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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0002100,UBERON:0000483,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000064,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004923,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0003102,UBERON:0007376,UBERON:0000486,UBERON:0003104,UBERON:0000914,UBERON:0005085,UBERON:0005256,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0000412,UBERON:0002067,UBERON:0002329,UBERON:0000924,UBERON:0001992,UBERON:0002416,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0006601,UBERON:0006603,UBERON:0007383,UBERON:0004016,UBERON:0010083,UBERON:0005086,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
|DRA_sample_Accession=CAGE@SAMD00005918
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000333,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002320,CL:0000063,CL:0002371,CL:0000221,CL:0000219,CL:0000220,CL:0000004,CL:0000134,CL:0000255,CL:0002559,CL:0000346,CL:1000428,CL:0000133
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005918
|accession_numbers=CAGE;DRX008296;DRR009168;DRZ000593;DRZ001978;DRZ011943;DRZ013328
|accession_numbers_RNASeq=sRNA-Seq;DRX037206;DRR041572;DRZ007214
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0000412,UBERON:0002067,UBERON:0001992,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002559,CL:0000346,CL:1000428
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000072,FF:0000001,FF:0000071
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:119605214..119605230,-!p1@EN1!1.98!95.43!EN1;;chr7:19157248..19157268,-!p1@TWIST1!1.91!211.21!TWIST1;;chr20:55204351..55204377,+!p1@TFAP2C!1.80!78.22!TFAP2C;;chr9:132427883..132427951,+!p2@PRRX2!1.68!46.93!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.60!50.06!PRRX2;;chr3:147127142..147127168,+!p1@ZIC1!1.51!31.29!ZIC1;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.42!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!150.19!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.43!34.42!PRDM8;;chr1:170633348..170633399,+!p2@PRRX1!1.36!29.73!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.33!20.34!RUNX1T1;;chr3:147127177..147127194,+!p2@ZIC1!1.30!18.77!ZIC1;;chr8:93074848..93074871,-!p3@RUNX1T1!1.26!17.21!RUNX1T1;;chr20:39317868..39317884,-!p1@MAFB!1.25!195.56!MAFB;;chr1:170633262..170633285,+!p3@PRRX1!1.24!18.77!PRRX1;;chr12:53614115..53614154,-!p1@RARG!1.22!81.35!RARG;;chr12:54778471..54778528,-!p1@ZNF385A!1.22!15.64!ZNF385A;;chr5:72744594..72744609,-!p1@FOXD1!1.20!67.27!FOXD1;;chr14:24837368..24837401,+!p1@NFATC4!1.20!34.42!NFATC4;;chr15:83953397..83953425,-!p1@BNC1!1.20!17.21!BNC1;;chr12:48298765..48298783,-!p2@VDR!1.18!29.73!VDR;;chr3:147139053..147139112,+!p5@ZIC1!1.18!14.08!ZIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.14!21.90!CREB3L1;;chr8:116673894..116673913,-!p12@TRPS1!1.13!12.52!TRPS1;;chr3:141121871..141121885,+!p13@ZBTB38!1.13!12.52!ZBTB38;;chr6:45296048..45296082,+!p1@RUNX2!1.12!14.08!RUNX2;;chr5:321810..321877,+!p1@AHRR!1.11!37.55!AHRR;;chr11:65686732..65686756,+!p2@DRAP1!1.08!46.93!DRAP1;;chr5:134369879..134369898,-!p2@PITX1!1.08!10.95!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.08!10.95!IRX2;;chrY:21906594..21906622,-!p1@KDM5D!1.08!10.95!KDM5D;;chr2:119605056..119605071,-!p10@EN1!1.08!10.95!EN1;;chr1:170632683..170632696,+!p12@PRRX1!1.08!10.95!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.77!DRAP1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.04!125.16!ZC3H12A;;chr5:92918956..92918969,+!p4@NR2F1!1.04!10.95!NR2F1;;chr8:72756637..72756664,-!p3@MSC!1.03!10.95!MSC;;chr19:13134772..13134822,+!p2@NFIX!1.02!14.08!NFIX;;chr1:170632310..170632321,+!p15@PRRX1!1.02!9.39!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.01!15.64!TCF12;;chr19:31840130..31840160,-!p2@TSHZ3!1.00!14.08!TSHZ3;;chr5:134369905..134369972,-!p1@PITX1!1.00!14.08!PITX1;;chr9:35732647..35732678,+!p2@CREB3!0.98!48.50!CREB3;;chr12:115121962..115121987,-!p1@TBX3!0.97!71.97!TBX3;;chr8:72756267..72756296,-!p4@MSC!0.97!12.52!MSC;;chr3:141121847..141121868,+!p5@ZBTB38!0.96!12.52!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.95!10.95!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!0.95!7.82!CREB3L1;;chr1:170632477..170632506,+!p6@PRRX1!0.95!7.82!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.95!7.82!PRRX1;;chr16:51185172..51185197,-!p1@SALL1!0.95!7.82!SALL1;;chr2:119605253..119605264,-!p5@EN1!0.95!7.82!EN1;;chr2:177001290..177001315,+!p1@HOXD3!0.95!7.82!HOXD3;;chr3:25469815..25469866,+!p3@RARB!0.95!7.82!RARB;;chr11:615570..615721,-!p2@IRF7!0.94!15.64!IRF7;;chr3:25469724..25469773,+!p1@RARB!0.93!10.95!RARB;;chr6:10415276..10415341,-!p2@TFAP2A!0.93!9.39!TFAP2A;;chr11:65687362..65687436,+!p3@DRAP1!0.92!34.42!DRAP1;;chr7:42276787..42276815,-!p1@GLI3!0.92!20.34!GLI3;;chr3:24536253..24536328,-!p1@THRB!0.92!14.08!THRB;;chr11:65687222..65687240,+!p7@DRAP1!0.92!9.39!DRAP1;;chr6:36355513..36355578,-!p2@ETV7!0.92!9.39!ETV7;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.82!SHOX2;;chr12:48298785..48298828,-!p1@VDR!0.91!39.11!VDR;;chr2:19558373..19558392,-!p1@OSR1!0.91!20.34!OSR1;;chr7:14028488..14028516,-!p2@ETV1!0.91!7.82!ETV1;;chr8:72756667..72756736,-!p2@MSC!0.89!10.95!MSC;;chr11:65686776..65686787,+!p9@DRAP1!0.88!7.82!DRAP1;;chr8:145159846..145159889,+!p6@MAF1!0.87!9.39!MAF1;;chr5:72744562..72744573,-!p3@FOXD1!0.86!7.82!FOXD1;;chr2:119605374..119605377,-!p7@EN1!0.86!6.26!EN1;;chr2:176994919..176994931,+!p2@HOXD8!0.86!6.26!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.86!6.26!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.86!6.26!RARB;;chr1:170632028..170632043,+!p20@PRRX1!0.86!6.26!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.86!6.26!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.86!6.26!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.85!143.93!AEBP1;;chr2:28616337..28616355,+!p2@FOSL2!0.85!115.77!FOSL2;;chr8:49833948..49833973,-!p2@SNAI2!0.85!40.68!SNAI2;;chr4:4861385..4861398,+!p1@MSX1!0.85!18.77!MSX1;;chr7:19157043..19157088,-!p2@TWIST1!0.84!15.64!TWIST1;;chr8:72756213..72756243,-!p5@MSC!0.84!7.82!MSC;;chr8:49833978..49833996,-!p1@SNAI2!0.83!126.72!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.82!15.64!RARG;;chr2:200323414..200323455,-!p1@SATB2!0.82!12.52!SATB2;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.26!HOXB2;;chr2:191878874..191878938,-!p1@STAT1!0.81!319.16!STAT1;;chr10:77161133..77161176,-!p3@ZNF503!0.81!12.52!ZNF503;;chr5:174151553..174151610,+!p1@MSX2!0.81!9.39!MSX2;;chr9:4300004..4300015,-!p6@GLIS3!0.81!6.26!GLIS3;;chr5:72743793..72743855,-!p4@FOXD1!0.79!6.26!FOXD1;;chr7:14028743..14028799,-!p3@ETV1!0.77!6.26!ETV1;;chr19:42636586..42636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|expression_enrichment_score=chr2:119605214..119605230,-!p1@EN1!1.98!95.43!EN1;;chr7:19157248..19157268,-!p1@TWIST1!1.91!211.21!TWIST1;;chr20:55204351..55204377,+!p1@TFAP2C!1.80!78.22!TFAP2C;;chr9:132427883..132427951,+!p2@PRRX2!1.68!46.93!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.60!50.06!PRRX2;;chr3:147127142..147127168,+!p1@ZIC1!1.51!31.29!ZIC1;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.42!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!150.19!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.43!34.42!PRDM8;;chr1:170633348..170633399,+!p2@PRRX1!1.36!29.73!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.33!20.34!RUNX1T1;;chr3:147127177..147127194,+!p2@ZIC1!1.30!18.77!ZIC1;;chr8:93074848..93074871,-!p3@RUNX1T1!1.26!17.21!RUNX1T1;;chr20:39317868..39317884,-!p1@MAFB!1.25!195.56!MAFB;;chr1:170633262..170633285,+!p3@PRRX1!1.24!18.77!PRRX1;;chr12:53614115..53614154,-!p1@RARG!1.22!81.35!RARG;;chr12:54778471..54778528,-!p1@ZNF385A!1.22!15.64!ZNF385A;;chr5:72744594..72744609,-!p1@FOXD1!1.20!67.27!FOXD1;;chr14:24837368..24837401,+!p1@NFATC4!1.20!34.42!NFATC4;;chr15:83953397..83953425,-!p1@BNC1!1.20!17.21!BNC1;;chr12:48298765..48298783,-!p2@VDR!1.18!29.73!VDR;;chr3:147139053..147139112,+!p5@ZIC1!1.18!14.08!ZIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.14!21.90!CREB3L1;;chr8:116673894..116673913,-!p12@TRPS1!1.13!12.52!TRPS1;;chr3:141121871..141121885,+!p13@ZBTB38!1.13!12.52!ZBTB38;;chr6:45296048..45296082,+!p1@RUNX2!1.12!14.08!RUNX2;;chr5:321810..321877,+!p1@AHRR!1.11!37.55!AHRR;;chr11:65686732..65686756,+!p2@DRAP1!1.08!46.93!DRAP1;;chr5:134369879..134369898,-!p2@PITX1!1.08!10.95!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.08!10.95!IRX2;;chrY:21906594..21906622,-!p1@KDM5D!1.08!10.95!KDM5D;;chr2:119605056..119605071,-!p10@EN1!1.08!10.95!EN1;;chr1:170632683..170632696,+!p12@PRRX1!1.08!10.95!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.77!DRAP1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.04!125.16!ZC3H12A;;chr5:92918956..92918969,+!p4@NR2F1!1.04!10.95!NR2F1;;chr8:72756637..72756664,-!p3@MSC!1.03!10.95!MSC;;chr19:13134772..13134822,+!p2@NFIX!1.02!14.08!NFIX;;chr1:170632310..170632321,+!p15@PRRX1!1.02!9.39!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.01!15.64!TCF12;;chr19:31840130..31840160,-!p2@TSHZ3!1.00!14.08!TSHZ3;;chr5:134369905..134369972,-!p1@PITX1!1.00!14.08!PITX1;;chr9:35732647..35732678,+!p2@CREB3!0.98!48.50!CREB3;;chr12:115121962..115121987,-!p1@TBX3!0.97!71.97!TBX3;;chr8:72756267..72756296,-!p4@MSC!0.97!12.52!MSC;;chr3:141121847..141121868,+!p5@ZBTB38!0.96!12.52!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.95!10.95!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!0.95!7.82!CREB3L1;;chr1:170632477..170632506,+!p6@PRRX1!0.95!7.82!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.95!7.82!PRRX1;;chr16:51185172..51185197,-!p1@SALL1!0.95!7.82!SALL1;;chr2:119605253..119605264,-!p5@EN1!0.95!7.82!EN1;;chr2:177001290..177001315,+!p1@HOXD3!0.95!7.82!HOXD3;;chr3:25469815..25469866,+!p3@RARB!0.95!7.82!RARB;;chr11:615570..615721,-!p2@IRF7!0.94!15.64!IRF7;;chr3:25469724..25469773,+!p1@RARB!0.93!10.95!RARB;;chr6:10415276..10415341,-!p2@TFAP2A!0.93!9.39!TFAP2A;;chr11:65687362..65687436,+!p3@DRAP1!0.92!34.42!DRAP1;;chr7:42276787..42276815,-!p1@GLI3!0.92!20.34!GLI3;;chr3:24536253..24536328,-!p1@THRB!0.92!14.08!THRB;;chr11:65687222..65687240,+!p7@DRAP1!0.92!9.39!DRAP1;;chr6:36355513..36355578,-!p2@ETV7!0.92!9.39!ETV7;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.82!SHOX2;;chr12:48298785..48298828,-!p1@VDR!0.91!39.11!VDR;;chr2:19558373..19558392,-!p1@OSR1!0.91!20.34!OSR1;;chr7:14028488..14028516,-!p2@ETV1!0.91!7.82!ETV1;;chr8:72756667..72756736,-!p2@MSC!0.89!10.95!MSC;;chr11:65686776..65686787,+!p9@DRAP1!0.88!7.82!DRAP1;;chr8:145159846..145159889,+!p6@MAF1!0.87!9.39!MAF1;;chr5:72744562..72744573,-!p3@FOXD1!0.86!7.82!FOXD1;;chr2:119605374..119605377,-!p7@EN1!0.86!6.26!EN1;;chr2:176994919..176994931,+!p2@HOXD8!0.86!6.26!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.86!6.26!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.86!6.26!RARB;;chr1:170632028..170632043,+!p20@PRRX1!0.86!6.26!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.86!6.26!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.86!6.26!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.85!143.93!AEBP1;;chr2:28616337..28616355,+!p2@FOSL2!0.85!115.77!FOSL2;;chr8:49833948..49833973,-!p2@SNAI2!0.85!40.68!SNAI2;;chr4:4861385..4861398,+!p1@MSX1!0.85!18.77!MSX1;;chr7:19157043..19157088,-!p2@TWIST1!0.84!15.64!TWIST1;;chr8:72756213..72756243,-!p5@MSC!0.84!7.82!MSC;;chr8:49833978..49833996,-!p1@SNAI2!0.83!126.72!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.82!15.64!RARG;;chr2:200323414..200323455,-!p1@SATB2!0.82!12.52!SATB2;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.26!HOXB2;;chr2:191878874..191878938,-!p1@STAT1!0.81!319.16!STAT1;;chr10:77161133..77161176,-!p3@ZNF503!0.81!12.52!ZNF503;;chr5:174151553..174151610,+!p1@MSX2!0.81!9.39!MSX2;;chr9:4300004..4300015,-!p6@GLIS3!0.81!6.26!GLIS3;;chr5:72743793..72743855,-!p4@FOXD1!0.79!6.26!FOXD1;;chr7:14028743..14028799,-!p3@ETV1!0.77!6.26!ETV1;;chr19:42636586..42636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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000346;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor1.CNhs12501.11271-116H2.hg38.nobarcode.ctss.bed.gz
|id=FF:11271-116H2
|id=FF:11271-116H2
|is_a=EFO:0002091;;FF:0000071
|is_a=EFO:0002091;;FF:0000071
|is_obsolete=
|is_obsolete=
|library_id=CNhs12501
|library_id_phase_based=2:CNhs12501
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11271
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.ACAGTG.11271
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11271
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ACAGTG.11271
|name=Hair Follicle Dermal Papilla Cells, donor1
|name=Hair Follicle Dermal Papilla Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12501,LSID916,release011,COMPLETED
|profile_hcage=CNhs12501,LSID916,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10013,,,
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_box=116
|rna_catalog_number=CA602-R10a
|rna_catalog_number=CA602-R10a
Line 57: Line 82:
|rna_tube_id=116H2
|rna_tube_id=116H2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.ACAGTG
|sample_age=28
|sample_age=28
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 79: Line 106:
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|top_motifs=ZNF238:2.75071826586;HES1:1.88002808725;TFAP4:1.69174411471;NFATC1..3:1.36176207036;ALX4:1.30903999586;TBP:1.28419858181;SRF:1.24349069938;ESR1:1.10674527037;NFIX:1.10539347269;ESRRA:1.06934040363;GTF2A1,2:1.06150622715;RXR{A,B,G}:1.03915380791;TP53:1.03765088022;EN1,2:1.0369025851;NKX3-2:1.03625714379;TLX1..3_NFIC{dimer}:1.00780256005;TFAP2{A,C}:0.969121017354;GFI1B:0.934596278025;PBX1:0.866637464481;POU2F1..3:0.851554949268;NANOG{mouse}:0.792865749329;IRF1,2:0.750016870671;PPARG:0.686737514801;HOX{A5,B5}:0.65683995811;HMX1:0.650608562406;ATF6:0.642946257236;CRX:0.633892869209;NFE2L2:0.61910680289;XBP1:0.611824726802;PAX1,9:0.56787937882;IKZF1:0.566348996629;MYBL2:0.562561526888;GCM1,2:0.550756984038;ZBTB6:0.544138980946;IRF7:0.542353790118;TFCP2:0.527499573829;LEF1_TCF7_TCF7L1,2:0.513353509002;TEAD1:0.504720559017;GLI1..3:0.490431759449;HAND1,2:0.483620750169;NR1H4:0.469693844134;AHR_ARNT_ARNT2:0.463113705388;SOX17:0.457618662886;PRRX1,2:0.446486809518;YY1:0.425376555318;MTF1:0.41193625877;MAFB:0.386172646006;NHLH1,2:0.380823918662;HIF1A:0.375126454921;NKX3-1:0.36219702271;GTF2I:0.358619461711;HLF:0.327508067372;TBX4,5:0.307749080977;HSF1,2:0.289353993918;RXRA_VDR{dimer}:0.28730535983;PATZ1:0.281586824021;ZNF384:0.27430420748;PAX6:0.264229936652;STAT2,4,6:0.254620798476;KLF4:0.250456265698;GFI1:0.238753018553;NFKB1_REL_RELA:0.230272472724;CDC5L:0.213385505191;BACH2:0.209229084399;NFE2L1:0.203902536917;GZF1:0.203393844861;UFEwm:0.202003696214;FOS_FOS{B,L1}_JUN{B,D}:0.19750385861;NR3C1:0.189020994988;PAX3,7:0.179367537022;HNF1A:0.174694541645;MZF1:0.146848194676;NFE2:0.128256644306;RUNX1..3:0.104373166584;TLX2:0.104151759584;EBF1:0.0980244613669;PAX2:0.094323632693;STAT5{A,B}:0.0728257742596;MTE{core}:0.0583446210481;JUN:0.0286103609897;FOXA2:0.0217224073074;HOX{A6,A7,B6,B7}:0.00627261022639;REST:-0.00135614252819;HOXA9_MEIS1:-0.00153267647567;PAX8:-0.00166461786133;ZNF148:-0.0226936264316;MAZ:-0.0252584579961;MYFfamily:-0.0406800182393;ETS1,2:-0.0446445051658;XCPE1{core}:-0.054108551728;TAL1_TCF{3,4,12}:-0.0546156418962;HNF4A_NR2F1,2:-0.0600324711508;TFAP2B:-0.0625893851153;CEBPA,B_DDIT3:-0.0703563727195;DBP:-0.087228082878;ZNF423:-0.0888685796354;SMAD1..7,9:-0.0908581379339;SPZ1:-0.0962518498387;AR:-0.106369827078;LHX3,4:-0.125496617072;NFIL3:-0.136174914425;ZIC1..3:-0.154571603532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.154865149968;MEF2{A,B,C,D}:-0.158853303347;TFDP1:-0.165123480017;NANOG:-0.16567939464;OCT4_SOX2{dimer}:-0.167980362106;DMAP1_NCOR{1,2}_SMARC:-0.17844245253;ALX1:-0.185921842906;TOPORS:-0.218228411927;NKX2-3_NKX2-5:-0.219349102698;NR5A1,2:-0.230147887645;SOX5:-0.257688353886;NKX2-2,8:-0.258941911333;bHLH_family:-0.269678974987;PRDM1:-0.271300633528;FOXO1,3,4:-0.278219198401;MYB:-0.292802347055;RFX1:-0.294043337862;SPIB:-0.299230470914;HOX{A4,D4}:-0.30612323178;FOSL2:-0.327316700823;PDX1:-0.351170948706;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.352579456596;POU3F1..4:-0.364241829454;HIC1:-0.364878351144;SOX{8,9,10}:-0.378349799059;EVI1:-0.392733149965;ELF1,2,4:-0.395162321724;RREB1:-0.395314860222;ATF5_CREB3:-0.408992133081;TGIF1:-0.430744617882;FOXL1:-0.463169008624;SPI1:-0.474085825699;FOXP3:-0.489640900722;AIRE:-0.490403453017;NFY{A,B,C}:-0.500167386257;HMGA1,2:-0.510020036235;FOX{D1,D2}:-0.517384586497;POU6F1:-0.539120380232;ZNF143:-0.539282905191;MED-1{core}:-0.546126612435;RORA:-0.56050780058;GATA6:-0.572397320593;EP300:-0.576990376743;POU5F1:-0.578470563492;STAT1,3:-0.579675506349;PITX1..3:-0.598148692213;SP1:-0.599152774502;FOXM1:-0.610129664721;GATA4:-0.625242879622;E2F1..5:-0.658812370336;ELK1,4_GABP{A,B1}:-0.692604645188;NR6A1:-0.694599917216;SNAI1..3:-0.699710686439;NKX2-1,4:-0.717448961006;RFX2..5_RFXANK_RFXAP:-0.726904239781;RBPJ:-0.752644516753;ONECUT1,2:-0.759352346622;VSX1,2:-0.766237429497;HBP1_HMGB_SSRP1_UBTF:-0.770641589493;POU1F1:-0.776656705571;ATF2:-0.807123340062;CUX2:-0.824664222548;PAX4:-0.837392899444;ZFP161:-0.855356488289;ADNP_IRX_SIX_ZHX:-0.862062219497;ZEB1:-0.862972092305;TEF:-0.959832933219;SOX2:-0.962186051765;FOXN1:-0.985247816428;CDX1,2,4:-1.01639983303;LMO2:-1.01671386533;ATF4:-1.03307690778;BPTF:-1.06051145428;NRF1:-1.07117142899;CREB1:-1.07472210419;FOX{F1,F2,J1}:-1.10281983485;EGR1..3:-1.11200004448;MYOD1:-1.12023909517;SREBF1,2:-1.17455906984;FOXQ1:-1.18786197015;PAX5:-1.21960035744;IKZF2:-1.24211973808;NKX6-1,2:-1.2617134861;ZBTB16:-1.35410323246;T:-1.56953671449;FOXP1:-1.59822400634;FOXD3:-1.60262790406;ARID5B:-1.62781776477;BREu{core}:-1.63261044523;FOX{I1,J2}:-1.71650476799
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11271-116H2;search_select_hide=table117:FF:11271-116H2
}}
}}

Latest revision as of 16:29, 3 June 2020

Name:Hair Follicle Dermal Papilla Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12501
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuehair follicle
dev stage28 years old adult
sexmale
age28
cell typehair follicle, dermal papilla cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1648
catalog numberCA602-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005918
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12501 CAGE DRX008296 DRR009168
Accession ID Hg19

Library idBAMCTSS
CNhs12501 DRZ000593 DRZ001978
Accession ID Hg38

Library idBAMCTSS
CNhs12501 DRZ011943 DRZ013328
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005918
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.ACAGTG sRNA-Seq DRX037206 DRR041572
Accession ID Hg19

Library idBAMCTSS
SRhi10013.ACAGTG DRZ007214


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.156
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.136
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.755
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.22
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.361
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.755
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.378
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.451
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0202
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.36
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.409
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.409
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12501

Jaspar motifP-value
MA0002.28.44311e-4
MA0003.10.122
MA0004.10.808
MA0006.10.241
MA0007.10.221
MA0009.10.676
MA0014.10.628
MA0017.10.234
MA0018.20.00757
MA0019.10.493
MA0024.13.19393e-4
MA0025.10.126
MA0027.10.319
MA0028.10.0533
MA0029.10.625
MA0030.10.155
MA0031.10.0678
MA0035.20.168
MA0038.10.489
MA0039.20.379
MA0040.10.799
MA0041.10.432
MA0042.10.7
MA0043.12.23435e-4
MA0046.10.426
MA0047.20.911
MA0048.10.794
MA0050.13.83697e-8
MA0051.11.84274e-6
MA0052.10.664
MA0055.10.864
MA0057.10.465
MA0058.10.637
MA0059.10.368
MA0060.10.22
MA0061.10.0506
MA0062.24.53733e-4
MA0065.20.0264
MA0066.10.105
MA0067.10.174
MA0068.10.347
MA0069.10.513
MA0070.10.931
MA0071.10.769
MA0072.10.672
MA0073.10.466
MA0074.10.351
MA0076.10.0128
MA0077.10.825
MA0078.10.814
MA0079.20.732
MA0080.20.11
MA0081.10.422
MA0083.10.00236
MA0084.10.951
MA0087.10.854
MA0088.10.12
MA0090.10.0468
MA0091.10.0192
MA0092.10.0556
MA0093.10.708
MA0099.24.87114e-5
MA0100.10.453
MA0101.10.0868
MA0102.20.603
MA0103.10.323
MA0104.20.498
MA0105.10.00937
MA0106.10.236
MA0107.10.0356
MA0108.29.74956e-6
MA0111.10.555
MA0112.24.56406e-4
MA0113.10.0631
MA0114.10.118
MA0115.10.84
MA0116.10.02
MA0117.10.992
MA0119.10.0775
MA0122.10.608
MA0124.10.739
MA0125.10.458
MA0131.10.109
MA0135.10.414
MA0136.10.0998
MA0137.20.904
MA0138.20.19
MA0139.10.353
MA0140.10.441
MA0141.10.515
MA0142.10.0276
MA0143.10.532
MA0144.10.248
MA0145.10.176
MA0146.10.144
MA0147.10.606
MA0148.10.51
MA0149.10.0902
MA0150.10.126
MA0152.10.075
MA0153.10.385
MA0154.10.0147
MA0155.10.136
MA0156.10.434
MA0157.10.792
MA0159.10.255
MA0160.10.578
MA0162.10.0298
MA0163.10.00293
MA0164.10.801
MA0258.10.0124
MA0259.10.314



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12501

Novel motifP-value
10.315
100.828
1000.879
1010.895
1020.354
1030.0962
1040.365
1050.559
1060.00476
1070.0298
1080.791
1090.0926
110.0802
1100.205
1110.699
1120.133
1130.359
1140.115
1150.436
1160.0911
1170.451
1180.864
1190.284
120.874
1200.332
1210.426
1220.477
1230.222
1240.269
1250.957
1260.285
1270.0434
1280.00555
1290.38
130.521
1300.0774
1310.697
1320.82
1330.548
1340.137
1350.0279
1360.355
1370.477
1380.767
1390.436
140.86
1400.991
1410.397
1420.0574
1430.0305
1440.519
1450.162
1460.156
1470.362
1480.471
1490.0357
150.48
1500.173
1510.582
1520.0948
1530.803
1540.668
1550.265
1560.823
1570.642
1580.342
1590.451
160.182
1600.0961
1610.653
1620.294
1630.929
1640.851
1650.437
1660.321
1670.962
1680.257
1690.0227
170.151
180.0795
190.0224
20.165
200.464
210.461
220.138
230.117
240.44
250.964
260.0214
270.241
280.942
290.277
30.461
300.155
310.836
325.48849e-5
330.621
340.304
350.516
360.86
370.0669
380.543
390.75
40.725
400.565
410.144
420.607
430.12
440.484
450.165
460.071
470.295
480.307
490.251
50.452
500.529
510.646
520.169
530.795
540.716
550.531
560.287
570.288
580.534
590.0362
60.666
600.0932
610.686
620.203
630.178
640.309
650.0666
660.757
670.688
680.0793
690.938
70.678
700.0527
710.112
720.347
730.0991
740.536
750.497
760.819
770.0441
780.904
790.0234
80.103
800.251
810.666
820.412
830.0972
840.533
850.0368
860.365
870.139
880.457
890.061
90.0911
900.129
910.701
920.202
930.93
940.189
950.378
960.477
970.52
980.246
990.225



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12501


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002559 (hair follicle cell)
0000346 (hair follicle dermal papilla cell)
1000428 (stem cell of epidermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0000412 (dermal papilla)
0002067 (dermis)
0001992 (papillary layer of dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000071 (human hair follicle dermal papilla cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)

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