FF:11547-120B8: Difference between revisions

Latest revision as of 18:08, 4 June 2020

Name:	Mesenchymal Stem Cells - amniotic membrane, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11349
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amnion
dev stage	fetus
sex	female
age	?
cell type	mesenchymal stem cell
cell line	NA
company	CET
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004680

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11349		CAGE		DRX008349		DRR009221

Accession ID Hg19

Library id		BAM		CTSS
CNhs11349		DRZ000646		DRZ002031

Accession ID Hg38

Library id		BAM		CTSS
CNhs11349		DRZ011996		DRZ013381

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004680

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10002.CAGATC		sRNA-Seq		DRX036994		DRR041360

Accession ID Hg19

Library id		BAM		CTSS
SRhi10002.CAGATC		DRZ007002

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0418
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.216
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.56
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.185
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0882
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0903
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.255
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0933
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.633
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.579
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.255
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.329
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0501
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.185
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.285
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.065
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.255
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.563
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.222
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11349

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0821
MA0003.1	MA0003.1	0.26
MA0004.1	MA0004.1	0.589
MA0006.1	MA0006.1	0.0844
MA0007.1	MA0007.1	0.473
MA0009.1	MA0009.1	0.423
MA0014.1	MA0014.1	0.0932
MA0017.1	MA0017.1	0.202
MA0018.2	MA0018.2	4.28326e-7
MA0019.1	MA0019.1	0.449
MA0024.1	MA0024.1	3.65098e-6
MA0025.1	MA0025.1	0.00313
MA0027.1	MA0027.1	0.841
MA0028.1	MA0028.1	0.13
MA0029.1	MA0029.1	0.665
MA0030.1	MA0030.1	0.196
MA0031.1	MA0031.1	0.0482
MA0035.2	MA0035.2	0.143
MA0038.1	MA0038.1	0.15
MA0039.2	MA0039.2	0.00981
MA0040.1	MA0040.1	0.937
MA0041.1	MA0041.1	0.66
MA0042.1	MA0042.1	0.727
MA0043.1	MA0043.1	2.44866e-5
MA0046.1	MA0046.1	0.623
MA0047.2	MA0047.2	0.0575
MA0048.1	MA0048.1	0.898
MA0050.1	MA0050.1	0.872
MA0051.1	MA0051.1	0.734
MA0052.1	MA0052.1	0.336
MA0055.1	MA0055.1	0.471
MA0057.1	MA0057.1	0.308
MA0058.1	MA0058.1	0.582
MA0059.1	MA0059.1	0.238
MA0060.1	MA0060.1	3.15846e-8
MA0061.1	MA0061.1	0.0186
MA0062.2	MA0062.2	1.6444e-5
MA0065.2	MA0065.2	0.0969
MA0066.1	MA0066.1	0.868
MA0067.1	MA0067.1	0.0679
MA0068.1	MA0068.1	0.0693
MA0069.1	MA0069.1	0.217
MA0070.1	MA0070.1	0.887
MA0071.1	MA0071.1	0.933
MA0072.1	MA0072.1	0.883
MA0073.1	MA0073.1	0.65
MA0074.1	MA0074.1	0.782
MA0076.1	MA0076.1	0.0584
MA0077.1	MA0077.1	0.57
MA0078.1	MA0078.1	0.89
MA0079.2	MA0079.2	0.767
MA0080.2	MA0080.2	2.0048e-8
MA0081.1	MA0081.1	0.0313
MA0083.1	MA0083.1	7.9816e-9
MA0084.1	MA0084.1	0.782
MA0087.1	MA0087.1	0.952
MA0088.1	MA0088.1	0.171
MA0090.1	MA0090.1	8.00162e-6
MA0091.1	MA0091.1	0.112
MA0092.1	MA0092.1	0.314
MA0093.1	MA0093.1	0.733
MA0099.2	MA0099.2	0.0797
MA0100.1	MA0100.1	0.18
MA0101.1	MA0101.1	0.00283
MA0102.2	MA0102.2	0.174
MA0103.1	MA0103.1	0.0058
MA0104.2	MA0104.2	0.00236
MA0105.1	MA0105.1	0.323
MA0106.1	MA0106.1	0.171
MA0107.1	MA0107.1	0.00472
MA0108.2	MA0108.2	0.262
MA0111.1	MA0111.1	0.256
MA0112.2	MA0112.2	0.163
MA0113.1	MA0113.1	0.624
MA0114.1	MA0114.1	0.14
MA0115.1	MA0115.1	0.0263
MA0116.1	MA0116.1	0.0784
MA0117.1	MA0117.1	0.467
MA0119.1	MA0119.1	0.591
MA0122.1	MA0122.1	0.403
MA0124.1	MA0124.1	0.933
MA0125.1	MA0125.1	0.966
MA0131.1	MA0131.1	0.279
MA0135.1	MA0135.1	0.452
MA0136.1	MA0136.1	2.1118e-9
MA0137.2	MA0137.2	0.0394
MA0138.2	MA0138.2	0.98
MA0139.1	MA0139.1	0.414
MA0140.1	MA0140.1	0.153
MA0141.1	MA0141.1	0.11
MA0142.1	MA0142.1	0.0404
MA0143.1	MA0143.1	0.662
MA0144.1	MA0144.1	0.172
MA0145.1	MA0145.1	0.32
MA0146.1	MA0146.1	0.734
MA0147.1	MA0147.1	0.00172
MA0148.1	MA0148.1	0.281
MA0149.1	MA0149.1	0.162
MA0150.1	MA0150.1	0.0857
MA0152.1	MA0152.1	0.071
MA0153.1	MA0153.1	0.508
MA0154.1	MA0154.1	0.514
MA0155.1	MA0155.1	0.15
MA0156.1	MA0156.1	9.74308e-8
MA0157.1	MA0157.1	0.142
MA0159.1	MA0159.1	0.782
MA0160.1	MA0160.1	0.0721
MA0162.1	MA0162.1	0.141
MA0163.1	MA0163.1	0.989
MA0164.1	MA0164.1	0.952
MA0258.1	MA0258.1	0.437
MA0259.1	MA0259.1	0.0193

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11349

Novel motif	Logo	P-value
1	1	0.115
10	10	0.616
100	100	0.257
101	101	0.615
102	102	0.0823
103	103	0.704
104	104	0.752
105	105	0.181
106	106	0.458
107	107	0.399
108	108	0.958
109	109	0.919
11	11	0.461
110	110	0.92
111	111	0.472
112	112	0.542
113	113	0.656
114	114	0.576
115	115	0.0309
116	116	0.0888
117	117	0.32
118	118	0.441
119	119	0.439
12	12	0.326
120	120	0.288
121	121	0.739
122	122	0.254
123	123	0.0045
124	124	0.321
125	125	0.319
126	126	0.441
127	127	0.969
128	128	0.972
129	129	0.0893
13	13	0.0896
130	130	0.266
131	131	0.275
132	132	0.79
133	133	0.436
134	134	0.383
135	135	0.382
136	136	0.569
137	137	0.166
138	138	0.791
139	139	0.765
14	14	0.291
140	140	0.208
141	141	0.0541
142	142	0.805
143	143	0.655
144	144	0.826
145	145	0.217
146	146	0.555
147	147	0.111
148	148	0.343
149	149	0.0182
15	15	0.219
150	150	0.42
151	151	0.74
152	152	0.018
153	153	0.522
154	154	0.395
155	155	0.00686
156	156	0.598
157	157	0.637
158	158	0.0517
159	159	0.746
16	16	0.163
160	160	0.755
161	161	0.2
162	162	0.311
163	163	0.94
164	164	0.73
165	165	0.413
166	166	0.0486
167	167	0.812
168	168	0.919
169	169	0.142
17	17	0.94
18	18	0.287
19	19	0.0182
2	2	0.127
20	20	0.238
21	21	0.107
22	22	0.339
23	23	0.527
24	24	0.774
25	25	0.0763
26	26	0.292
27	27	0.342
28	28	0.382
29	29	0.813
3	3	0.524
30	30	0.151
31	31	0.692
32	32	2.95237e-7
33	33	0.28
34	34	0.41
35	35	0.733
36	36	0.0504
37	37	0.358
38	38	0.238
39	39	0.223
4	4	0.441
40	40	0.333
41	41	0.232
42	42	0.166
43	43	0.574
44	44	0.4
45	45	0.335
46	46	0.878
47	47	0.373
48	48	0.418
49	49	0.418
5	5	0.457
50	50	0.667
51	51	0.955
52	52	0.973
53	53	0.179
54	54	0.541
55	55	0.192
56	56	0.833
57	57	0.537
58	58	0.173
59	59	0.382
6	6	0.23
60	60	0.39
61	61	0.927
62	62	0.247
63	63	0.901
64	64	0.306
65	65	0.837
66	66	0.47
67	67	0.265
68	68	0.891
69	69	0.523
7	7	0.0661
70	70	0.756
71	71	0.977
72	72	0.872
73	73	0.0539
74	74	0.412
75	75	0.694
76	76	0.254
77	77	0.16
78	78	0.263
79	79	0.00404
8	8	0.72
80	80	0.271
81	81	0.863
82	82	0.358
83	83	0.0861
84	84	0.706
85	85	0.384
86	86	0.606
87	87	0.488
88	88	0.943
89	89	0.28
9	9	0.479
90	90	0.488
91	91	0.888
92	92	0.589
93	93	0.547
94	94	0.909
95	95	0.801
96	96	0.716
97	97	0.538
98	98	0.255
99	99	0.0413

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11349

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000276 human amniotic membrane cell- fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000276 (human amniotic membrane cell- fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008241
+|DRA_sample_Accession=CAGE@SAMD00004680
-|accession_numbers=CAGE;DRX008349;DRR009221;DRZ000646;DRZ002031
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004680
+|accession_numbers=CAGE;DRX008349;DRR009221;DRZ000646;DRZ002031;DRZ011996;DRZ013381
+|accession_numbers_RNASeq=sRNA-Seq;DRX036994;DRR041360;DRZ007002
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.79!60.10!HAND2;;chr15:96869255..96869291,+!p6@NR2F2!1.70!88.03!NR2F2;;chr2:176969228..176969260,+!p1@HOXD11!1.59!37.76!HOXD11;;chr7:27224795..27224840,-!p2@HOXA11!1.58!37.23!HOXA11;;chr15:96869222..96869251,+!p18@NR2F2!1.53!38.83!NR2F2;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!144.40!CREB3L1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.52!ZBED1;;chr7:27224842..27224872,-!p1@HOXA11!1.48!28.99!HOXA11;;chr5:92918919..92918942,+!p1@NR2F1!1.45!117.81!NR2F1;;chr15:96869165..96869183,+!p20@NR2F2!1.41!24.73!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!1.39!31.91!NR2F2;;chr15:96869292..96869320,+!p15@NR2F2!1.31!27.66!NR2F2;;chr3:138665937..138665968,-!p1@FOXL2!1.30!19.15!FOXL2;;chr2:176973498..176973524,+!p1@HOXD10!1.30!18.88!HOXD10;;chr15:96874145..96874166,+!p7@NR2F2!1.25!32.18!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!1.25!24.20!NR2F2;;chr2:176969179..176969226,+!p2@HOXD11!1.23!15.96!HOXD11;;chr5:92919100..92919135,+!p3@NR2F1!1.20!18.08!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!1.20!16.22!NR2F1;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.36!HAND2;;chr5:134369879..134369898,-!p2@PITX1!1.16!13.56!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.14!19.68!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.69!TFAP2A;;chr15:96874244..96874259,+!p5@NR2F2!1.13!30.05!NR2F2;;chr15:57511609..57511651,+!p2@TCF12!1.12!20.74!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.11!16.22!PRRX1;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.89!FOXF1;;chr15:96869206..96869220,+!p21@NR2F2!1.11!11.97!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!1.10!19.68!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.10!13.03!PRRX1;;chr3:138665760..138665772,-!p3@FOXL2!1.10!11.70!FOXL2;;chr2:239756671..239756732,+!p1@TWIST2!1.08!35.37!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.70!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.07!10.64!HOXA3;;chr3:128206762..128206781,-!p2@GATA2!1.06!65.15!GATA2;;chr17:1959369..1959388,+!p2@HIC1!1.06!28.19!HIC1;;chr6:10412600..10412637,-!p1@TFAP2A!1.05!17.02!TFAP2A;;chr10:119302232..119302265,+!p1@EMX2!1.05!10.11!EMX2;;chr5:92919375..92919438,+!p6@NR2F1!1.04!10.90!NR2F1;;chr10:119303078..119303169,+!p2@EMX2!1.04!9.84!EMX2;;chr2:239756739..239756755,+!p2@TWIST2!1.03!16.75!TWIST2;;chr12:115121962..115121987,-!p1@TBX3!1.02!80.31!TBX3;;chr15:42749722..42749739,-!p2@ZFP106!1.00!16.49!ZFP106;;chr3:128212033..128212051,-!p1@GATA2!1.00!9.04!GATA2;;chr3:141150883..141150961,+!p6@ZBTB38!0.99!8.78!ZBTB38;;chr17:59477233..59477263,+!p1@TBX2!0.97!26.59!TBX2;;chr10:28034739..28034756,-!p1@MKX!0.97!8.24!MKX;;chr5:92919068..92919082,+!p5@NR2F1!0.94!9.31!NR2F1;;chr7:44143925..44143970,+!p1@AEBP1!0.93!172.86!AEBP1;;chr15:96874012..96874042,+!p2@NR2F2!0.93!70.74!NR2F2;;chr7:27213893..27213954,-!p1@HOXA10!0.93!7.45!HOXA10;;chr3:138665702..138665729,-!p7@FOXL2!0.93!7.45!FOXL2;;chr3:141151009..141151033,+!p10@ZBTB38!0.91!7.18!ZBTB38;;chr5:92918768..92918783,+!p8@NR2F1!0.91!7.18!NR2F1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.18!HOXA9;;chr3:138665790..138665809,-!p4@FOXL2!0.90!6.91!FOXL2;;chr10:63809106..63809127,+!p1@ARID5B!0.89!95.47!ARID5B;;chr2:176981499..176981522,+!p2@HOXD10!0.88!6.65!HOXD10;;chr3:138665774..138665786,-!p5@FOXL2!0.88!6.65!FOXL2;;chr6:21593973..21593988,+!p1@SOX4!0.87!244.13!SOX4;;chr2:177001290..177001315,+!p1@HOXD3!0.87!6.38!HOXD3;;chr7:28220198..28220269,-!p2@JAZF1!0.86!59.84!JAZF1;;chr4:174451350..174451363,-!p3@HAND2!0.85!6.12!HAND2;;chr10:119302645..119302712,+!p3@EMX2!0.85!6.12!EMX2;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.84!PAWR;;chr8:99956662..99956684,+!p1@OSR2!0.84!9.31!OSR2;;chr6:10412392..10412409,-!p4@TFAP2A!0.84!6.91!TFAP2A;;chr2:176969097..176969109,+!p3@HOXD11!0.84!5.85!HOXD11;;chr3:141121847..141121868,+!p5@ZBTB38!0.83!9.04!ZBTB38;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.03!HIC1;;chr10:63809013..63809041,+!p3@ARID5B!0.82!33.24!ARID5B;;chr1:170633058..170633084,+!p5@PRRX1!0.82!5.58!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!0.81!10.37!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.79!13.03!NFATC4;;chr5:92918860..92918871,+!p10@NR2F1!0.78!5.58!NR2F1;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.05!MAFK;;chr10:28032421..28032494,-!p2@MKX!0.78!5.05!MKX;;chr12:115122318..115122331,-!p2@TBX3!0.78!5.05!TBX3;;chr12:80085120..80085156,-!p14@PAWR!0.78!5.05!PAWR;;chr3:138665969..138665993,-!p2@FOXL2!0.78!5.05!FOXL2;;chr16:51185172..51185197,-!p1@SALL1!0.78!5.05!SALL1;;chr15:96874216..96874236,+!p13@NR2F2!0.76!7.71!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!0.76!5.58!PRRX1;;chr15:96874927..96874938,+!p8@NR2F2!0.75!10.64!NR2F2;;chr17:59477275..59477286,+!p3@TBX2!0.74!6.12!TBX2;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.52!ZNF668;;chr5:92919452..92919496,+!p11@NR2F1!0.74!4.52!NR2F1;;chr19:31840130..31840160,-!p2@TSHZ3!0.73!7.18!TSHZ3;;chr12:115122005..115122016,-!p3@TBX3!0.73!5.32!TBX3;;chrX:66763856..66763896,+!p1@AR!0.72!6.38!AR;;chr5:92920456..92920488,+!p9@NR2F1!0.72!5.05!NR2F1;;chr2:176981526..176981543,+!p3@HOXD10!0.72!4.26!HOXD10;;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520amniotic%2520membrane%252c%2520donor1.CNhs11349.11547-120B8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11547-120B8
 |is_a=EFO:0002091;;FF:0000276
 |is_obsolete=
 |library_id=CNhs11349
-|library_id_phase_based=1:CNhs11349
+|library_id_phase_based=2:CNhs11349
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11547
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CAGATC.11547
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11547
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CAGATC.11547
 |name=Mesenchymal Stem Cells - amniotic membrane, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11349,LSID769,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10002,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=120B8
 |rna_weight_ug=57
+|rnaseq_library_id=SRhi10002.CAGATC
 |sample_age=?
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11547-120B8;search_select_hide=table117:FF:11547-120B8
 }}

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FF:11547-120B8: Difference between revisions

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Latest revision as of 18:08, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0