.000148870648489453!GO:0043681;protein import into mitochondrion;0.000149162067190836!GO:0016787;hydrolase activity;0.000153541077171177!GO:0006402;mRNA catabolic process;0.000153834736309465!GO:0019899;enzyme binding;0.000161273321634835!GO:0044440;endosomal part;0.000164178063509759!GO:0010008;endosome membrane;0.000164178063509759!GO:0003682;chromatin binding;0.000164891485867795!GO:0003684;damaged DNA binding;0.000165812869367128!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00018619617792767!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000189234447986715!GO:0044452;nucleolar part;0.00020208862347251!GO:0003729;mRNA binding;0.000203528726767665!GO:0051052;regulation of DNA metabolic process;0.00020429458339791!GO:0007093;mitotic cell cycle checkpoint;0.000206866575147448!GO:0005839;proteasome core complex (sensu Eukaryota);0.000212699935137568!GO:0031252;leading edge;0.000215807352854449!GO:0007059;chromosome segregation;0.000217218736086801!GO:0008092;cytoskeletal protein binding;0.000218515367337762!GO:0031988;membrane-bound vesicle;0.000222065687128205!GO:0045786;negative regulation of progression through cell cycle;0.000223508840453884!GO:0006612;protein targeting to membrane;0.000238827800712577!GO:0016023;cytoplasmic membrane-bound vesicle;0.000274050581342872!GO:0006541;glutamine metabolic process;0.000284442689689165!GO:0007006;mitochondrial membrane organization and biogenesis;0.000299194976505147!GO:0007088;regulation of mitosis;0.000308290265904653!GO:0015631;tubulin binding;0.000311634000435965!GO:0005769;early endosome;0.000314956955132594!GO:0032508;DNA duplex unwinding;0.000321299839834203!GO:0032392;DNA geometric change;0.000321299839834203!GO:0007052;mitotic spindle organization and biogenesis;0.000344748595386938!GO:0046483;heterocycle metabolic process;0.000348766961523447!GO:0000139;Golgi membrane;0.000349196672012643!GO:0009165;nucleotide biosynthetic process;0.00035352438664448!GO:0003713;transcription coactivator activity;0.000362549787995557!GO:0008250;oligosaccharyl transferase complex;0.000367592650899092!GO:0004674;protein serine/threonine kinase activity;0.000385918984798197!GO:0003678;DNA helicase activity;0.000406216353969186!GO:0046474;glycerophospholipid biosynthetic process;0.000425641569319505!GO:0048519;negative regulation of biological process;0.000429055423642032!GO:0031982;vesicle;0.000437698606963726!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000448785086871991!GO:0008186;RNA-dependent ATPase activity;0.000449775565262901!GO:0009892;negative regulation of metabolic process;0.000501906247796638!GO:0006626;protein targeting to mitochondrion;0.000506572616064141!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000525062266533824!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000525902318340756!GO:0004576;oligosaccharyl transferase activity;0.000584759435640484!GO:0032561;guanyl ribonucleotide binding;0.000603411073446546!GO:0019001;guanyl nucleotide binding;0.000603411073446546!GO:0006268;DNA unwinding during replication;0.000630857529402675!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00063499776771675!GO:0004298;threonine endopeptidase activity;0.000635340770059273!GO:0006270;DNA replication initiation;0.000655289428795243!GO:0005637;nuclear inner membrane;0.000670759084522964!GO:0016126;sterol biosynthetic process;0.000671681058409347!GO:0000049;tRNA binding;0.000702272762242602!GO:0006401;RNA catabolic process;0.000703588621467484!GO:0030867;rough endoplasmic reticulum membrane;0.00071268856860425!GO:0031410;cytoplasmic vesicle;0.000721115988525973!GO:0006310;DNA recombination;0.000731522785580597!GO:0051920;peroxiredoxin activity;0.000751886663906045!GO:0005684;U2-dependent spliceosome;0.00077549521749203!GO:0006414;translational elongation;0.000787058974542107!GO:0006730;one-carbon compound metabolic process;0.000796542294008584!GO:0016251;general RNA polymerase II transcription factor activity;0.000800812562282406!GO:0009112;nucleobase metabolic process;0.000828612682610659!GO:0006091;generation of precursor metabolites and energy;0.000845902169770703!GO:0003714;transcription corepressor activity;0.00088517078722907!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000903845856516918!GO:0005905;coated pit;0.000949499465767926!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000971657263655728!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000971657263655728!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000971657263655728!GO:0032259;methylation;0.00104643595017138!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00110400922979768!GO:0043069;negative regulation of programmed cell death;0.00116612225505639!GO:0006695;cholesterol biosynthetic process;0.00116791111877993!GO:0006144;purine base metabolic process;0.00117784499399084!GO:0006916;anti-apoptosis;0.00117784499399084!GO:0019752;carboxylic acid metabolic process;0.00126871148275807!GO:0016491;oxidoreductase activity;0.00127819564570361!GO:0004004;ATP-dependent RNA helicase activity;0.00132260871572949!GO:0006338;chromatin remodeling;0.00132731454905858!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00133237326816926!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00133237326816926!GO:0016563;transcription activator activity;0.00135538107261856!GO:0006082;organic acid metabolic process;0.00138173563311176!GO:0006595;polyamine metabolic process;0.00139442168206453!GO:0007264;small GTPase mediated signal transduction;0.00141588131097807!GO:0030521;androgen receptor signaling pathway;0.00149181692183309!GO:0043066;negative regulation of apoptosis;0.00155354873071662!GO:0010468;regulation of gene expression;0.00155799221652241!GO:0006405;RNA export from nucleus;0.00166959559689148!GO:0006519;amino acid and derivative metabolic process;0.00167742704360617!GO:0000082;G1/S transition of mitotic cell cycle;0.00172533447728209!GO:0005876;spindle microtubule;0.00178757409052042!GO:0016481;negative regulation of transcription;0.00182971046720807!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00193128787654196!GO:0008652;amino acid biosynthetic process;0.00201210155178261!GO:0030658;transport vesicle membrane;0.00204838744293545!GO:0018196;peptidyl-asparagine modification;0.00204951174981828!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00204951174981828!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00207091635432732!GO:0031968;organelle outer membrane;0.00209365061244291!GO:0030118;clathrin coat;0.00210118828503852!GO:0051087;chaperone binding;0.00216304153705319!GO:0005048;signal sequence binding;0.00219035178656654!GO:0051252;regulation of RNA metabolic process;0.00221987949561976!GO:0008022;protein C-terminus binding;0.00223521722395258!GO:0046467;membrane lipid biosynthetic process;0.00228375840326491!GO:0048471;perinuclear region of cytoplasm;0.00244405274798602!GO:0030036;actin cytoskeleton organization and biogenesis;0.00244405274798602!GO:0042802;identical protein binding;0.00245858756102561!GO:0030027;lamellipodium;0.00250219736738577!GO:0019867;outer membrane;0.00251355436745365!GO:0005885;Arp2/3 protein complex;0.00263737401212708!GO:0005741;mitochondrial outer membrane;0.00271459828642669!GO:0048500;signal recognition particle;0.00273900030863323!GO:0006284;base-excision repair;0.00273900030863323!GO:0048487;beta-tubulin binding;0.00281493802212081!GO:0032774;RNA biosynthetic process;0.00283060769707965!GO:0043414;biopolymer methylation;0.00285511267089803!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00285808960513171!GO:0000725;recombinational repair;0.00303110219962097!GO:0000724;double-strand break repair via homologous recombination;0.00303110219962097!GO:0000922;spindle pole;0.00303110219962097!GO:0031072;heat shock protein binding;0.0030509060966841!GO:0009116;nucleoside metabolic process;0.00324921270714279!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00333419479263721!GO:0043067;regulation of programmed cell death;0.00333419479263721!GO:0030133;transport vesicle;0.00333419479263721!GO:0031570;DNA integrity checkpoint;0.00337130695357253!GO:0042981;regulation of apoptosis;0.00340378481492824!GO:0006351;transcription, DNA-dependent;0.00341581652207968!GO:0000209;protein polyubiquitination;0.00349406302532608!GO:0004722;protein serine/threonine phosphatase activity;0.00349528719722185!GO:0019843;rRNA binding;0.00350343383223422!GO:0009081;branched chain family amino acid metabolic process;0.00352771745035136!GO:0016044;membrane organization and biogenesis;0.00354584350581102!GO:0016564;transcription repressor activity;0.00380778117115177!GO:0015992;proton transport;0.00380812743338771!GO:0006818;hydrogen transport;0.00386439089323997!GO:0033116;ER-Golgi intermediate compartment membrane;0.00387904503117778!GO:0006275;regulation of DNA replication;0.00387904503117778!GO:0030660;Golgi-associated vesicle membrane;0.00416015079520873!GO:0051539;4 iron, 4 sulfur cluster binding;0.00434542226385728!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0044171075317606!GO:0030663;COPI coated vesicle membrane;0.00456285430076193!GO:0030126;COPI vesicle coat;0.00456285430076193!GO:0003677;DNA binding;0.00459715288384338!GO:0040029;regulation of gene expression, epigenetic;0.00466421431119341!GO:0000792;heterochromatin;0.00471751895995655!GO:0032200;telomere organization and biogenesis;0.00475022974939469!GO:0000723;telomere maintenance;0.00475022974939469!GO:0043488;regulation of mRNA stability;0.00475022974939469!GO:0043487;regulation of RNA stability;0.00475022974939469!GO:0008312;7S RNA binding;0.00476965483300291!GO:0004527;exonuclease activity;0.00479980898687434!GO:0030145;manganese ion binding;0.0048964812097361!GO:0030119;AP-type membrane coat adaptor complex;0.00490083301859694!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00490709810196094!GO:0005669;transcription factor TFIID complex;0.00495285043129686!GO:0035258;steroid hormone receptor binding;0.00501001679955206!GO:0005758;mitochondrial intermembrane space;0.00510526589434799!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00526465622698479!GO:0003711;transcription elongation regulator activity;0.00526465622698479!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00562508538098623!GO:0045047;protein targeting to ER;0.00562508538098623!GO:0031124;mRNA 3'-end processing;0.0058213607416589!GO:0000339;RNA cap binding;0.00587127080610306!GO:0043596;nuclear replication fork;0.00587127080610306!GO:0046489;phosphoinositide biosynthetic process;0.00609139833870828!GO:0044262;cellular carbohydrate metabolic process;0.00609698050359383!GO:0043284;biopolymer biosynthetic process;0.00618174189698056!GO:0016272;prefoldin complex;0.00618308195060835!GO:0043624;cellular protein complex disassembly;0.00618982164382913!GO:0006289;nucleotide-excision repair;0.0063518124391736!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0063518124391736!GO:0016584;nucleosome positioning;0.00647622192263921!GO:0030134;ER to Golgi transport vesicle;0.00652428123945546!GO:0006007;glucose catabolic process;0.00663469296361181!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00673664992293495!GO:0015399;primary active transmembrane transporter activity;0.00673664992293495!GO:0030029;actin filament-based process;0.00676747339852338!GO:0000228;nuclear chromosome;0.00686556576003986!GO:0008180;signalosome;0.00687994907683377!GO:0030132;clathrin coat of coated pit;0.00690607288964809!GO:0065007;biological regulation;0.00748012711343957!GO:0006650;glycerophospholipid metabolic process;0.00762344809372773!GO:0008610;lipid biosynthetic process;0.00762344809372773!GO:0016791;phosphoric monoester hydrolase activity;0.00797710977798322!GO:0000096;sulfur amino acid metabolic process;0.00807577652060909!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00829772468014471!GO:0043022;ribosome binding;0.00839996374207723!GO:0032984;macromolecular complex disassembly;0.0084240165632645!GO:0006891;intra-Golgi vesicle-mediated transport;0.0084240165632645!GO:0051789;response to protein stimulus;0.00847528580561716!GO:0006986;response to unfolded protein;0.00847528580561716!GO:0005832;chaperonin-containing T-complex;0.00847528580561716!GO:0006611;protein export from nucleus;0.00874485363818235!GO:0030131;clathrin adaptor complex;0.00880108789058115!GO:0031577;spindle checkpoint;0.00892995371591177!GO:0008287;protein serine/threonine phosphatase complex;0.00896954579893782!GO:0006378;mRNA polyadenylation;0.00929761639946357!GO:0042393;histone binding;0.0097389616796082!GO:0050662;coenzyme binding;0.0097389616796082!GO:0000118;histone deacetylase complex;0.00974807354347387!GO:0051540;metal cluster binding;0.00984198556290166!GO:0051536;iron-sulfur cluster binding;0.00984198556290166!GO:0031970;organelle envelope lumen;0.0102374567009486!GO:0030518;steroid hormone receptor signaling pathway;0.0104400177357238!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0106534340007125!GO:0003746;translation elongation factor activity;0.0106824221129895!GO:0030127;COPII vesicle coat;0.0108230949802078!GO:0012507;ER to Golgi transport vesicle membrane;0.0108230949802078!GO:0000178;exosome (RNase complex);0.0110775080341216!GO:0007021;tubulin folding;0.0111726008252797!GO:0019783;small conjugating protein-specific protease activity;0.0114848467653331!GO:0005773;vacuole;0.0114859648198227!GO:0043241;protein complex disassembly;0.0115419935661947!GO:0030137;COPI-coated vesicle;0.0119225961200387!GO:0016197;endosome transport;0.0121934340176136!GO:0016301;kinase activity;0.012409785779256!GO:0017166;vinculin binding;0.0125533896939727!GO:0000070;mitotic sister chromatid segregation;0.0126190662340566!GO:0031902;late endosome membrane;0.0128191813855988!GO:0030176;integral to endoplasmic reticulum membrane;0.0128409576492438!GO:0009451;RNA modification;0.0130734746979822!GO:0042158;lipoprotein biosynthetic process;0.0132901847041288!GO:0000819;sister chromatid segregation;0.0133349495402172!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0135309232066516!GO:0009308;amine metabolic process;0.0135309232066516!GO:0065009;regulation of a molecular function;0.0135692368968145!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0138207945232499!GO:0000077;DNA damage checkpoint;0.013932208653467!GO:0051053;negative regulation of DNA metabolic process;0.0140982734921091!GO:0030496;midbody;0.0141040085318629!GO:0005875;microtubule associated complex;0.0141219755275079!GO:0005791;rough endoplasmic reticulum;0.01434238745366!GO:0022890;inorganic cation transmembrane transporter activity;0.0146220904317552!GO:0048037;cofactor binding;0.0148947383736582!GO:0046128;purine ribonucleoside metabolic process;0.0149908607230959!GO:0042278;purine nucleoside metabolic process;0.0149908607230959!GO:0004003;ATP-dependent DNA helicase activity;0.0149908607230959!GO:0042770;DNA damage response, signal transduction;0.0151699864746101!GO:0045045;secretory pathway;0.0155074308030655!GO:0004843;ubiquitin-specific protease activity;0.0155074308030655!GO:0016407;acetyltransferase activity;0.0157557866074202!GO:0008139;nuclear localization sequence binding;0.0157858518962218!GO:0016311;dephosphorylation;0.0158878962480439!GO:0006497;protein amino acid lipidation;0.0161705891234372!GO:0008361;regulation of cell size;0.0161855125421121!GO:0043130;ubiquitin binding;0.0163455314267427!GO:0032182;small conjugating protein binding;0.0163455314267427!GO:0000781;chromosome, telomeric region;0.0163666895827409!GO:0006892;post-Golgi vesicle-mediated transport;0.017011507510706!GO:0035267;NuA4 histone acetyltransferase complex;0.0171129773695332!GO:0022411;cellular component disassembly;0.0171651468313908!GO:0009066;aspartate family amino acid metabolic process;0.0174980176432151!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0176435780625198!GO:0015002;heme-copper terminal oxidase activity;0.0176435780625198!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0176435780625198!GO:0004129;cytochrome-c oxidase activity;0.0176435780625198!GO:0007050;cell cycle arrest;0.0177269503573244!GO:0008276;protein methyltransferase activity;0.0180833160396423!GO:0006400;tRNA modification;0.0181139341678162!GO:0046112;nucleobase biosynthetic process;0.0181318064820432!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.018133531063869!GO:0031901;early endosome membrane;0.018261448827383!GO:0009303;rRNA transcription;0.0184742218438479!GO:0031123;RNA 3'-end processing;0.0185235143732756!GO:0009064;glutamine family amino acid metabolic process;0.0185437941023779!GO:0045449;regulation of transcription;0.0185512111596611!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0188167976344798!GO:0016408;C-acyltransferase activity;0.0190500996552091!GO:0045892;negative regulation of transcription, DNA-dependent;0.0192356247361429!GO:0043601;nuclear replisome;0.019389846066185!GO:0030894;replisome;0.019389846066185!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0195654366331159!GO:0001726;ruffle;0.0201262021824642!GO:0004221;ubiquitin thiolesterase activity;0.0203365118918153!GO:0030384;phosphoinositide metabolic process;0.020824471812299!GO:0046365;monosaccharide catabolic process;0.021214528892411!GO:0006740;NADPH regeneration;0.0217621691726102!GO:0006098;pentose-phosphate shunt;0.0217621691726102!GO:0005663;DNA replication factor C complex;0.0217621691726102!GO:0051287;NAD binding;0.0217621691726102!GO:0003756;protein disulfide isomerase activity;0.0217621691726102!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0217621691726102!GO:0043189;H4/H2A histone acetyltransferase complex;0.0219128314493508!GO:0031371;ubiquitin conjugating enzyme complex;0.0226431252577352!GO:0009113;purine base biosynthetic process;0.0228623859720123!GO:0000910;cytokinesis;0.0229015778009201!GO:0030659;cytoplasmic vesicle membrane;0.0235095216464754!GO:0004659;prenyltransferase activity;0.0236957595986071!GO:0004518;nuclease activity;0.0243541825126117!GO:0000152;nuclear ubiquitin ligase complex;0.024413330230902!GO:0006220;pyrimidine nucleotide metabolic process;0.024413330230902!GO:0000726;non-recombinational repair;0.024440238179548!GO:0000159;protein phosphatase type 2A complex;0.0249679324761169!GO:0008017;microtubule binding;0.025616815187644!GO:0016049;cell growth;0.0256836261645278!GO:0006376;mRNA splice site selection;0.0256954604343974!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0256954604343974!GO:0000323;lytic vacuole;0.0257854702650009!GO:0005764;lysosome;0.0257854702650009!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0259075839812465!GO:0016125;sterol metabolic process;0.0259165871238494!GO:0008097;5S rRNA binding;0.0261735402703032!GO:0030125;clathrin vesicle coat;0.0261992814983049!GO:0030665;clathrin coated vesicle membrane;0.0261992814983049!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0262092471737118!GO:0005862;muscle thin filament tropomyosin;0.0269537342529385!GO:0044450;microtubule organizing center part;0.0271953946446455!GO:0046966;thyroid hormone receptor binding;0.0275619528507809!GO:0008601;protein phosphatase type 2A regulator activity;0.0280014337576666!GO:0006596;polyamine biosynthetic process;0.0285588020308656!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0286321104709278!GO:0005784;translocon complex;0.0294796339282223!GO:0016790;thiolester hydrolase activity;0.0301165703213229!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0301165703213229!GO:0010257;NADH dehydrogenase complex assembly;0.0301165703213229!GO:0033108;mitochondrial respiratory chain complex assembly;0.0301165703213229!GO:0017134;fibroblast growth factor binding;0.0301938398135087!GO:0008536;Ran GTPase binding;0.0306533591303872!GO:0005869;dynactin complex;0.0310494212233833!GO:0000097;sulfur amino acid biosynthetic process;0.0322838862932002!GO:0019320;hexose catabolic process;0.0326376102914366!GO:0005856;cytoskeleton;0.0329676852988951!GO:0009083;branched chain family amino acid catabolic process;0.0329833413715844!GO:0044454;nuclear chromosome part;0.033066203610809!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.033218226736512!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0333474802555203!GO:0009067;aspartate family amino acid biosynthetic process;0.0345966844831519!GO:0016835;carbon-oxygen lyase activity;0.0346400206928894!GO:0007346;regulation of progression through mitotic cell cycle;0.0350397563503141!GO:0007004;telomere maintenance via telomerase;0.0350800726964292!GO:0000123;histone acetyltransferase complex;0.0352520697539186!GO:0009124;nucleoside monophosphate biosynthetic process;0.0353737367899305!GO:0009123;nucleoside monophosphate metabolic process;0.0353737367899305!GO:0004721;phosphoprotein phosphatase activity;0.0355015348434417!GO:0030911;TPR domain binding;0.0355015348434417!GO:0008320;protein transmembrane transporter activity;0.0355015348434417!GO:0009119;ribonucleoside metabolic process;0.0357978277147249!GO:0006807;nitrogen compound metabolic process;0.0358268852596574!GO:0046164;alcohol catabolic process;0.0358787557245809!GO:0050178;phenylpyruvate tautomerase activity;0.0360844763790263!GO:0012506;vesicle membrane;0.0361569499550218!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0364966289430555!GO:0004532;exoribonuclease activity;0.0366868749691335!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0366868749691335!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0371709568953665!GO:0045039;protein import into mitochondrial inner membrane;0.0371709568953665!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0374321639165166!GO:0005652;nuclear lamina;0.0376952795238345!GO:0004239;methionyl aminopeptidase activity;0.0378735223446821!GO:0006096;glycolysis;0.038245212952189!GO:0044433;cytoplasmic vesicle part;0.0382971718957577!GO:0007040;lysosome organization and biogenesis;0.0387226902708983!GO:0009396;folic acid and derivative biosynthetic process;0.0399754452117709!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0403489830943088!GO:0043492;ATPase activity, coupled to movement of substances;0.0418094639400642!GO:0005996;monosaccharide metabolic process;0.0418731078281175!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0418731078281175!GO:0008538;proteasome activator activity;0.0418731078281175!GO:0045947;negative regulation of translational initiation;0.0423200847392246!GO:0016417;S-acyltransferase activity;0.0424614295892178!GO:0008156;negative regulation of DNA replication;0.0424959542699856!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0428862902827566!GO:0043631;RNA polyadenylation;0.0433086909048926!GO:0005666;DNA-directed RNA polymerase III complex;0.0433086909048926!GO:0030522;intracellular receptor-mediated signaling pathway;0.0433598737630227!GO:0006360;transcription from RNA polymerase I promoter;0.0441985223348846!GO:0022884;macromolecule transmembrane transporter activity;0.0444710922822805!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0444710922822805!GO:0006672;ceramide metabolic process;0.0448403344706555!GO:0016585;chromatin remodeling complex;0.0449812654453835!GO:0006607;NLS-bearing substrate import into nucleus;0.0449812654453835!GO:0007265;Ras protein signal transduction;0.0466420972852379!GO:0006266;DNA ligation;0.047825673556345!GO:0050681;androgen receptor binding;0.047825673556345!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0481461964938207!GO:0022406;membrane docking;0.0485845689726826!GO:0048278;vesicle docking;0.0485845689726826!GO:0005680;anaphase-promoting complex;0.0493031212979521!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0493031212979521!GO:0045893;positive regulation of transcription, DNA-dependent;0.0494237664808626!GO:0019318;hexose metabolic process;0.0495905523850871!GO:0006610;ribosomal protein import into nucleus;0.0495926478826792!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0498803954528567 | |||
|sample_id=10807 | |sample_id=10807 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=ovary | |sample_tissue=ovary | ||
|top_motifs=OCT4_SOX2{dimer}:2.69910673111;GFI1:1.88333612329;PBX1:1.87246816369;TFDP1:1.77369579521;NFY{A,B,C}:1.55037134511;VSX1,2:1.47358043316;POU2F1..3:1.44558522268;RBPJ:1.37512855791;SOX{8,9,10}:1.35009472958;ONECUT1,2:1.27596273379;E2F1..5:1.22884197522;TOPORS:1.19400558586;CDX1,2,4:1.15889205593;T:1.13893432649;ALX1:1.10196035272;ZNF143:1.0672418448;PITX1..3:1.02502158297;SOX17:1.0094150044;FOX{I1,J2}:0.999907858953;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.962383315256;PAX8:0.93615416275;AIRE:0.865346109135;PAX4:0.864482170022;POU1F1:0.832577266037;FOXP1:0.830887492426;HOX{A6,A7,B6,B7}:0.830552190848;ZBTB16:0.791710329087;NKX2-3_NKX2-5:0.778869339685;MYB:0.776431642505;CUX2:0.773401635857;SP1:0.754358691194;HOX{A4,D4}:0.749135803959;EVI1:0.722572693234;BREu{core}:0.722056118826;FOXQ1:0.718207361387;KLF4:0.706334253331;NRF1:0.703651561997;NANOG:0.693616652579;POU5F1:0.686160982503;HOX{A5,B5}:0.631054887987;IKZF2:0.622697786468;CDC5L:0.598057636274;SOX2:0.561670109718;STAT5{A,B}:0.56155265963;MZF1:0.559855400737;YY1:0.555297653863;LEF1_TCF7_TCF7L1,2:0.511007618179;TEF:0.509004008494;ZNF384:0.480119216378;RORA:0.467238044043;POU3F1..4:0.44680429269;FOXD3:0.44377126008;CRX:0.438836159266;ELK1,4_GABP{A,B1}:0.433242562603;NKX2-1,4:0.373243898928;FOXM1:0.367094539872;PAX1,9:0.328039706362;FOXA2:0.321487343456;GATA4:0.312107578917;MYBL2:0.310467619011;ZFP161:0.307723101244;NKX6-1,2:0.279588355893;GATA6:0.276947792903;XCPE1{core}:0.270352282372;ATF4:0.257164329052;IKZF1:0.255840128895;ADNP_IRX_SIX_ZHX:0.242948428729;CREB1:0.201186816083;UFEwm:0.173744089131;FOXP3:0.152176538436;PATZ1:0.148049308742;HNF4A_NR2F1,2:0.125209067856;HIC1:0.122088087088;TEAD1:0.108470675422;MYOD1:0.0679217666924;HMGA1,2:0.0589023743784;ARID5B:0.0529352792964;SNAI1..3:0.0332050865845;FOXL1:0.0231346372752;TFAP2B:0.0220950667379;ESRRA:0.019455807515;GFI1B:0.0129060260906;PAX3,7:0.0072697902147;LHX3,4:0.00155502611338;RFX1:-0.00387166652716;EN1,2:-0.0302335784679;TP53:-0.03223832428;GTF2I:-0.0395842155219;NR3C1:-0.0529513842336;NKX3-1:-0.0590794952637;PRRX1,2:-0.0592853114557;GCM1,2:-0.0627327164005;ZBTB6:-0.066465267121;MYFfamily:-0.06896611875;MED-1{core}:-0.0789993790452;NFIX:-0.0988868510862;HAND1,2:-0.111953916118;MAZ:-0.112409121595;LMO2:-0.11459767309;NANOG{mouse}:-0.124139022416;MTF1:-0.124880183403;MEF2{A,B,C,D}:-0.163560270499;FOXO1,3,4:-0.171010504828;REST:-0.176912436137;bHLH_family:-0.179501277918;ZNF148:-0.185246741212;HNF1A:-0.190995517432;ZIC1..3:-0.192767436645;NR1H4:-0.207917806615;MTE{core}:-0.214766265432;NKX3-2:-0.215253553899;HOXA9_MEIS1:-0.220241935829;EBF1:-0.252521496301;ATF2:-0.261579417795;DBP:-0.263646615834;SOX5:-0.277344797822;BACH2:-0.279219077371;STAT1,3:-0.281395251787;GTF2A1,2:-0.285867654488;NKX2-2,8:-0.293794366454;TBP:-0.30352076483;FOX{F1,F2,J1}:-0.30396090036;POU6F1:-0.306108584235;EGR1..3:-0.32714053351;HSF1,2:-0.331175400451;PPARG:-0.343593796667;TFAP2{A,C}:-0.370370052219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381159229764;ZEB1:-0.386948769184;RXR{A,B,G}:-0.390388701319;SREBF1,2:-0.395937306891;HBP1_HMGB_SSRP1_UBTF:-0.401332895646;NFKB1_REL_RELA:-0.408453405769;PDX1:-0.412746078737;FOS_FOS{B,L1}_JUN{B,D}:-0.413220900128;ALX4:-0.417570645829;AHR_ARNT_ARNT2:-0.418723668091;NFE2:-0.427522585436;PRDM1:-0.428805887921;PAX5:-0.429225029529;AR:-0.429945904975;HLF:-0.436599091263;XBP1:-0.438162527392;NFE2L2:-0.451775318197;TFAP4:-0.459061124592;TBX4,5:-0.475723656169;FOXN1:-0.480525501342;SPI1:-0.488654359245;SPIB:-0.521989250288;HIF1A:-0.540945941736;RREB1:-0.555195626673;ELF1,2,4:-0.564957081557;ATF5_CREB3:-0.572486230154;FOSL2:-0.580106952513;SRF:-0.603071977242;TFCP2:-0.624719275027;JUN:-0.62786554718;PAX2:-0.628973877083;RUNX1..3:-0.642515283581;NFE2L1:-0.645833322174;PAX6:-0.649473130877;TGIF1:-0.655296800996;DMAP1_NCOR{1,2}_SMARC:-0.673369658295;RFX2..5_RFXANK_RFXAP:-0.675598789978;NFIL3:-0.686498929605;IRF7:-0.705798185455;GZF1:-0.706828115013;NHLH1,2:-0.715162298952;NR5A1,2:-0.723901660396;CEBPA,B_DDIT3:-0.74312860756;HES1:-0.835362774203;SPZ1:-0.858579749579;ETS1,2:-0.868911314582;BPTF:-0.888949096916;TLX1..3_NFIC{dimer}:-0.910333760046;NFATC1..3:-0.923874206107;FOX{D1,D2}:-0.93035411242;ZNF238:-1.01491809023;TAL1_TCF{3,4,12}:-1.03037511065;STAT2,4,6:-1.05250915503;IRF1,2:-1.14044226767;SMAD1..7,9:-1.14254597918;HMX1:-1.14351652329;ESR1:-1.16185028856;EP300:-1.17573983264;RXRA_VDR{dimer}:-1.25961834563;MAFB:-1.28636147291;TLX2:-1.32622997843;NR6A1:-1.36378560083;ATF6:-1.4668839134;ZNF423:-1.50128844219;GLI1..3:-1.7736787806 | |top_motifs=OCT4_SOX2{dimer}:2.69910673111;GFI1:1.88333612329;PBX1:1.87246816369;TFDP1:1.77369579521;NFY{A,B,C}:1.55037134511;VSX1,2:1.47358043316;POU2F1..3:1.44558522268;RBPJ:1.37512855791;SOX{8,9,10}:1.35009472958;ONECUT1,2:1.27596273379;E2F1..5:1.22884197522;TOPORS:1.19400558586;CDX1,2,4:1.15889205593;T:1.13893432649;ALX1:1.10196035272;ZNF143:1.0672418448;PITX1..3:1.02502158297;SOX17:1.0094150044;FOX{I1,J2}:0.999907858953;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.962383315256;PAX8:0.93615416275;AIRE:0.865346109135;PAX4:0.864482170022;POU1F1:0.832577266037;FOXP1:0.830887492426;HOX{A6,A7,B6,B7}:0.830552190848;ZBTB16:0.791710329087;NKX2-3_NKX2-5:0.778869339685;MYB:0.776431642505;CUX2:0.773401635857;SP1:0.754358691194;HOX{A4,D4}:0.749135803959;EVI1:0.722572693234;BREu{core}:0.722056118826;FOXQ1:0.718207361387;KLF4:0.706334253331;NRF1:0.703651561997;NANOG:0.693616652579;POU5F1:0.686160982503;HOX{A5,B5}:0.631054887987;IKZF2:0.622697786468;CDC5L:0.598057636274;SOX2:0.561670109718;STAT5{A,B}:0.56155265963;MZF1:0.559855400737;YY1:0.555297653863;LEF1_TCF7_TCF7L1,2:0.511007618179;TEF:0.509004008494;ZNF384:0.480119216378;RORA:0.467238044043;POU3F1..4:0.44680429269;FOXD3:0.44377126008;CRX:0.438836159266;ELK1,4_GABP{A,B1}:0.433242562603;NKX2-1,4:0.373243898928;FOXM1:0.367094539872;PAX1,9:0.328039706362;FOXA2:0.321487343456;GATA4:0.312107578917;MYBL2:0.310467619011;ZFP161:0.307723101244;NKX6-1,2:0.279588355893;GATA6:0.276947792903;XCPE1{core}:0.270352282372;ATF4:0.257164329052;IKZF1:0.255840128895;ADNP_IRX_SIX_ZHX:0.242948428729;CREB1:0.201186816083;UFEwm:0.173744089131;FOXP3:0.152176538436;PATZ1:0.148049308742;HNF4A_NR2F1,2:0.125209067856;HIC1:0.122088087088;TEAD1:0.108470675422;MYOD1:0.0679217666924;HMGA1,2:0.0589023743784;ARID5B:0.0529352792964;SNAI1..3:0.0332050865845;FOXL1:0.0231346372752;TFAP2B:0.0220950667379;ESRRA:0.019455807515;GFI1B:0.0129060260906;PAX3,7:0.0072697902147;LHX3,4:0.00155502611338;RFX1:-0.00387166652716;EN1,2:-0.0302335784679;TP53:-0.03223832428;GTF2I:-0.0395842155219;NR3C1:-0.0529513842336;NKX3-1:-0.0590794952637;PRRX1,2:-0.0592853114557;GCM1,2:-0.0627327164005;ZBTB6:-0.066465267121;MYFfamily:-0.06896611875;MED-1{core}:-0.0789993790452;NFIX:-0.0988868510862;HAND1,2:-0.111953916118;MAZ:-0.112409121595;LMO2:-0.11459767309;NANOG{mouse}:-0.124139022416;MTF1:-0.124880183403;MEF2{A,B,C,D}:-0.163560270499;FOXO1,3,4:-0.171010504828;REST:-0.176912436137;bHLH_family:-0.179501277918;ZNF148:-0.185246741212;HNF1A:-0.190995517432;ZIC1..3:-0.192767436645;NR1H4:-0.207917806615;MTE{core}:-0.214766265432;NKX3-2:-0.215253553899;HOXA9_MEIS1:-0.220241935829;EBF1:-0.252521496301;ATF2:-0.261579417795;DBP:-0.263646615834;SOX5:-0.277344797822;BACH2:-0.279219077371;STAT1,3:-0.281395251787;GTF2A1,2:-0.285867654488;NKX2-2,8:-0.293794366454;TBP:-0.30352076483;FOX{F1,F2,J1}:-0.30396090036;POU6F1:-0.306108584235;EGR1..3:-0.32714053351;HSF1,2:-0.331175400451;PPARG:-0.343593796667;TFAP2{A,C}:-0.370370052219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381159229764;ZEB1:-0.386948769184;RXR{A,B,G}:-0.390388701319;SREBF1,2:-0.395937306891;HBP1_HMGB_SSRP1_UBTF:-0.401332895646;NFKB1_REL_RELA:-0.408453405769;PDX1:-0.412746078737;FOS_FOS{B,L1}_JUN{B,D}:-0.413220900128;ALX4:-0.417570645829;AHR_ARNT_ARNT2:-0.418723668091;NFE2:-0.427522585436;PRDM1:-0.428805887921;PAX5:-0.429225029529;AR:-0.429945904975;HLF:-0.436599091263;XBP1:-0.438162527392;NFE2L2:-0.451775318197;TFAP4:-0.459061124592;TBX4,5:-0.475723656169;FOXN1:-0.480525501342;SPI1:-0.488654359245;SPIB:-0.521989250288;HIF1A:-0.540945941736;RREB1:-0.555195626673;ELF1,2,4:-0.564957081557;ATF5_CREB3:-0.572486230154;FOSL2:-0.580106952513;SRF:-0.603071977242;TFCP2:-0.624719275027;JUN:-0.62786554718;PAX2:-0.628973877083;RUNX1..3:-0.642515283581;NFE2L1:-0.645833322174;PAX6:-0.649473130877;TGIF1:-0.655296800996;DMAP1_NCOR{1,2}_SMARC:-0.673369658295;RFX2..5_RFXANK_RFXAP:-0.675598789978;NFIL3:-0.686498929605;IRF7:-0.705798185455;GZF1:-0.706828115013;NHLH1,2:-0.715162298952;NR5A1,2:-0.723901660396;CEBPA,B_DDIT3:-0.74312860756;HES1:-0.835362774203;SPZ1:-0.858579749579;ETS1,2:-0.868911314582;BPTF:-0.888949096916;TLX1..3_NFIC{dimer}:-0.910333760046;NFATC1..3:-0.923874206107;FOX{D1,D2}:-0.93035411242;ZNF238:-1.01491809023;TAL1_TCF{3,4,12}:-1.03037511065;STAT2,4,6:-1.05250915503;IRF1,2:-1.14044226767;SMAD1..7,9:-1.14254597918;HMX1:-1.14351652329;ESR1:-1.16185028856;EP300:-1.17573983264;RXRA_VDR{dimer}:-1.25961834563;MAFB:-1.28636147291;TLX2:-1.32622997843;NR6A1:-1.36378560083;ATF6:-1.4668839134;ZNF423:-1.50128844219;GLI1..3:-1.7736787806 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10807-111A6;search_select_hide=table117:FF:10807-111A6 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | teratocarcinoma cell line:PA-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11890 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11890
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11890
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.397 |
| 10 | 10 | 0.288 |
| 100 | 100 | 0.644 |
| 101 | 101 | 0.752 |
| 102 | 102 | 0.671 |
| 103 | 103 | 0.162 |
| 104 | 104 | 0.56 |
| 105 | 105 | 0.256 |
| 106 | 106 | 0.0209 |
| 107 | 107 | 0.752 |
| 108 | 108 | 0.893 |
| 109 | 109 | 0.166 |
| 11 | 11 | 0.269 |
| 110 | 110 | 0.496 |
| 111 | 111 | 0.827 |
| 112 | 112 | 0.00405 |
| 113 | 113 | 0.0748 |
| 114 | 114 | 0.0693 |
| 115 | 115 | 0.874 |
| 116 | 116 | 0.863 |
| 117 | 117 | 0.306 |
| 118 | 118 | 0.851 |
| 119 | 119 | 0.402 |
| 12 | 12 | 0.625 |
| 120 | 120 | 0.632 |
| 121 | 121 | 0.502 |
| 122 | 122 | 0.427 |
| 123 | 123 | 0.542 |
| 124 | 124 | 0.735 |
| 125 | 125 | 0.337 |
| 126 | 126 | 0.675 |
| 127 | 127 | 0.156 |
| 128 | 128 | 0.324 |
| 129 | 129 | 0.325 |
| 13 | 13 | 0.69 |
| 130 | 130 | 0.151 |
| 131 | 131 | 0.604 |
| 132 | 132 | 0.945 |
| 133 | 133 | 0.0776 |
| 134 | 134 | 0.475 |
| 135 | 135 | 0.0255 |
| 136 | 136 | 0.0294 |
| 137 | 137 | 0.126 |
| 138 | 138 | 0.404 |
| 139 | 139 | 0.04 |
| 14 | 14 | 0.738 |
| 140 | 140 | 0.846 |
| 141 | 141 | 0.696 |
| 142 | 142 | 0.731 |
| 143 | 143 | 0.184 |
| 144 | 144 | 0.814 |
| 145 | 145 | 0.748 |
| 146 | 146 | 0.489 |
| 147 | 147 | 0.288 |
| 148 | 148 | 0.0128 |
| 149 | 149 | 0.0226 |
| 15 | 15 | 0.303 |
| 150 | 150 | 0.824 |
| 151 | 151 | 0.11 |
| 152 | 152 | 0.255 |
| 153 | 153 | 0.254 |
| 154 | 154 | 0.927 |
| 155 | 155 | 0.913 |
| 156 | 156 | 0.851 |
| 157 | 157 | 0.826 |
| 158 | 158 | 0.149 |
| 159 | 159 | 0.396 |
| 16 | 16 | 0.292 |
| 160 | 160 | 0.118 |
| 161 | 161 | 0.42 |
| 162 | 162 | 0.382 |
| 163 | 163 | 0.464 |
| 164 | 164 | 0.108 |
| 165 | 165 | 0.297 |
| 166 | 166 | 0.569 |
| 167 | 167 | 0.884 |
| 168 | 168 | 0.466 |
| 169 | 169 | 0.0464 |
| 17 | 17 | 0.234 |
| 18 | 18 | 0.21 |
| 19 | 19 | 0.259 |
| 2 | 2 | 0.203 |
| 20 | 20 | 0.631 |
| 21 | 21 | 0.915 |
| 22 | 22 | 0.118 |
| 23 | 23 | 0.0206 |
| 24 | 24 | 0.573 |
| 25 | 25 | 0.355 |
| 26 | 26 | 0.975 |
| 27 | 27 | 0.0461 |
| 28 | 28 | 0.704 |
| 29 | 29 | 0.536 |
| 3 | 3 | 0.288 |
| 30 | 30 | 0.579 |
| 31 | 31 | 0.506 |
| 32 | 32 | 0.00963 |
| 33 | 33 | 0.86 |
| 34 | 34 | 0.33 |
| 35 | 35 | 0.431 |
| 36 | 36 | 0.128 |
| 37 | 37 | 0.154 |
| 38 | 38 | 0.296 |
| 39 | 39 | 0.515 |
| 4 | 4 | 0.33 |
| 40 | 40 | 0.302 |
| 41 | 41 | 0.245 |
| 42 | 42 | 0.86 |
| 43 | 43 | 0.157 |
| 44 | 44 | 0.999 |
| 45 | 45 | 0.359 |
| 46 | 46 | 0.185 |
| 47 | 47 | 0.896 |
| 48 | 48 | 0.67 |
| 49 | 49 | 0.293 |
| 5 | 5 | 0.403 |
| 50 | 50 | 0.878 |
| 51 | 51 | 0.634 |
| 52 | 52 | 0.455 |
| 53 | 53 | 0.787 |
| 54 | 54 | 0.552 |
| 55 | 55 | 0.0604 |
| 56 | 56 | 0.491 |
| 57 | 57 | 0.693 |
| 58 | 58 | 0.123 |
| 59 | 59 | 0.106 |
| 6 | 6 | 0.534 |
| 60 | 60 | 0.112 |
| 61 | 61 | 0.903 |
| 62 | 62 | 0.0658 |
| 63 | 63 | 0.212 |
| 64 | 64 | 0.586 |
| 65 | 65 | 0.0647 |
| 66 | 66 | 0.00561 |
| 67 | 67 | 0.306 |
| 68 | 68 | 0.389 |
| 69 | 69 | 0.709 |
| 7 | 7 | 0.837 |
| 70 | 70 | 0.0344 |
| 71 | 71 | 0.0535 |
| 72 | 72 | 0.325 |
| 73 | 73 | 0.098 |
| 74 | 74 | 0.633 |
| 75 | 75 | 0.519 |
| 76 | 76 | 0.576 |
| 77 | 77 | 0.0886 |
| 78 | 78 | 0.771 |
| 79 | 79 | 0.173 |
| 8 | 8 | 0.452 |
| 80 | 80 | 0.158 |
| 81 | 81 | 0.56 |
| 82 | 82 | 0.0143 |
| 83 | 83 | 0.916 |
| 84 | 84 | 0.785 |
| 85 | 85 | 0.0337 |
| 86 | 86 | 0.66 |
| 87 | 87 | 0.227 |
| 88 | 88 | 0.452 |
| 89 | 89 | 0.0242 |
| 9 | 9 | 0.0524 |
| 90 | 90 | 0.534 |
| 91 | 91 | 0.153 |
| 92 | 92 | 0.0158 |
| 93 | 93 | 0.879 |
| 94 | 94 | 0.156 |
| 95 | 95 | 0.445 |
| 96 | 96 | 0.178 |
| 97 | 97 | 0.826 |
| 98 | 98 | 0.647 |
| 99 | 99 | 0.909 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11890
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample
FF:0101591 PA-1 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100977 (ovary cell line sample)
0100306 (teratocarcinoma cell line sample)
0100811 (ovary cancer cell line sample)
0101591 (PA-1 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
