FF:10838-111E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004791 | ||
|accession_numbers=CAGE;DRX007928;DRR008800;DRZ000225;DRZ001610 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004791 | ||
|accession_numbers=CAGE;DRX007928;DRR008800;DRZ000225;DRZ001610;DRZ011575;DRZ012960 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057146;DRR062905;DRZ007981 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.82!663.24!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.51!320.69!NEUROG1;;chr19:48325184..48325211,+!p1@CRX!2.37!232.98!CRX;;chr14:57272369..57272391,-!p2@OTX2!2.33!214.03!OTX2;;chr2:162272889..162272915,+!p2@TBR1!2.27!186.63!TBR1;;chr2:162272785..162272836,+!p1@TBR1!2.27!183.73!TBR1;;chr14:29235961..29236008,+!p1@FOXG1!2.26!179.99!FOXG1;;chr2:239148671..239148686,-!p1@HES6!2.23!592.13!HES6;;chr2:182545234..182545252,-!p1@NEUROD1!2.18!151.49!NEUROD1;;chr13:72441315..72441454,-!p1@DACH1!1.92!159.24!DACH1;;chr14:57277098..57277116,-!p3@OTX2!1.90!78.03!OTX2;;chr8:10588010..10588030,-!p1@SOX7!1.87!72.36!SOX7;;chr1:75602043..75602093,+!p1@LHX8!1.85!69.17!LHX8;;chr3:52001448..52001478,-!p2@PCBP4!1.82!841.85!PCBP4;;chr9:14314131..14314147,-!p2@NFIB!1.68!249.17!NFIB;;chr22:19748231..19748317,+!p1@TBX1!1.68!46.90!TBX1;;chr1:164528687..164528711,+!p6@PBX1!1.67!52.57!PBX1;;chr1:44513995..44514031,+!p1@KLF17!1.67!46.07!KLF17;;chr14:29236269..29236285,+!p3@FOXG1!1.67!45.79!FOXG1;;chr8:128748308..128748324,+!p2@MYC!1.58!963.04!MYC;;chr14:29237009..29237049,+!p4@FOXG1!1.58!37.22!FOXG1;;chr2:162272716..162272753,+!p3@TBR1!1.58!36.80!TBR1;;chr8:106330656..106330684,+!p1@ZFPM2!1.53!83.84!ZFPM2;;chr13:72441074..72441172,-!p2@DACH1!1.52!32.24!DACH1;;chr19:46800289..46800327,+!p2@HIF3A!1.52!31.82!HIF3A;;chr11:63684602..63684664,-!p1@RCOR2!1.48!56.45!RCOR2;;chr3:147127142..147127168,+!p1@ZIC1!1.44!26.84!ZIC1;;chr12:125003087..125003141,-!p4@NCOR2!1.42!32.51!NCOR2;;chr9:14314106..14314119,-!p5@NFIB!1.40!42.47!NFIB;;chr18:55102598..55102623,+!p1@ONECUT2!1.39!23.66!ONECUT2;;chr2:5832508..5832524,+!p1@SOX11!1.38!23.24!SOX11;;chr15:76629123..76629151,+!p1@ISL2!1.37!24.76!ISL2;;chr18:55102628..55102646,+!p2@ONECUT2!1.36!22.00!ONECUT2;;chr12:54447637..54447659,+!p4@HOXC4!1.36!21.72!HOXC4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.35!21.44!PEG3;;chr12:54447599..54447630,+!p3@HOXC4!1.34!25.32!HOXC4;;chr9:14313893..14313908,-!p7@NFIB!1.33!29.33!NFIB;;chr8:40755333..40755352,-!p1@ZMAT4!1.33!20.20!ZMAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.32!20.06!KDM5D;;chr13:37494365..37494381,-!p1@SMAD9!1.31!33.20!SMAD9;;chr3:52002194..52002250,-!p5@PCBP4!1.29!18.68!PCBP4;;chr1:221052840..221052875,+!p4@HLX!1.28!21.58!HLX;;chr14:29234581..29234601,+!p2@FOXG1!1.28!18.26!FOXG1;;chr14:57277163..57277168,-!p4@OTX2!1.26!17.16!OTX2;;chr19:47523058..47523114,+!p1@NPAS1!1.26!17.02!NPAS1;;chr20:20348740..20348757,+!p1@INSM1!1.25!16.60!INSM1;;chr14:24553835..24553850,-!p1@NRL!1.25!16.60!NRL;;chr9:14314566..14314618,-!p1@NFIB!1.24!190.09!NFIB;;chr19:50432453..50432468,+!p1@ATF5!1.23!876.85!ATF5;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.03!TSHZ2;;chr1:221052733..221052749,+!p2@HLX!1.23!20.89!HLX;;chr17:37764128..37764258,-!p1@NEUROD2!1.23!15.91!NEUROD2;;chr11:125034640..125034655,+!p1@PKNOX2!1.22!15.50!PKNOX2;;chr8:86089417..86089440,+!p2@E2F5!1.19!28.78!E2F5;;chr19:22817119..22817145,+!p1@ZNF492!1.19!23.93!ZNF492;;chr8:80679993..80680011,-!p1@HEY1!1.18!20.61!HEY1;;chr2:25475120..25475176,-!p2@DNMT3A!1.18!18.95!DNMT3A;;chr9:14307229..14307286,-!p10@NFIB!1.18!15.77!NFIB;;chr9:20621927..20621996,-!p3@MLLT3!1.17!23.24!MLLT3;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.42!ZIC1;;chr12:66218183..66218209,+!p4@HMGA2!1.15!25.04!HMGA2;;chr3:25469724..25469773,+!p1@RARB!1.15!18.82!RARB;;chr11:8102846..8102892,+!p1@TUB!1.15!18.40!TUB;;chr8:106330696..106330719,+!p2@ZFPM2!1.15!16.88!ZFPM2;;chr8:81398444..81398472,+!p1@ZBTB10!1.14!51.88!ZBTB10;;chr3:25470156..25470227,+!p2@RARB!1.14!12.73!RARB;;chr3:52001426..52001447,-!p3@PCBP4!1.12!34.73!PCBP4;;chr9:14314066..14314075,-!p11@NFIB!1.12!12.31!NFIB;;chr9:3525910..3525955,-!p4@RFX3!1.11!35.97!RFX3;;chr17:53342311..53342400,+!p1@HLF!1.09!13.14!HLF;;chr11:125034605..125034636,+!p2@PKNOX2!1.09!11.21!PKNOX2;;chr1:247171347..247171366,-!p2@ZNF695!1.07!19.78!ZNF695;;chr1:23857325..23857416,-!p2@E2F2!1.07!12.45!E2F2;;chr16:51185318..51185348,-!p2@SALL1!1.07!10.79!SALL1;;chr13:37494306..37494324,-!p4@SMAD9!1.07!10.65!SMAD9;;chr14:21562671..21562702,-!p8@ZNF219!1.06!10.38!ZNF219;;chr14:29236301..29236317,+!p5@FOXG1!1.06!10.38!FOXG1;;chr3:44626446..44626477,+!p1@ZNF660!1.04!17.85!ZNF660;;chr9:14082760..14082775,-!p6@NFIB!1.04!16.60!NFIB;;chr1:41827095..41827155,+!p1@FOXO6!1.04!13.70!FOXO6;;chr9:3525867..3525902,-!p3@RFX3!1.02!33.20!RFX3;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.73!HMGA2;;chrX:84499081..84499115,+!p2@ZNF711!1.02!13.97!ZNF711;;chr17:42295777..42295816,-!p7@UBTF!1.02!11.48!UBTF;;chr5:134369905..134369972,-!p1@PITX1!1.01!14.25!PITX1;;chr2:239149300..239149321,-!p2@HES6!1.01!9.27!HES6;;chr2:45236540..45236577,-!p1@SIX2!1.01!9.27!SIX2;;chr9:14083467..14083483,-!p4@NFIB!1.00!22.41!NFIB;;chr8:128750654..128750793,+!p3@MYC!0.99!35.83!MYC;;chr12:66218152..66218174,+!p10@HMGA2!0.99!9.55!HMGA2;;chr14:21566540..21566580,-!p2@ZNF219!0.98!11.76!ZNF219;;chr10:70320074..70320106,+!p1@TET1!0.97!17.16!TET1;;chr11:71955210..71955227,-!p1@PHOX2A!0.97!8.44!PHOX2A;;chr14:36003363..36003378,+!p1@INSM2!0.97!8.44!INSM2;;chr9:14308004..14308041,-!p14@NFIB!0.96!8.16!NFIB;;chr1:10856665..10856683,-!p4@CASZ1!0.96!8.16!CASZ1;;chr12:85673977..85674015,+!p1@ALX1!0.96!8.02!ALX1;;chr14:29236169..29236216,+!p6@FOXG1!0.96!8.02!FOXG1;;chr19:12163769..12163798,-!p1@ZNF878!0.95!10.38!ZNF878;;chr1:164528975..164528998,+!p13@PBX1!0.95!7.89!PBX1;;chr1:165414325..165414369,-!p1@RXRG!0.95!7.89!RXRG;;chr1:59249645..59249656,-!p4@JUN!0.94!19.92!JUN;;chr5:138609782..138609826,+!p5@MATR3!0.93!50.22!MATR3;;chr9:3525968..3526016,-!p1@RFX3!0.93!44.82!RFX3;;chr1:3569072..3569093,+!p1@TP73!0.93!7.61!TP73;;chr9:77112225..77112238,+!p2@RORB!0.93!7.47!RORB;;chr15:96874012..96874042,+!p2@NR2F2!0.92!68.34!NR2F2;;chr14:73360799..73360817,-!p1@DPF3!0.92!26.56!DPF3;;chr1:221052776..221052799,+!p1@HLX!0.92!13.42!HLX;;chr8:128752771..128752843,+!p9@MYC!0.92!10.65!MYC;;chr1:214161272..214161322,+!p1@PROX1!0.92!10.38!PROX1;;chr12:54447686..54447704,+!p5@HOXC4!0.92!7.33!HOXC4;;chr5:176738887..176738934,-!p1@MXD3!0.91!49.25!MXD3;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.48!ZNF724P;;chr6:20402102..20402152,+!p1@E2F3!0.91!30.85!E2F3;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.04!MLLT11;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.65!HMGA2;;chr3:40547564..40547616,+!p1@ZNF620!0.91!10.24!ZNF620;;chr1:10856694..10856715,-!p3@CASZ1!0.91!7.19!CASZ1;;chr11:8040739..8040815,+!p4@TUB!0.91!7.06!TUB;;chr1:23857698..23857733,-!p1@E2F2!0.90!13.00!E2F2;;chr9:14314522..14314556,-!p3@NFIB!0.89!16.33!NFIB;;chr12:66218378..66218401,+!p6@HMGA2!0.89!10.65!HMGA2;;chr1:247171316..247171336,-!p3@ZNF695!0.89!10.38!ZNF695;;chr2:166326200..166326216,+!p1@CSRNP3!0.89!10.24!CSRNP3;;chr17:79881332..79881348,-!p3@MAFG!0.89!10.10!MAFG;;chr19:11750566..11750627,+!p1@ZNF833P!0.89!9.27!ZNF833P;;chr8:10588174..10588200,-!p3@SOX7!0.89!6.78!SOX7;;chr8:86089369..86089408,+!p1@E2F5!0.88!18.54!E2F5;;chr8:124286670..124286702,-!p3@ZHX1!0.88!11.76!ZHX1;;chr2:85981222..85981259,+!p2@ATOH8!0.88!11.07!ATOH8;;chr20:51589133..51589159,+!p2@TSHZ2!0.88!6.64!TSHZ2;;chr13:37494275..37494304,-!p2@SMAD9!0.88!6.50!SMAD9;;chr19:19729477..19729542,-!p1@PBX4!0.87!14.25!PBX4;;chr21:34144157..34144175,-!p3@GCFC1!0.87!10.65!GCFC1;;chr3:148804275..148804346,-!p1@HLTF!0.86!217.35!HLTF;;chr1:153940354..153940395,+!p1@CREB3L4!0.86!26.42!CREB3L4;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.86!25.32!HNRPK;;chr7:27196267..27196311,-!p1@HOXA7!0.86!6.23!HOXA7;;chr7:35293685..35293718,-!p1@TBX20!0.86!6.23!TBX20;;chr19:9695169..9695188,-!p1@ZNF121!0.85!113.86!ZNF121;;chr20:45142154..45142227,-!p1@ZNF334!0.85!12.45!ZNF334;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.58!ZNF711;;chr3:126076242..126076257,-!p1@KLF15!0.85!7.75!KLF15;;chr8:128752850..128752874,+!p12@MYC!0.85!7.47!MYC;;chr1:38512457..38512474,-!p1@POU3F1!0.85!6.64!POU3F1;;chr19:47538560..47538591,+!p2@NPAS1!0.85!6.09!NPAS1;;chr1:75600318..75600329,+!p4@LHX8!0.85!6.09!LHX8;;chr10:70320041..70320065,+!p2@TET1!0.85!6.09!TET1;;chr22:42739839..42739867,-!p1@ENST00000515426!0.85!6.09!TCF20;;chr20:306177..306211,+!p2@SOX12!0.84!43.03!SOX12;;chr6:1389789..1389821,+!p1@FOXF2!0.84!8.30!FOXF2;;chr12:125003069..125003080,-!p20@NCOR2!0.84!5.95!NCOR2;;chr19:45971246..45971265,+!p1@FOSB!0.83!115.94!FOSB;;chr14:21994337..21994442,-!p1@SALL2!0.83!16.74!SALL2;;chr2:19558373..19558392,-!p1@OSR1!0.83!16.74!OSR1;;chr20:55204351..55204377,+!p1@TFAP2C!0.83!7.47!TFAP2C;;chr1:75600333..75600348,+!p5@LHX8!0.83!5.81!LHX8;;chr2:74741569..74741620,+!p1@TLX2!0.83!5.81!TLX2;;chr8:128752734..128752763,+!p13@MYC!0.82!6.78!MYC;;chr8:106330543..106330554,+!p4@ZFPM2!0.82!5.53!ZFPM2;;chr2:162272970..162272981,+!p10@TBR1!0.82!5.53!TBR1;;chr1:149858461..149858479,+!p1@BOLA1!0.81!2320.38!BOLA1;;chr8:77593474..77593612,+!p1@ZFHX4!0.81!24.90!ZFHX4;;chr1:23696308..23696339,-!p2@ZNF436!0.81!12.17!ZNF436;;chr1:164528616..164528660,+!p5@PBX1!0.81!11.62!PBX1;;chr8:128750493..128750522,+!p10@MYC!0.81!8.16!MYC;;chr8:80680024..80680046,-!p2@HEY1!0.81!6.23!HEY1;;chr9:77112244..77112262,+!p1@RORB!0.81!6.23!RORB;;chr12:54393880..54393962,+!p1@HOXC9!0.81!5.40!HOXC9;;chr1:247495140..247495177,-!p1@ZNF496!0.80!61.70!ZNF496;;chr15:57511609..57511651,+!p2@TCF12!0.80!9.41!TCF12;;chr17:46132044..46132080,+!p4@NFE2L1!0.80!5.26!NFE2L1;;chr2:180726254..180726275,-!p4@ZNF385B!0.80!5.26!ZNF385B;;chr2:182545282..182545294,-!p2@NEUROD1!0.80!5.26!NEUROD1;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.07!MYBL2;;chr19:37096139..37096170,-!p2@ZNF529!0.79!15.36!ZNF529;;chr11:8102819..8102845,+!p3@TUB!0.79!6.50!TUB;;chr10:131762504..131762555,-!p1@EBF3!0.79!5.12!EBF3;;chr2:180726040..180726052,-!p2@ZNF385B!0.79!5.12!ZNF385B;;chr4:18023350..18023385,-!p1@LCORL!0.78!46.90!LCORL;;chr20:49547691..49547724,-!p2@ADNP!0.78!34.03!ADNP;;chr2:162273241..162273253,+!p4@TBR1!0.78!4.98!TBR1;;chr6:21597765..21597779,+!p2@SOX4!0.77!43.16!SOX4;;chr18:56532100..56532130,+!p1@ZNF532!0.77!9.55!ZNF532;;chr8:73921136..73921151,+!p2@TERF1!0.77!7.75!TERF1;;chr17:47892398..47892407,+!p2@KAT7!0.77!4.84!KAT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| |expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.82!663.24!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.51!320.69!NEUROG1;;chr19:48325184..48325211,+!p1@CRX!2.37!232.98!CRX;;chr14:57272369..57272391,-!p2@OTX2!2.33!214.03!OTX2;;chr2:162272889..162272915,+!p2@TBR1!2.27!186.63!TBR1;;chr2:162272785..162272836,+!p1@TBR1!2.27!183.73!TBR1;;chr14:29235961..29236008,+!p1@FOXG1!2.26!179.99!FOXG1;;chr2:239148671..239148686,-!p1@HES6!2.23!592.13!HES6;;chr2:182545234..182545252,-!p1@NEUROD1!2.18!151.49!NEUROD1;;chr13:72441315..72441454,-!p1@DACH1!1.92!159.24!DACH1;;chr14:57277098..57277116,-!p3@OTX2!1.90!78.03!OTX2;;chr8:10588010..10588030,-!p1@SOX7!1.87!72.36!SOX7;;chr1:75602043..75602093,+!p1@LHX8!1.85!69.17!LHX8;;chr3:52001448..52001478,-!p2@PCBP4!1.82!841.85!PCBP4;;chr9:14314131..14314147,-!p2@NFIB!1.68!249.17!NFIB;;chr22:19748231..19748317,+!p1@TBX1!1.68!46.90!TBX1;;chr1:164528687..164528711,+!p6@PBX1!1.67!52.57!PBX1;;chr1:44513995..44514031,+!p1@KLF17!1.67!46.07!KLF17;;chr14:29236269..29236285,+!p3@FOXG1!1.67!45.79!FOXG1;;chr8:128748308..128748324,+!p2@MYC!1.58!963.04!MYC;;chr14:29237009..29237049,+!p4@FOXG1!1.58!37.22!FOXG1;;chr2:162272716..162272753,+!p3@TBR1!1.58!36.80!TBR1;;chr8:106330656..106330684,+!p1@ZFPM2!1.53!83.84!ZFPM2;;chr13:72441074..72441172,-!p2@DACH1!1.52!32.24!DACH1;;chr19:46800289..46800327,+!p2@HIF3A!1.52!31.82!HIF3A;;chr11:63684602..63684664,-!p1@RCOR2!1.48!56.45!RCOR2;;chr3:147127142..147127168,+!p1@ZIC1!1.44!26.84!ZIC1;;chr12:125003087..125003141,-!p4@NCOR2!1.42!32.51!NCOR2;;chr9:14314106..14314119,-!p5@NFIB!1.40!42.47!NFIB;;chr18:55102598..55102623,+!p1@ONECUT2!1.39!23.66!ONECUT2;;chr2:5832508..5832524,+!p1@SOX11!1.38!23.24!SOX11;;chr15:76629123..76629151,+!p1@ISL2!1.37!24.76!ISL2;;chr18:55102628..55102646,+!p2@ONECUT2!1.36!22.00!ONECUT2;;chr12:54447637..54447659,+!p4@HOXC4!1.36!21.72!HOXC4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.35!21.44!PEG3;;chr12:54447599..54447630,+!p3@HOXC4!1.34!25.32!HOXC4;;chr9:14313893..14313908,-!p7@NFIB!1.33!29.33!NFIB;;chr8:40755333..40755352,-!p1@ZMAT4!1.33!20.20!ZMAT4;;chrY:21906594..21906622,-!p1@KDM5D!1.32!20.06!KDM5D;;chr13:37494365..37494381,-!p1@SMAD9!1.31!33.20!SMAD9;;chr3:52002194..52002250,-!p5@PCBP4!1.29!18.68!PCBP4;;chr1:221052840..221052875,+!p4@HLX!1.28!21.58!HLX;;chr14:29234581..29234601,+!p2@FOXG1!1.28!18.26!FOXG1;;chr14:57277163..57277168,-!p4@OTX2!1.26!17.16!OTX2;;chr19:47523058..47523114,+!p1@NPAS1!1.26!17.02!NPAS1;;chr20:20348740..20348757,+!p1@INSM1!1.25!16.60!INSM1;;chr14:24553835..24553850,-!p1@NRL!1.25!16.60!NRL;;chr9:14314566..14314618,-!p1@NFIB!1.24!190.09!NFIB;;chr19:50432453..50432468,+!p1@ATF5!1.23!876.85!ATF5;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.03!TSHZ2;;chr1:221052733..221052749,+!p2@HLX!1.23!20.89!HLX;;chr17:37764128..37764258,-!p1@NEUROD2!1.23!15.91!NEUROD2;;chr11:125034640..125034655,+!p1@PKNOX2!1.22!15.50!PKNOX2;;chr8:86089417..86089440,+!p2@E2F5!1.19!28.78!E2F5;;chr19:22817119..22817145,+!p1@ZNF492!1.19!23.93!ZNF492;;chr8:80679993..80680011,-!p1@HEY1!1.18!20.61!HEY1;;chr2:25475120..25475176,-!p2@DNMT3A!1.18!18.95!DNMT3A;;chr9:14307229..14307286,-!p10@NFIB!1.18!15.77!NFIB;;chr9:20621927..20621996,-!p3@MLLT3!1.17!23.24!MLLT3;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.42!ZIC1;;chr12:66218183..66218209,+!p4@HMGA2!1.15!25.04!HMGA2;;chr3:25469724..25469773,+!p1@RARB!1.15!18.82!RARB;;chr11:8102846..8102892,+!p1@TUB!1.15!18.40!TUB;;chr8:106330696..106330719,+!p2@ZFPM2!1.15!16.88!ZFPM2;;chr8:81398444..81398472,+!p1@ZBTB10!1.14!51.88!ZBTB10;;chr3:25470156..25470227,+!p2@RARB!1.14!12.73!RARB;;chr3:52001426..52001447,-!p3@PCBP4!1.12!34.73!PCBP4;;chr9:14314066..14314075,-!p11@NFIB!1.12!12.31!NFIB;;chr9:3525910..3525955,-!p4@RFX3!1.11!35.97!RFX3;;chr17:53342311..53342400,+!p1@HLF!1.09!13.14!HLF;;chr11:125034605..125034636,+!p2@PKNOX2!1.09!11.21!PKNOX2;;chr1:247171347..247171366,-!p2@ZNF695!1.07!19.78!ZNF695;;chr1:23857325..23857416,-!p2@E2F2!1.07!12.45!E2F2;;chr16:51185318..51185348,-!p2@SALL1!1.07!10.79!SALL1;;chr13:37494306..37494324,-!p4@SMAD9!1.07!10.65!SMAD9;;chr14:21562671..21562702,-!p8@ZNF219!1.06!10.38!ZNF219;;chr14:29236301..29236317,+!p5@FOXG1!1.06!10.38!FOXG1;;chr3:44626446..44626477,+!p1@ZNF660!1.04!17.85!ZNF660;;chr9:14082760..14082775,-!p6@NFIB!1.04!16.60!NFIB;;chr1:41827095..41827155,+!p1@FOXO6!1.04!13.70!FOXO6;;chr9:3525867..3525902,-!p3@RFX3!1.02!33.20!RFX3;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.73!HMGA2;;chrX:84499081..84499115,+!p2@ZNF711!1.02!13.97!ZNF711;;chr17:42295777..42295816,-!p7@UBTF!1.02!11.48!UBTF;;chr5:134369905..134369972,-!p1@PITX1!1.01!14.25!PITX1;;chr2:239149300..239149321,-!p2@HES6!1.01!9.27!HES6;;chr2:45236540..45236577,-!p1@SIX2!1.01!9.27!SIX2;;chr9:14083467..14083483,-!p4@NFIB!1.00!22.41!NFIB;;chr8:128750654..128750793,+!p3@MYC!0.99!35.83!MYC;;chr12:66218152..66218174,+!p10@HMGA2!0.99!9.55!HMGA2;;chr14:21566540..21566580,-!p2@ZNF219!0.98!11.76!ZNF219;;chr10:70320074..70320106,+!p1@TET1!0.97!17.16!TET1;;chr11:71955210..71955227,-!p1@PHOX2A!0.97!8.44!PHOX2A;;chr14:36003363..36003378,+!p1@INSM2!0.97!8.44!INSM2;;chr9:14308004..14308041,-!p14@NFIB!0.96!8.16!NFIB;;chr1:10856665..10856683,-!p4@CASZ1!0.96!8.16!CASZ1;;chr12:85673977..85674015,+!p1@ALX1!0.96!8.02!ALX1;;chr14:29236169..29236216,+!p6@FOXG1!0.96!8.02!FOXG1;;chr19:12163769..12163798,-!p1@ZNF878!0.95!10.38!ZNF878;;chr1:164528975..164528998,+!p13@PBX1!0.95!7.89!PBX1;;chr1:165414325..165414369,-!p1@RXRG!0.95!7.89!RXRG;;chr1:59249645..59249656,-!p4@JUN!0.94!19.92!JUN;;chr5:138609782..138609826,+!p5@MATR3!0.93!50.22!MATR3;;chr9:3525968..3526016,-!p1@RFX3!0.93!44.82!RFX3;;chr1:3569072..3569093,+!p1@TP73!0.93!7.61!TP73;;chr9:77112225..77112238,+!p2@RORB!0.93!7.47!RORB;;chr15:96874012..96874042,+!p2@NR2F2!0.92!68.34!NR2F2;;chr14:73360799..73360817,-!p1@DPF3!0.92!26.56!DPF3;;chr1:221052776..221052799,+!p1@HLX!0.92!13.42!HLX;;chr8:128752771..128752843,+!p9@MYC!0.92!10.65!MYC;;chr1:214161272..214161322,+!p1@PROX1!0.92!10.38!PROX1;;chr12:54447686..54447704,+!p5@HOXC4!0.92!7.33!HOXC4;;chr5:176738887..176738934,-!p1@MXD3!0.91!49.25!MXD3;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.48!ZNF724P;;chr6:20402102..20402152,+!p1@E2F3!0.91!30.85!E2F3;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.04!MLLT11;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.65!HMGA2;;chr3:40547564..40547616,+!p1@ZNF620!0.91!10.24!ZNF620;;chr1:10856694..10856715,-!p3@CASZ1!0.91!7.19!CASZ1;;chr11:8040739..8040815,+!p4@TUB!0.91!7.06!TUB;;chr1:23857698..23857733,-!p1@E2F2!0.90!13.00!E2F2;;chr9:14314522..14314556,-!p3@NFIB!0.89!16.33!NFIB;;chr12:66218378..66218401,+!p6@HMGA2!0.89!10.65!HMGA2;;chr1:247171316..247171336,-!p3@ZNF695!0.89!10.38!ZNF695;;chr2:166326200..166326216,+!p1@CSRNP3!0.89!10.24!CSRNP3;;chr17:79881332..79881348,-!p3@MAFG!0.89!10.10!MAFG;;chr19:11750566..11750627,+!p1@ZNF833P!0.89!9.27!ZNF833P;;chr8:10588174..10588200,-!p3@SOX7!0.89!6.78!SOX7;;chr8:86089369..86089408,+!p1@E2F5!0.88!18.54!E2F5;;chr8:124286670..124286702,-!p3@ZHX1!0.88!11.76!ZHX1;;chr2:85981222..85981259,+!p2@ATOH8!0.88!11.07!ATOH8;;chr20:51589133..51589159,+!p2@TSHZ2!0.88!6.64!TSHZ2;;chr13:37494275..37494304,-!p2@SMAD9!0.88!6.50!SMAD9;;chr19:19729477..19729542,-!p1@PBX4!0.87!14.25!PBX4;;chr21:34144157..34144175,-!p3@GCFC1!0.87!10.65!GCFC1;;chr3:148804275..148804346,-!p1@HLTF!0.86!217.35!HLTF;;chr1:153940354..153940395,+!p1@CREB3L4!0.86!26.42!CREB3L4;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.86!25.32!HNRPK;;chr7:27196267..27196311,-!p1@HOXA7!0.86!6.23!HOXA7;;chr7:35293685..35293718,-!p1@TBX20!0.86!6.23!TBX20;;chr19:9695169..9695188,-!p1@ZNF121!0.85!113.86!ZNF121;;chr20:45142154..45142227,-!p1@ZNF334!0.85!12.45!ZNF334;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.58!ZNF711;;chr3:126076242..126076257,-!p1@KLF15!0.85!7.75!KLF15;;chr8:128752850..128752874,+!p12@MYC!0.85!7.47!MYC;;chr1:38512457..38512474,-!p1@POU3F1!0.85!6.64!POU3F1;;chr19:47538560..47538591,+!p2@NPAS1!0.85!6.09!NPAS1;;chr1:75600318..75600329,+!p4@LHX8!0.85!6.09!LHX8;;chr10:70320041..70320065,+!p2@TET1!0.85!6.09!TET1;;chr22:42739839..42739867,-!p1@ENST00000515426!0.85!6.09!TCF20;;chr20:306177..306211,+!p2@SOX12!0.84!43.03!SOX12;;chr6:1389789..1389821,+!p1@FOXF2!0.84!8.30!FOXF2;;chr12:125003069..125003080,-!p20@NCOR2!0.84!5.95!NCOR2;;chr19:45971246..45971265,+!p1@FOSB!0.83!115.94!FOSB;;chr14:21994337..21994442,-!p1@SALL2!0.83!16.74!SALL2;;chr2:19558373..19558392,-!p1@OSR1!0.83!16.74!OSR1;;chr20:55204351..55204377,+!p1@TFAP2C!0.83!7.47!TFAP2C;;chr1:75600333..75600348,+!p5@LHX8!0.83!5.81!LHX8;;chr2:74741569..74741620,+!p1@TLX2!0.83!5.81!TLX2;;chr8:128752734..128752763,+!p13@MYC!0.82!6.78!MYC;;chr8:106330543..106330554,+!p4@ZFPM2!0.82!5.53!ZFPM2;;chr2:162272970..162272981,+!p10@TBR1!0.82!5.53!TBR1;;chr1:149858461..149858479,+!p1@BOLA1!0.81!2320.38!BOLA1;;chr8:77593474..77593612,+!p1@ZFHX4!0.81!24.90!ZFHX4;;chr1:23696308..23696339,-!p2@ZNF436!0.81!12.17!ZNF436;;chr1:164528616..164528660,+!p5@PBX1!0.81!11.62!PBX1;;chr8:128750493..128750522,+!p10@MYC!0.81!8.16!MYC;;chr8:80680024..80680046,-!p2@HEY1!0.81!6.23!HEY1;;chr9:77112244..77112262,+!p1@RORB!0.81!6.23!RORB;;chr12:54393880..54393962,+!p1@HOXC9!0.81!5.40!HOXC9;;chr1:247495140..247495177,-!p1@ZNF496!0.80!61.70!ZNF496;;chr15:57511609..57511651,+!p2@TCF12!0.80!9.41!TCF12;;chr17:46132044..46132080,+!p4@NFE2L1!0.80!5.26!NFE2L1;;chr2:180726254..180726275,-!p4@ZNF385B!0.80!5.26!ZNF385B;;chr2:182545282..182545294,-!p2@NEUROD1!0.80!5.26!NEUROD1;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.07!MYBL2;;chr19:37096139..37096170,-!p2@ZNF529!0.79!15.36!ZNF529;;chr11:8102819..8102845,+!p3@TUB!0.79!6.50!TUB;;chr10:131762504..131762555,-!p1@EBF3!0.79!5.12!EBF3;;chr2:180726040..180726052,-!p2@ZNF385B!0.79!5.12!ZNF385B;;chr4:18023350..18023385,-!p1@LCORL!0.78!46.90!LCORL;;chr20:49547691..49547724,-!p2@ADNP!0.78!34.03!ADNP;;chr2:162273241..162273253,+!p4@TBR1!0.78!4.98!TBR1;;chr6:21597765..21597779,+!p2@SOX4!0.77!43.16!SOX4;;chr18:56532100..56532130,+!p1@ZNF532!0.77!9.55!ZNF532;;chr8:73921136..73921151,+!p2@TERF1!0.77!7.75!TERF1;;chr17:47892398..47892407,+!p2@KAT7!0.77!4.84!KAT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WR;;chr19:12175535..12175554,+!p1@ZNF844!0.36!10.79!ZNF844;;chr16:2273645..2273671,+!p2@E4F1!0.36!10.10!E4F1;;chr1:161736072..161736093,+!p2@ATF6!0.36!8.99!ATF6;;chrX:83757450..83757485,-!p1@HDX!0.36!8.30!HDX;;chr19:37341752..37341816,+!p1@ZNF345!0.36!5.67!ZNF345;;chr8:182424..182462,+!p1@ZNF596!0.36!4.70!ZNF596;;chr20:31350184..31350200,+!p1@DNMT3B!0.36!3.60!DNMT3B;;chr20:48807779..48807802,+!p10@CEBPB!0.36!2.63!CEBPB;;chr4:87968203..87968221,+!p11@AFF1!0.36!2.63!AFF1;;chr1:247242107..247242120,-!p2@ZNF670!0.36!2.49!ZNF670;;chr1:221052700..221052730,+!p5@HLX!0.36!2.35!HLX;;chrX:76937858..76937877,-!p5@ATRX!0.36!2.21!ATRX;;chr3:71632894..71632909,-!p17@FOXP1!0.36!2.21!FOXP1;;chr14:24025106..24025172,-!p2@ZFHX2!0.36!1.94!ZFHX2;;chr3:150126200..150126211,+!p11@TSC22D2!0.36!1.80!TSC22D2;;chr18:45457909..45457939,-!p8@SMAD2!0.36!1.80!SMAD2;;chr3:47823298..47823423,-!p1@SMARCC1!0.35!68.34!SMARCC1;;chr19:36705998..36706021,+!p2@ZNF146!0.35!28.64!ZNF146;;chr12:104531945..104531996,-!p1@NFYB!0.35!27.53!NFYB;;chr4:26322419..26322479,+!p2@RBPJ!0.35!23.93!RBPJ;;chr10:105110831..105110885,-!p1@PCGF6!0.35!19.09!PCGF6;;chr19:1863591..1863611,-!p2@KLF16!0.35!18.82!KLF16;;chr19:37019136..37019178,-!p1@ZNF260!0.35!16.05!ZNF260;;chr3:141868357..141868393,-!p3@TFDP2!0.35!12.73!TFDP2;;chr7:64838786..64838809,+!p2@ZNF92!0.35!10.93!ZNF92;;chr19:23870007..23870022,-!p2@ZNF675!0.35!5.95!ZNF675;;chr1:61547894..61547968,+!p2@NFIA!0.35!5.26!NFIA;;chr17:41322281..41322328,-!p2@BRCA1!0.35!5.12!BRCA1;;chr19:36705617..36705644,+!p4@ZNF146!0.35!5.12!ZNF146;;chr19:12721790..12721810,+!p2@ZNF791!0.35!4.84!ZNF791;;chr19:37178482..37178520,+!p1@ZNF567!0.35!4.70!ZNF567;;chr14:45722287..45722308,-!p2@MIS18BP1!0.35!4.70!MIS18BP1;;chr2:74229812..74229867,+!p1@TET3!0.35!4.43!TET3;;chr9:32550839..32550962,-!p3@TOPORS!0.35!4.29!TOPORS;;chr15:66994663..66994680,+!p1@SMAD6!0.35!4.15!SMAD6;;chr19:35168633..35168652,+!p2@ZNF302!0.35!4.15!ZNF302;;chr1:153939955..153940009,+!p2@CREB3L4!0.35!4.01!CREB3L4;;chr4:146402925..146402957,+!p4@SMAD1!0.35!3.87!SMAD1;;chr19:35417798..35417842,+!p1@ZNF30!0.35!2.63!ZNF30;;chr6:21597370..21597408,+!p5@SOX4!0.35!2.49!SOX4;;chr1:35657082..35657099,-!p8@SFPQ!0.35!2.35!SFPQ;;chr14:64970593..64970627,+!p5@ZBTB1!0.35!2.21!ZBTB1;;chr3:44754176..44754196,+!p2@ZNF502!0.35!2.08!ZNF502;;chr19:52391220..52391251,-!p2@ZNF577!0.35!2.08!ZNF577;;chr20:62680984..62680999,-!p1@SOX18!0.35!1.94!SOX18;;chr14:69260117..69260141,-!p4@ZFP36L1!0.35!1.94!ZFP36L1;;chr17:36873780..36873800,+!p5@MLLT6!0.35!1.94!MLLT6;;chr9:127533519..127533573,-!p2@NR6A1!0.35!1.66!NR6A1;;chr5:124082580..124082603,-!p4@ZNF608!0.35!1.52!ZNF608;;chr8:106330848..106330859,+!p5@ZFPM2!0.35!1.25!ZFPM2;;chr8:128747729..128747748,+!p14@MYC!0.35!1.25!MYC;;chr15:90294062..90294079,-!p2@MESP1!0.35!1.25!MESP1;;chr18:56532079..56532095,+!p8@ZNF532!0.35!1.25!ZNF532;;chr18:6414849..6414876,-!p2@L3MBTL4!0.35!1.25!L3MBTL4;;chr19:50435673..50435690,+!p8@ATF5!0.35!1.25!ATF5;;chr19:58545369..58545404,+!p2@ZSCAN1!0.35!1.25!ZSCAN1;;chr1:227751287..227751298,+!p2@ZNF678!0.35!1.25!ZNF678;;chr1:40367668..40367684,-!p2@MYCL1!0.35!1.25!MYCL1;;chr1:40367692..40367703,-!p3@MYCL1!0.35!1.25!MYCL1;;chr12:54394059..54394088,+!p3@HOXC9!0.35!1.25!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.35!1.25!HOXC5;;chr9:86594363..86594374,-!p@chr9:86594363..86594374,-!0.35!1.25!HNRPK;;chr2:175199675..175199688,+!p1@SP9!0.35!1.25!SP9;;chr2:42721205..42721307,+!p4@MTA3!0.35!1.25!MTA3;;chr2:85981969..85982019,+!p6@ATOH8!0.35!1.25!ATOH8;;chr3:183415558..183415649,+!p1@YEATS2!0.34!53.13!YEATS2;;chr1:161736102..161736123,+!p1@ATF6!0.34!52.30!ATF6;;chr1:211432700..211432753,+!p1@RCOR3!0.34!36.52!RCOR3;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.34!13.14!ZNF410;;chr11:123612319..123612395,-!p1@ZNF202!0.34!10.79!ZNF202;;chr3:44519131..44519186,-!p1@ZNF445!0.34!10.51!ZNF445;;chr19:12595586..12595637,-!p2@ZNF709!0.34!7.33!ZNF709;;chr19:58331073..58331084,+!p3@ZNF587!0.34!6.78!ZNF587;;chr1:151043216..151043256,+!p1@GABPB2!0.34!6.23!GABPB2;;chr19:11071652..11071682,+!p3@SMARCA4!0.34!6.23!SMARCA4;;chr19:44809143..44809187,-!p1@ZNF235!0.34!5.26!ZNF235;;chr10:38146510..38146576,-!p1@ZNF248!0.34!4.98!ZNF248;;chr9:37465273..37465338,-!p2@ZBTB5!0.34!4.43!ZBTB5;;chr19:42759300..42759324,-!p2@ERF!0.34!4.29!ERF;;chr15:96874244..96874259,+!p5@NR2F2!0.34!4.01!NR2F2;;chr1:249153232..249153251,-!p2@ZNF692!0.34!3.87!ZNF692;;chr2:157199008..157199023,-!p3@NR4A2!0.34!3.46!NR4A2;;chr19:12203100..12203132,+!p1@ZNF788!0.34!3.32!ZNF788;;chr16:3285119..3285133,-!p2@ZNF200!0.34!3.18!ZNF200;;chr19:36909484..36909525,-!p2@ZFP82!0.34!3.18!ZFP82;;chr9:102584128..102584144,+!p3@NR4A3!0.34!3.04!NR4A3;;chr19:36980756..36980795,-!p3@ZNF566!0.34!2.49!ZNF566;;chr12:432372..432377,-!p3@KDM5A!0.34!2.35!KDM5A;;chr14:105886300..105886316,+!p2@MTA1!0.34!2.35!MTA1;;chr19:57019215..57019250,+!p1@ZNF471!0.34!2.21!ZNF471;;chr12:125002827..125002855,-!p5@NCOR2!0.34!2.08!NCOR2;;chr6:27356527..27356557,+!p2@ZNF391!0.34!1.94!ZNF391;;chr15:71184837..71184877,-!p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| ||
Line 40: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aD283%2520Med.CNhs12805.10838-111E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aD283%2520Med.CNhs12805.10838-111E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aD283%2520Med.CNhs12805.10838-111E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aD283%2520Med.CNhs12805.10838-111E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/medulloblastoma%2520cell%2520line%253aD283%2520Med.CNhs12805.10838-111E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10838-111E1 | |id=FF:10838-111E1 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101359 | |is_a=EFO:0002091;;FF:0000210;;FF:0101359 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12805 | |library_id=CNhs12805 | ||
|library_id_phase_based=2:CNhs12805 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10838 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10838 | |||
|name=medulloblastoma cell line:D283 Med | |name=medulloblastoma cell line:D283 Med | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12805,LSID972,release012,COMPLETED | |profile_hcage=CNhs12805,LSID972,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 63: | Line 77: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.11E+03 | ||
|rna_weight_ug=92.0381 | |rna_weight_ug=92.0381 | ||
|rnaseq_library_id=RDhi10089 | |||
|sample_age=6 | |sample_age=6 | ||
|sample_category=cell lines | |sample_category=cell lines | ||
Line 88: | Line 103: | ||
|top_motifs=CRX:3.89411254545;HOX{A6,A7,B6,B7}:2.68923477091;TOPORS:2.26225138659;CDX1,2,4:2.25861044008;ADNP_IRX_SIX_ZHX:2.21370455949;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.14898089447;PITX1..3:2.14329702707;LHX3,4:2.10289105939;POU1F1:2.05308904069;BREu{core}:2.00261718331;TFDP1:1.9952104764;FOX{I1,J2}:1.68448098589;E2F1..5:1.65421308718;NANOG:1.64366777861;AHR_ARNT_ARNT2:1.64320420305;NFY{A,B,C}:1.62512883576;bHLH_family:1.57431620853;ZNF143:1.53180533514;YY1:1.47556551787;ZBTB16:1.42265743862;FOXM1:1.40666831641;VSX1,2:1.33792691124;ARID5B:1.31495230201;POU6F1:1.28412449231;IKZF2:1.27117234269;HIF1A:1.24025655951;NRF1:1.18651167492;TEF:1.18065830012;PRRX1,2:1.16769304883;AIRE:1.1496470568;PDX1:1.12963232349;PAX3,7:1.12169099681;ZNF384:1.11958634397;FOXP1:1.11896989519;NKX2-3_NKX2-5:1.09530089262;ZFP161:1.09281343629;PAX4:1.04572460979;NKX2-2,8:1.02470817188;BPTF:1.02002646954;ZIC1..3:1.00790816923;RREB1:0.973499515791;GATA4:0.964793961918;EVI1:0.941426490741;PBX1:0.904851240696;PATZ1:0.872871948206;GFI1:0.843380126814;MYB:0.840214374669;MED-1{core}:0.835947152614;MZF1:0.798706528671;SOX{8,9,10}:0.797187835286;ATF4:0.779053533108;RBPJ:0.749323443391;TAL1_TCF{3,4,12}:0.645931836261;POU2F1..3:0.638856669925;ELK1,4_GABP{A,B1}:0.628077948067;FOXD3:0.623002390645;PAX8:0.605708308076;NKX2-1,4:0.601328121216;NKX6-1,2:0.594351423585;TFAP2B:0.580258391417;MYBL2:0.574005425043;FOXN1:0.560196586357;NR6A1:0.552700223819;TLX1..3_NFIC{dimer}:0.551138615493;PAX6:0.533078070295;HMGA1,2:0.452785637659;SOX17:0.431199461324;STAT5{A,B}:0.417533225912;HSF1,2:0.415674317387;UFEwm:0.360569153201;OCT4_SOX2{dimer}:0.354520081587;MYOD1:0.340278109913;RFX1:0.325271968403;RFX2..5_RFXANK_RFXAP:0.299511290001;POU5F1:0.289054033669;KLF4:0.250529672203;TGIF1:0.242198793823;ATF5_CREB3:0.237747553483;MAZ:0.236719526255;PAX5:0.228977426631;CREB1:0.210323355763;GTF2I:0.206679609969;SOX5:0.182780445816;GTF2A1,2:0.180636637563;RXR{A,B,G}:0.169552679734;CDC5L:0.146828996827;SP1:0.134961038921;HOXA9_MEIS1:0.123612368989;TFAP2{A,C}:0.117886059622;HIC1:0.115100373885;T:0.0971767045507;FOXO1,3,4:0.0620806206364;CUX2:0.058630664536;GFI1B:0.0405514343814;FOXP3:0.0387954977942;ZNF423:0.0362550890003;NFIL3:0.00166235105085;MEF2{A,B,C,D}:-0.00158243413551;STAT1,3:-0.0310833902958;SOX2:-0.0363076330851;GATA6:-0.0409591765115;MTE{core}:-0.0578974708418;ALX1:-0.0671942330283;RORA:-0.067459707901;PAX1,9:-0.103995064563;NHLH1,2:-0.106337348207;HOX{A5,B5}:-0.10873780956;EGR1..3:-0.112822564048;TP53:-0.125568225033;ALX4:-0.128610045013;FOXA2:-0.152013158857;ZBTB6:-0.158823726635;REST:-0.169472980165;HNF1A:-0.18631398644;LEF1_TCF7_TCF7L1,2:-0.204388815078;GZF1:-0.211551373024;ONECUT1,2:-0.222791119539;NKX3-1:-0.224498331872;POU3F1..4:-0.230202184041;FOX{F1,F2,J1}:-0.244803808042;HNF4A_NR2F1,2:-0.284665694493;NKX3-2:-0.287160575375;XCPE1{core}:-0.291604400877;JUN:-0.30701841092;AR:-0.315469495727;FOXQ1:-0.334816632536;PAX2:-0.360480760763;FOXL1:-0.385735646228;LMO2:-0.396931661153;HAND1,2:-0.401660648287;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.406418732509;SNAI1..3:-0.428056337803;CEBPA,B_DDIT3:-0.440411011762;MYFfamily:-0.44631360484;ZEB1:-0.470246718653;NFKB1_REL_RELA:-0.480731832735;IKZF1:-0.485881708477;PRDM1:-0.496062188673;TEAD1:-0.530995257023;NR1H4:-0.540249968238;HOX{A4,D4}:-0.540411930912;EN1,2:-0.556094819554;EP300:-0.571061391999;FOX{D1,D2}:-0.582611199585;TBP:-0.622212806404;HES1:-0.627756710815;TBX4,5:-0.658285986619;ATF2:-0.661391563138;HLF:-0.691349200816;NFE2:-0.723325240946;IRF7:-0.741727893526;NR5A1,2:-0.768156167253;DBP:-0.783031102336;SPIB:-0.799535925415;SPI1:-0.804845826529;XBP1:-0.805620975348;ESRRA:-0.80640584513;FOSL2:-0.807847114718;MTF1:-0.844166677221;BACH2:-0.848709188319;FOS_FOS{B,L1}_JUN{B,D}:-0.859318617575;NFE2L2:-0.882605049622;DMAP1_NCOR{1,2}_SMARC:-0.889137355071;HBP1_HMGB_SSRP1_UBTF:-0.88965212655;PPARG:-0.893996166414;RUNX1..3:-0.913947146294;SMAD1..7,9:-0.947245878004;ELF1,2,4:-1.00606556001;NFE2L1:-1.0061438554;NR3C1:-1.01294581497;SPZ1:-1.01611456501;GCM1,2:-1.23462219021;GLI1..3:-1.23562670048;SREBF1,2:-1.2718590306;RXRA_VDR{dimer}:-1.28469896906;SRF:-1.30714716139;IRF1,2:-1.32331825843;ETS1,2:-1.40298331698;NFIX:-1.49883005999;HMX1:-1.52929682334;MAFB:-1.53373402198;NFATC1..3:-1.55716745083;ATF6:-1.57118336089;ZNF238:-1.57174275827;EBF1:-1.65623740507;NANOG{mouse}:-1.65992963252;ESR1:-1.72333673117;TFAP4:-1.73056626625;TLX2:-1.75662504092;ZNF148:-1.83424918951;TFCP2:-2.01833052776;STAT2,4,6:-2.03091061632 | |top_motifs=CRX:3.89411254545;HOX{A6,A7,B6,B7}:2.68923477091;TOPORS:2.26225138659;CDX1,2,4:2.25861044008;ADNP_IRX_SIX_ZHX:2.21370455949;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.14898089447;PITX1..3:2.14329702707;LHX3,4:2.10289105939;POU1F1:2.05308904069;BREu{core}:2.00261718331;TFDP1:1.9952104764;FOX{I1,J2}:1.68448098589;E2F1..5:1.65421308718;NANOG:1.64366777861;AHR_ARNT_ARNT2:1.64320420305;NFY{A,B,C}:1.62512883576;bHLH_family:1.57431620853;ZNF143:1.53180533514;YY1:1.47556551787;ZBTB16:1.42265743862;FOXM1:1.40666831641;VSX1,2:1.33792691124;ARID5B:1.31495230201;POU6F1:1.28412449231;IKZF2:1.27117234269;HIF1A:1.24025655951;NRF1:1.18651167492;TEF:1.18065830012;PRRX1,2:1.16769304883;AIRE:1.1496470568;PDX1:1.12963232349;PAX3,7:1.12169099681;ZNF384:1.11958634397;FOXP1:1.11896989519;NKX2-3_NKX2-5:1.09530089262;ZFP161:1.09281343629;PAX4:1.04572460979;NKX2-2,8:1.02470817188;BPTF:1.02002646954;ZIC1..3:1.00790816923;RREB1:0.973499515791;GATA4:0.964793961918;EVI1:0.941426490741;PBX1:0.904851240696;PATZ1:0.872871948206;GFI1:0.843380126814;MYB:0.840214374669;MED-1{core}:0.835947152614;MZF1:0.798706528671;SOX{8,9,10}:0.797187835286;ATF4:0.779053533108;RBPJ:0.749323443391;TAL1_TCF{3,4,12}:0.645931836261;POU2F1..3:0.638856669925;ELK1,4_GABP{A,B1}:0.628077948067;FOXD3:0.623002390645;PAX8:0.605708308076;NKX2-1,4:0.601328121216;NKX6-1,2:0.594351423585;TFAP2B:0.580258391417;MYBL2:0.574005425043;FOXN1:0.560196586357;NR6A1:0.552700223819;TLX1..3_NFIC{dimer}:0.551138615493;PAX6:0.533078070295;HMGA1,2:0.452785637659;SOX17:0.431199461324;STAT5{A,B}:0.417533225912;HSF1,2:0.415674317387;UFEwm:0.360569153201;OCT4_SOX2{dimer}:0.354520081587;MYOD1:0.340278109913;RFX1:0.325271968403;RFX2..5_RFXANK_RFXAP:0.299511290001;POU5F1:0.289054033669;KLF4:0.250529672203;TGIF1:0.242198793823;ATF5_CREB3:0.237747553483;MAZ:0.236719526255;PAX5:0.228977426631;CREB1:0.210323355763;GTF2I:0.206679609969;SOX5:0.182780445816;GTF2A1,2:0.180636637563;RXR{A,B,G}:0.169552679734;CDC5L:0.146828996827;SP1:0.134961038921;HOXA9_MEIS1:0.123612368989;TFAP2{A,C}:0.117886059622;HIC1:0.115100373885;T:0.0971767045507;FOXO1,3,4:0.0620806206364;CUX2:0.058630664536;GFI1B:0.0405514343814;FOXP3:0.0387954977942;ZNF423:0.0362550890003;NFIL3:0.00166235105085;MEF2{A,B,C,D}:-0.00158243413551;STAT1,3:-0.0310833902958;SOX2:-0.0363076330851;GATA6:-0.0409591765115;MTE{core}:-0.0578974708418;ALX1:-0.0671942330283;RORA:-0.067459707901;PAX1,9:-0.103995064563;NHLH1,2:-0.106337348207;HOX{A5,B5}:-0.10873780956;EGR1..3:-0.112822564048;TP53:-0.125568225033;ALX4:-0.128610045013;FOXA2:-0.152013158857;ZBTB6:-0.158823726635;REST:-0.169472980165;HNF1A:-0.18631398644;LEF1_TCF7_TCF7L1,2:-0.204388815078;GZF1:-0.211551373024;ONECUT1,2:-0.222791119539;NKX3-1:-0.224498331872;POU3F1..4:-0.230202184041;FOX{F1,F2,J1}:-0.244803808042;HNF4A_NR2F1,2:-0.284665694493;NKX3-2:-0.287160575375;XCPE1{core}:-0.291604400877;JUN:-0.30701841092;AR:-0.315469495727;FOXQ1:-0.334816632536;PAX2:-0.360480760763;FOXL1:-0.385735646228;LMO2:-0.396931661153;HAND1,2:-0.401660648287;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.406418732509;SNAI1..3:-0.428056337803;CEBPA,B_DDIT3:-0.440411011762;MYFfamily:-0.44631360484;ZEB1:-0.470246718653;NFKB1_REL_RELA:-0.480731832735;IKZF1:-0.485881708477;PRDM1:-0.496062188673;TEAD1:-0.530995257023;NR1H4:-0.540249968238;HOX{A4,D4}:-0.540411930912;EN1,2:-0.556094819554;EP300:-0.571061391999;FOX{D1,D2}:-0.582611199585;TBP:-0.622212806404;HES1:-0.627756710815;TBX4,5:-0.658285986619;ATF2:-0.661391563138;HLF:-0.691349200816;NFE2:-0.723325240946;IRF7:-0.741727893526;NR5A1,2:-0.768156167253;DBP:-0.783031102336;SPIB:-0.799535925415;SPI1:-0.804845826529;XBP1:-0.805620975348;ESRRA:-0.80640584513;FOSL2:-0.807847114718;MTF1:-0.844166677221;BACH2:-0.848709188319;FOS_FOS{B,L1}_JUN{B,D}:-0.859318617575;NFE2L2:-0.882605049622;DMAP1_NCOR{1,2}_SMARC:-0.889137355071;HBP1_HMGB_SSRP1_UBTF:-0.88965212655;PPARG:-0.893996166414;RUNX1..3:-0.913947146294;SMAD1..7,9:-0.947245878004;ELF1,2,4:-1.00606556001;NFE2L1:-1.0061438554;NR3C1:-1.01294581497;SPZ1:-1.01611456501;GCM1,2:-1.23462219021;GLI1..3:-1.23562670048;SREBF1,2:-1.2718590306;RXRA_VDR{dimer}:-1.28469896906;SRF:-1.30714716139;IRF1,2:-1.32331825843;ETS1,2:-1.40298331698;NFIX:-1.49883005999;HMX1:-1.52929682334;MAFB:-1.53373402198;NFATC1..3:-1.55716745083;ATF6:-1.57118336089;ZNF238:-1.57174275827;EBF1:-1.65623740507;NANOG{mouse}:-1.65992963252;ESR1:-1.72333673117;TFAP4:-1.73056626625;TLX2:-1.75662504092;ZNF148:-1.83424918951;TFCP2:-2.01833052776;STAT2,4,6:-2.03091061632 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10838-111E1;search_select_hide=table117:FF:10838-111E1 | |||
}} | }} |
Latest revision as of 15:08, 3 June 2020
Name: | medulloblastoma cell line:D283 Med |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12805 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12805
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12805
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.22 |
10 | 10 | 0.207 |
100 | 100 | 0.8 |
101 | 101 | 0.722 |
102 | 102 | 0.969 |
103 | 103 | 0.0324 |
104 | 104 | 0.446 |
105 | 105 | 0.0502 |
106 | 106 | 0.0127 |
107 | 107 | 0.0783 |
108 | 108 | 0.846 |
109 | 109 | 0.0586 |
11 | 11 | 0.0994 |
110 | 110 | 0.399 |
111 | 111 | 0.271 |
112 | 112 | 0.223 |
113 | 113 | 0.451 |
114 | 114 | 0.0148 |
115 | 115 | 0.602 |
116 | 116 | 0.675 |
117 | 117 | 0.322 |
118 | 118 | 0.788 |
119 | 119 | 0.378 |
12 | 12 | 0.838 |
120 | 120 | 0.353 |
121 | 121 | 0.816 |
122 | 122 | 0.513 |
123 | 123 | 0.893 |
124 | 124 | 0.149 |
125 | 125 | 0.956 |
126 | 126 | 0.534 |
127 | 127 | 0.336 |
128 | 128 | 0.0387 |
129 | 129 | 0.333 |
13 | 13 | 0.855 |
130 | 130 | 0.713 |
131 | 131 | 0.42 |
132 | 132 | 0.448 |
133 | 133 | 0.0397 |
134 | 134 | 0.292 |
135 | 135 | 0.00813 |
136 | 136 | 0.659 |
137 | 137 | 0.129 |
138 | 138 | 0.195 |
139 | 139 | 0.0133 |
14 | 14 | 0.529 |
140 | 140 | 0.353 |
141 | 141 | 0.965 |
142 | 142 | 0.67 |
143 | 143 | 0.00129 |
144 | 144 | 0.966 |
145 | 145 | 0.414 |
146 | 146 | 0.289 |
147 | 147 | 0.845 |
148 | 148 | 0.0759 |
149 | 149 | 0.0526 |
15 | 15 | 0.17 |
150 | 150 | 0.462 |
151 | 151 | 0.134 |
152 | 152 | 0.0226 |
153 | 153 | 0.98 |
154 | 154 | 0.823 |
155 | 155 | 0.909 |
156 | 156 | 0.458 |
157 | 157 | 0.257 |
158 | 158 | 0.884 |
159 | 159 | 0.0789 |
16 | 16 | 0.195 |
160 | 160 | 0.508 |
161 | 161 | 0.0918 |
162 | 162 | 0.659 |
163 | 163 | 0.696 |
164 | 164 | 0.516 |
165 | 165 | 0.151 |
166 | 166 | 0.895 |
167 | 167 | 0.587 |
168 | 168 | 0.231 |
169 | 169 | 0.0068 |
17 | 17 | 0.295 |
18 | 18 | 0.263 |
19 | 19 | 0.12 |
2 | 2 | 0.103 |
20 | 20 | 0.53 |
21 | 21 | 0.891 |
22 | 22 | 0.153 |
23 | 23 | 0.00965 |
24 | 24 | 0.563 |
25 | 25 | 0.315 |
26 | 26 | 0.222 |
27 | 27 | 0.0646 |
28 | 28 | 0.905 |
29 | 29 | 0.41 |
3 | 3 | 0.19 |
30 | 30 | 0.402 |
31 | 31 | 0.329 |
32 | 32 | 0.0145 |
33 | 33 | 0.435 |
34 | 34 | 0.239 |
35 | 35 | 0.997 |
36 | 36 | 0.199 |
37 | 37 | 0.17 |
38 | 38 | 0.242 |
39 | 39 | 0.326 |
4 | 4 | 0.755 |
40 | 40 | 0.244 |
41 | 41 | 0.0595 |
42 | 42 | 0.443 |
43 | 43 | 0.135 |
44 | 44 | 0.554 |
45 | 45 | 0.307 |
46 | 46 | 0.208 |
47 | 47 | 0.386 |
48 | 48 | 0.277 |
49 | 49 | 0.213 |
5 | 5 | 0.158 |
50 | 50 | 0.562 |
51 | 51 | 0.243 |
52 | 52 | 0.329 |
53 | 53 | 0.636 |
54 | 54 | 0.283 |
55 | 55 | 0.143 |
56 | 56 | 0.33 |
57 | 57 | 0.878 |
58 | 58 | 0.245 |
59 | 59 | 0.0302 |
6 | 6 | 0.943 |
60 | 60 | 0.0554 |
61 | 61 | 0.407 |
62 | 62 | 0.105 |
63 | 63 | 0.196 |
64 | 64 | 0.478 |
65 | 65 | 0.0518 |
66 | 66 | 0.91 |
67 | 67 | 0.966 |
68 | 68 | 0.495 |
69 | 69 | 0.507 |
7 | 7 | 0.473 |
70 | 70 | 0.0235 |
71 | 71 | 0.103 |
72 | 72 | 0.0463 |
73 | 73 | 0.0216 |
74 | 74 | 0.326 |
75 | 75 | 0.226 |
76 | 76 | 0.885 |
77 | 77 | 0.0547 |
78 | 78 | 0.737 |
79 | 79 | 0.0572 |
8 | 8 | 0.291 |
80 | 80 | 0.0184 |
81 | 81 | 0.53 |
82 | 82 | 0.0321 |
83 | 83 | 0.792 |
84 | 84 | 0.207 |
85 | 85 | 0.0467 |
86 | 86 | 0.659 |
87 | 87 | 0.177 |
88 | 88 | 0.918 |
89 | 89 | 0.0845 |
9 | 9 | 0.0933 |
90 | 90 | 0.814 |
91 | 91 | 0.257 |
92 | 92 | 0.0443 |
93 | 93 | 0.801 |
94 | 94 | 0.106 |
95 | 95 | 0.315 |
96 | 96 | 0.224 |
97 | 97 | 0.436 |
98 | 98 | 0.114 |
99 | 99 | 0.58 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12805
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101359 medulloblastoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0101359 (medulloblastoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)