FF:11600-120H7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005904 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005904 | ||
|accession_numbers=CAGE;DRX008526;DRR009398;DRZ000823;DRZ002208;DRZ012173;DRZ013558 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037163;DRR041529;DRZ007171 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731 | |||
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|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000191 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.73!593.02!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.41!254.39!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.18!149.94!HES2;;chr17:7493405..7493419,-!p1@SOX15!1.99!97.71!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.80!94.34!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.75!55.60!ZBED2;;chr12:54785054..54785072,-!p4@ZNF385A!1.74!60.65!ZNF385A;;chr17:80797886..80797906,-!p1@ZNF750!1.67!45.49!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.66!90.97!SOX15;;chr11:34642612..34642646,+!p1@EHF!1.65!43.80!EHF;;chr6:10415276..10415341,-!p2@TFAP2A!1.64!52.23!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.39!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.60!38.75!TP63;;chr1:209979375..209979386,-!p4@IRF6!1.60!38.75!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.58!42.12!BNC1;;chr2:46524897..46524911,+!p2@EPAS1!1.44!72.44!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.39!23.59!GRHL3;;chr10:8096631..8096660,+!p1@GATA3!1.37!26.96!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.36!187.00!PPP1R13L;;chr12:66218255..66218304,+!p3@HMGA2!1.30!50.54!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.29!18.53!SOX7;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.85!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.21!15.16!ELF3;;chr10:8096772..8096787,+!p2@GATA3!1.18!16.85!GATA3;;chr1:201979703..201979721,+!p2@ELF3!1.16!13.48!ELF3;;chr3:111314230..111314241,-!p2@ZBED2!1.16!13.48!ZBED2;;chr4:57547454..57547469,-!p1@HOPX!1.16!13.48!HOPX;;chr6:10412576..10412599,-!p5@TFAP2A!1.16!13.48!TFAP2A;;chr1:37940170..37940190,+!p1@ZC3H12A!1.15!160.05!ZC3H12A;;chr13:73633131..73633149,+!p1@KLF5!1.12!129.72!KLF5;;chr11:65554563..65554576,+!p2@OVOL1!1.11!11.79!OVOL1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.79!IRX2;;chr7:27205106..27205134,-!p2@HOXA9!1.11!11.79!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.79!HOXB6;;chr17:80797863..80797874,-!p2@ZNF750!1.11!11.79!ZNF750;;chr8:49833948..49833973,-!p2@SNAI2!1.10!74.13!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.09!234.18!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!1.09!18.53!FOXQ1;;chr12:66218598..66218645,+!p2@HMGA2!1.06!48.86!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!1.05!28.64!POU2F2;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.11!HOXA9;;chr8:102504651..102504683,+!p1@GRHL2!1.05!10.11!GRHL2;;chr22:19748231..19748317,+!p1@TBX1!1.05!10.11!TBX1;;chr2:176969228..176969260,+!p1@HOXD11!1.05!10.11!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.11!HOXD8;;chr5:134369905..134369972,-!p1@PITX1!1.03!15.16!PITX1;;chr2:46524878..46524891,+!p3@EPAS1!1.02!16.85!EPAS1;;chr3:5021026..5021035,+!p5@BHLHE40!1.02!11.79!BHLHE40;;chr15:67418119..67418162,+!p5@SMAD3!1.00!10.11!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!0.97!8.42!HOXB6;;chr19:20278043..20278054,+!p2@ZNF486!0.97!8.42!ZNF486;;chr6:10413188..10413249,-!p7@TFAP2A!0.97!8.42!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.97!8.42!SPDEF;;chr11:65554528..65554546,+!p1@OVOL1!0.97!8.42!OVOL1;;chr19:45908286..45908291,-!p3@PPP1R13L!0.97!8.42!PPP1R13L;;chr1:209979449..209979460,-!p3@IRF6!0.97!8.42!IRF6;;chr1:935467..935484,-!p1@HES4!0.96!37.06!HES4;;chr12:66218212..66218244,+!p5@HMGA2!0.95!11.79!HMGA2;;chr8:128748308..128748324,+!p2@MYC!0.92!210.59!MYC;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.18!SOX9;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.02!TBX3;;chr17:38465413..38465438,+!p5@RARA!0.92!11.79!RARA;;chr17:45928443..45928473,-!p2@SP6!0.89!6.74!SP6;;chr11:129245526..129245553,+!p1@BARX2!0.89!6.74!BARX2;;chr12:54332608..54332636,+!p1@HOXC13!0.89!6.74!HOXC13;;chr14:38064429..38064486,-!p1@FOXA1!0.89!6.74!FOXA1;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.74!IRX2;;chr19:45908278..45908282,-!p5@PPP1R13L!0.89!6.74!PPP1R13L;;chr1:10856694..10856715,-!p3@CASZ1!0.89!6.74!CASZ1;;chr1:24645921..24645973,+!p2@GRHL3!0.89!6.74!GRHL3;;chr22:24093154..24093183,-!p2@ZNF70!0.89!6.74!ZNF70;;chr2:114036488..114036504,-!p1@PAX8!0.89!6.74!PAX8;;chr3:189507460..189507471,+!p3@TP63!0.89!6.74!TP63;;chrX:85403445..85403479,+!p2@DACH2!0.89!6.74!DACH2;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.74!KDM5D;;chr6:106546808..106546833,+!p3@PRDM1!0.88!8.42!PRDM1;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.64!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.84!67.39!ZNF219;;chr16:79633894..79633954,-!p3@MAF!0.84!11.79!MAF;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.79!HOXA1;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.42!HOXB7;;chr11:615570..615721,-!p2@IRF7!0.83!11.79!IRF7;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.17!SOX4;;chr17:38465441..38465481,+!p6@RARA!0.80!6.74!RARA;;chr6:21593973..21593988,+!p1@SOX4!0.78!200.48!SOX4;;chr1:154975258..154975330,+!p1@ZBTB7B!0.78!20.22!ZBTB7B;;chr16:86612320..86612394,+!p1@FOXL1!0.78!5.05!FOXL1;;chr17:36104873..36104903,-!p3@HNF1B!0.78!5.05!HNF1B;;chr17:45928521..45928539,-!p1@SP6!0.78!5.05!SP6;;chr17:46703687..46703740,-!p1@HOXB9!0.78!5.05!HOXB9;;chr17:46703942..46703964,-!p4@HOXB9!0.78!5.05!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.78!5.05!HOXB13;;chrY:21906623..21906637,-!p3@KDM5D!0.78!5.05!KDM5D;;chr10:8097321.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1!0.22!3.37!DMAP1;;chr12:19592493..19592524,+!p3@AEBP2!0.22!3.37!AEBP2;;chr3:48282536..48282586,+!p2@ZNF589!0.22!3.37!ZNF589;;chr5:174151553..174151610,+!p1@MSX2!0.22!1.68!MSX2;;chr6:1610293..1610310,+!p1@FOXC1!0.22!1.68!FOXC1;;chr6:21597600..21597664,+!p3@SOX4!0.22!1.68!SOX4;;chr7:137564372..137564394,-!p7@CREB3L2!0.22!1.68!CREB3L2;;chr15:31619871..31619884,+!p8@KLF13!0.22!1.68!KLF13;;chr15:96875657..96875760,+!p14@NR2F2!0.22!1.68!NR2F2;;chr16:30418894..30418909,+!p2@ZNF771!0.22!1.68!ZNF771;;chr16:68119440..68119480,+!p4@NFATC3!0.22!1.68!NFATC3;;chr18:47814010..47814021,-!p3@CXXC1!0.22!1.68!CXXC1;;chr19:35417798..35417842,+!p1@ZNF30!0.22!1.68!ZNF30;;chr12:80084279..80084293,-!p8@PAWR!0.22!1.68!PAWR;;chr1:151032922..151032951,+!p2@MLLT11!0.22!1.68!MLLT11;;chr1:204042723..204042784,+!p3@SOX13!0.22!1.68!SOX13;;chr5:137801160..137801176,+!p1@EGR1!0.21!146.57!EGR1;;chr8:145515263..145515299,+!p1@HSF1!0.21!106.14!HSF1;;chr2:74374995..74375055,-!p1@BOLA3!0.21!65.70!BOLA3;;chr15:31619013..31619095,+!p1@KLF13!0.21!33.69!KLF13;;chr17:40540484..40540537,-!p2@STAT3!0.21!13.48!STAT3;;chr12:53773944..53773993,+!p1@SP1!0.21!11.79!SP1;;chr1:27022164..27022220,+!p2@ARID1A!0.21!10.11!ARID1A;;chr7:150974206..150974255,-!p1@SMARCD3!0.21!8.42!SMARCD3;;chr3:39195037..39195069,-!p2@CSRNP1!0.21!8.42!CSRNP1;;chr3:39195075..39195088,-!p1@CSRNP1!0.21!8.42!CSRNP1;;chr10:31320777..31320834,-!p1@ZNF438!0.21!6.74!ZNF438;;chr19:19516464..19516492,+!p4@GATAD2A!0.21!6.74!GATAD2A;;chr19:21512202..21512225,-!p1@ZNF708!0.21!6.74!ZNF708;;chr1:149871114..149871134,+!p3@BOLA1!0.21!5.05!BOLA1;;chr19:56092252..56092287,-!p2@ZNF579!0.21!3.37!ZNF579;;chr19:56111639..56111668,+!p2@ZNF524!0.21!3.37!ZNF524;;chr21:36259445..36259519,-!p4@RUNX1!0.21!3.37!RUNX1;;chr6:43337255..43337329,-!p2@ZNF318!0.21!3.37!ZNF318;;chr7:148844581..148844606,+!p2@ZNF398!0.21!1.68!ZNF398;;chr7:74072193..74072218,+!p4@GTF2I!0.21!1.68!GTF2I;;chr17:7382891..7382905,-!p7@ZBTB4!0.21!1.68!ZBTB4;;chr19:50168861..50168873,-!p3@IRF3!0.21!1.68!IRF3;;chr20:50808252..50808264,-!p4@ZFP64!0.21!1.68!ZFP64;;chr10:114710060..114710069,+!p5@TCF7L2!0.21!1.68!TCF7L2;;chr10:43932553..43932571,+!p2@ZNF487P!0.21!1.68!ZNF487P;;chr11:67007445..67007459,+!p4@KDM2A!0.21!1.68!KDM2A;;chr11:67007522..67007533,+!p5@KDM2A!0.21!1.68!KDM2A;;chr12:11802932..11802949,+!p3@ETV6!0.21!1.68!ETV6;;chr13:45151509..45151539,-!p6@TSC22D1!0.21!1.68!TSC22D1;;chr1:8938766..8938774,-!p2@ENO1!0.20!99.40!ENO1;;chr17:46125707..46125746,+!p2@NFE2L1!0.20!75.81!NFE2L1;;chr2:28615716..28615733,+!p1@FOSL2!0.20!67.39!FOSL2;;chr17:7590797..7590815,-!p1@TP53!0.20!62.33!TP53;;chr7:100076765..100076861,-!p1@TSC22D4!0.20!48.86!TSC22D4;;chr20:30795511..30795562,-!p1@PLAGL2!0.20!25.27!PLAGL2;;chr22:42666624..42666673,-!p@chr22:42666624..42666673,-!0.20!15.16!TCF20;;chr18:51750839..51750885,-!p2@MBD2!0.20!13.48!MBD2;;chr6:32095968..32096032,-!p1@ATF6B!0.20!11.79!ATF6B;;chr8:48650697..48650708,-!p2@CEBPD!0.20!10.11!CEBPD;;chr16:30537839..30537929,-!p1@ZNF768!0.20!8.42!ZNF768;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.20!8.42!ZNF700;;chr19:58400372..58400411,-!p1@ZNF814!0.20!6.74!ZNF814;;chr19:1652555..1652568,-!p2@TCF3!0.20!5.05!TCF3;;chr21:40177892..40177903,+!p2@ETS2!0.20!5.05!ETS2;;chr5:137804484..137804498,+!p2@EGR1!0.20!5.05!EGR1;;chr16:30538079..30538124,-!p3@ZNF768!0.20!3.37!ZNF768;;chr19:4067039..4067064,-!p3@ZBTB7A!0.20!3.37!ZBTB7A;;chr15:67358111..67358122,+!p6@SMAD3!0.20!1.68!SMAD3;;chr19:12444440..12444455,-!p1@ZNF563!0.20!1.68!ZNF563;;chr19:20150029..20150078,-!p3@ZNF682!0.20!1.68!ZNF682;;chr6:170863498..170863514,+!p3@TBP!0.20!1.68!TBP;;chr6:45390002..45390023,+!p6@RUNX2!0.20!1.68!RUNX2;;chr3:150126038..150126052,+!p8@TSC22D2!0.20!1.68!TSC22D2;;chr3:150126904..150126958,+!p7@TSC22D2!0.20!1.68!TSC22D2;;chr4:87857474..87857489,+!p7@AFF1!0.20!1.68!AFF1;;chr22:39916558..39916579,+!p1@ATF4!0.19!406.02!ATF4;;chr17:80477571..80477637,+!p1@FOXK2!0.19!42.12!FOXK2;;chr2:231084659..231084721,-!p1@SP110!0.19!32.01!SP110;;chr19:39390587..39390646,+!p1@NFKBIB!0.19!21.90!NFKBIB;;chr12:122516646..122516668,+!p1@MLXIP!0.19!18.53!MLXIP;;chr19:58694421..58694485,+!p1@ZNF274!0.19!6.74!ZNF274;;chr19:46272462..46272562,-!p1@SIX5!0.19!5.05!SIX5;;chr7:138666053..138666146,-!p1@KIAA1549!0.19!5.05!KIAA1549;;chr9:117160738..117160782,-!p2@AKNA!0.19!5.05!AKNA;;chr19:52674696..52674758,-!p1@ZNF836!0.19!3.37!ZNF836;;chr19:58570605..58570655,+!p1@ZNF135!0.19!1.68!ZNF135;;chr1:6845489..6845494,+!p4@CAMTA1!0.19!1.68!CAMTA1;;chr2:214015111..214015179,-!p1@IKZF2!0.19!1.68!IKZF2;;chr3:141820622..141820635,-!p5@TFDP2!0.19!1.68!TFDP2;;chr3:44666503..44666516,+!p3@ZNF197!0.19!1.68!ZNF197;;chr16:29817399..29817425,+!p13@MAZ!0.19!1.68!MAZ;;chr16:73092791..73092831,-!p4@ZFHX3!0.19!1.68!ZFHX3;;chr16:8962202..8962222,-!p3@CARHSP1!0.19!1.68!CARHSP1;;chr17:40719073..40719080,+!p2@MLX!0.19!1.68!MLX;;chr18:19749517..19749531,+!p3@GATA6!0.19!1.68!GATA6;;chr19:20011775..20011800,+!p2@ZNF93!0.19!1.68!ZNF93;;chr5:142783792..142783842,-!p5@NR3C1!0.19!1.68!NR3C1;;chr5:17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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000731;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 42: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11600-120H7 | |||
|is_a=EFO:0002091;;FF:0000191 | |||
|is_obsolete= | |||
|library_id=CNhs12091 | |||
|library_id_phase_based=2:CNhs12091 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11600 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GGTAGC.11600 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11600 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GGTAGC.11600 | |||
|name=Urothelial Cells, donor2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs12091,LSID839,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10010,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.268580119844088,0,0.206952347189411,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0.428898149930474,0,-0.153323010348428,0,0,0,0,0,0.684094869696872,0,0,0.507468148020755,0,0,0,0,0,0,0,0,0,0,0,0,-0.0189254480850236,0,0,0,0.428898149930474,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0523857447946701,0,0,0,0.0106036267611256,0.00325167226936818,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0.640424737799617,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.231674370149908,0.262233990015283,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |||
|rna_catalog_number=SC4325 | |||
|rna_concentration=1.34 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0 | |||
|rna_lot_number=lot:4521 | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=H7 | |||
|rna_rin=10 | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=120H7 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10010.GGTAGC | |||
|sample_age= | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=urothelial cell | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Sciencell/3H | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.82144028587972e-247!GO:0005737;cytoplasm;1.20038842012513e-190!GO:0044444;cytoplasmic part;5.77777470852933e-133!GO:0043226;organelle;1.71056108456661e-120!GO:0043229;intracellular organelle;3.36787776686532e-120!GO:0043231;intracellular membrane-bound organelle;7.22834876385384e-110!GO:0043227;membrane-bound organelle;1.57219010419999e-109!GO:0044422;organelle part;5.209367336725e-104!GO:0044446;intracellular organelle part;4.90467661604506e-103!GO:0005739;mitochondrion;1.54652486441006e-67!GO:0032991;macromolecular complex;6.47853195963049e-65!GO:0030529;ribonucleoprotein complex;1.99681037516399e-63!GO:0005515;protein binding;2.20622201829815e-63!GO:0044237;cellular metabolic process;1.48034438870019e-51!GO:0044238;primary metabolic process;3.54676869412969e-51!GO:0031090;organelle membrane;6.24988863432785e-51!GO:0005840;ribosome;5.07999605084201e-50!GO:0019538;protein metabolic process;2.49078773105972e-47!GO:0006412;translation;9.10454992115742e-47!GO:0009058;biosynthetic process;1.55634156145939e-46!GO:0003735;structural constituent of ribosome;7.20659083871696e-46!GO:0044429;mitochondrial part;2.86277567759169e-45!GO:0043233;organelle lumen;1.53870936474731e-44!GO:0031974;membrane-enclosed lumen;1.53870936474731e-44!GO:0044249;cellular biosynthetic process;2.29739262819083e-43!GO:0003723;RNA binding;4.22979904691435e-41!GO:0044260;cellular macromolecule metabolic process;1.0717447071434e-40!GO:0044267;cellular protein metabolic process;1.98497542817266e-40!GO:0043170;macromolecule metabolic process;1.77884560234862e-39!GO:0033279;ribosomal subunit;7.27852716194309e-39!GO:0005829;cytosol;1.14140270587452e-38!GO:0009059;macromolecule biosynthetic process;1.45372782457339e-38!GO:0031967;organelle envelope;1.64681198191338e-34!GO:0031975;envelope;3.35074152973969e-34!GO:0015031;protein transport;1.35415637592926e-33!GO:0033036;macromolecule localization;2.74976907558292e-32!GO:0043234;protein complex;5.98901077110636e-32!GO:0044428;nuclear part;8.21687516462326e-32!GO:0045184;establishment of protein localization;1.0261690104232e-31!GO:0008104;protein localization;1.13368705627061e-31!GO:0016043;cellular component organization and biogenesis;1.27678564400309e-31!GO:0005740;mitochondrial envelope;1.95811909804464e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.19308958370795e-29!GO:0031966;mitochondrial membrane;4.70993599501449e-29!GO:0019866;organelle inner membrane;7.53793587003456e-27!GO:0006396;RNA processing;3.02824160948017e-26!GO:0005743;mitochondrial inner membrane;7.48792002887074e-26!GO:0046907;intracellular transport;1.05934894256202e-25!GO:0065003;macromolecular complex assembly;1.57262567447716e-25!GO:0043228;non-membrane-bound organelle;1.03435306080474e-24!GO:0043232;intracellular non-membrane-bound organelle;1.03435306080474e-24!GO:0044445;cytosolic part;1.53966761645737e-24!GO:0006886;intracellular protein transport;1.83334330178259e-23!GO:0005783;endoplasmic reticulum;5.74373349082206e-23!GO:0022607;cellular component assembly;1.00375558550022e-22!GO:0031981;nuclear lumen;3.51117149532803e-21!GO:0006119;oxidative phosphorylation;1.21389807988123e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.3484483717591e-20!GO:0005634;nucleus;3.99831311849174e-20!GO:0012505;endomembrane system;5.89035107436468e-20!GO:0015935;small ribosomal subunit;5.96291000395689e-20!GO:0015934;large ribosomal subunit;6.12370639326336e-20!GO:0044455;mitochondrial membrane part;1.20718471386423e-19!GO:0044432;endoplasmic reticulum part;1.4821252725837e-19!GO:0016071;mRNA metabolic process;2.71005599256974e-19!GO:0006996;organelle organization and biogenesis;3.7765715039806e-19!GO:0008380;RNA splicing;3.79379038518294e-18!GO:0048770;pigment granule;1.32622620451606e-17!GO:0042470;melanosome;1.32622620451606e-17!GO:0006397;mRNA processing;3.4938263560225e-17!GO:0031980;mitochondrial lumen;5.5523085653427e-17!GO:0005759;mitochondrial matrix;5.5523085653427e-17!GO:0012501;programmed cell death;3.20881483550335e-16!GO:0051649;establishment of cellular localization;4.55074313609906e-16!GO:0006915;apoptosis;6.64641759707275e-16!GO:0051186;cofactor metabolic process;8.19375584827412e-16!GO:0051641;cellular localization;1.04234349049457e-15!GO:0005794;Golgi apparatus;1.18461368092405e-15!GO:0005746;mitochondrial respiratory chain;2.21502902370121e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.93174947605326e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.84791090591223e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.46131865543722e-15!GO:0005789;endoplasmic reticulum membrane;6.76563928228712e-15!GO:0008219;cell death;8.27815316207366e-15!GO:0016265;death;8.27815316207366e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.71157471036399e-15!GO:0050136;NADH dehydrogenase (quinone) activity;2.10878563001308e-14!GO:0003954;NADH dehydrogenase activity;2.10878563001308e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.10878563001308e-14!GO:0006457;protein folding;2.87039946130603e-13!GO:0008134;transcription factor binding;3.52910997474745e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.22720851508256e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;5.26240462755868e-13!GO:0016462;pyrophosphatase activity;5.54057041705994e-13!GO:0044248;cellular catabolic process;6.26408118210198e-13!GO:0005761;mitochondrial ribosome;8.74898997752093e-13!GO:0000313;organellar ribosome;8.74898997752093e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.74898997752093e-13!GO:0042773;ATP synthesis coupled electron transport;8.74898997752093e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.09048014317543e-12!GO:0017111;nucleoside-triphosphatase activity;1.21248825587334e-12!GO:0005681;spliceosome;1.32379208630586e-12!GO:0006732;coenzyme metabolic process;1.48526862356757e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.7545459327517e-12!GO:0045271;respiratory chain complex I;1.7545459327517e-12!GO:0005747;mitochondrial respiratory chain complex I;1.7545459327517e-12!GO:0006605;protein targeting;2.36876784148954e-12!GO:0043283;biopolymer metabolic process;2.45461054872763e-12!GO:0016874;ligase activity;2.68076138151892e-12!GO:0022618;protein-RNA complex assembly;4.04731735219135e-12!GO:0005730;nucleolus;5.34053431388415e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.5308253890637e-12!GO:0000502;proteasome complex (sensu Eukaryota);6.47438535066819e-12!GO:0010467;gene expression;7.04204307903282e-12!GO:0009057;macromolecule catabolic process;8.08464816926335e-12!GO:0009055;electron carrier activity;1.13024591707428e-11!GO:0044265;cellular macromolecule catabolic process;1.62553993614789e-11!GO:0016491;oxidoreductase activity;1.69010088857369e-11!GO:0005654;nucleoplasm;1.86692148957072e-11!GO:0043067;regulation of programmed cell death;2.80331982578211e-11!GO:0042981;regulation of apoptosis;4.17808995283958e-11!GO:0043285;biopolymer catabolic process;4.52615464384984e-11!GO:0043412;biopolymer modification;6.90218366323025e-11!GO:0000166;nucleotide binding;9.28370231369909e-11!GO:0051082;unfolded protein binding;1.90564823235641e-10!GO:0006461;protein complex assembly;2.01335881059575e-10!GO:0016192;vesicle-mediated transport;2.95000553240009e-10!GO:0006464;protein modification process;3.57897424437304e-10!GO:0048193;Golgi vesicle transport;5.38561042041165e-10!GO:0008135;translation factor activity, nucleic acid binding;5.74998265491138e-10!GO:0030163;protein catabolic process;7.43334277046052e-10!GO:0006512;ubiquitin cycle;7.81100202265541e-10!GO:0044451;nucleoplasm part;1.03569262787686e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.37769098861916e-09!GO:0044257;cellular protein catabolic process;2.18425964370459e-09!GO:0019941;modification-dependent protein catabolic process;2.20715285591324e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.20715285591324e-09!GO:0051188;cofactor biosynthetic process;3.07532302103158e-09!GO:0009056;catabolic process;3.31380150857026e-09!GO:0006511;ubiquitin-dependent protein catabolic process;4.49862328403572e-09!GO:0006259;DNA metabolic process;4.53519728970689e-09!GO:0003712;transcription cofactor activity;5.40846812396002e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.51194640296133e-08!GO:0007005;mitochondrion organization and biogenesis;1.86702026429837e-08!GO:0042254;ribosome biogenesis and assembly;2.14042124210051e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.28943413106835e-08!GO:0043687;post-translational protein modification;2.46110986533789e-08!GO:0005768;endosome;2.8528650280832e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.14140091760703e-08!GO:0048475;coated membrane;3.8321307285139e-08!GO:0030117;membrane coat;3.8321307285139e-08!GO:0008565;protein transporter activity;3.8321307285139e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.97535099616893e-08!GO:0048522;positive regulation of cellular process;4.56684754910006e-08!GO:0005773;vacuole;4.56952276876091e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.73733382153969e-08!GO:0000375;RNA splicing, via transesterification reactions;4.73733382153969e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.73733382153969e-08!GO:0048523;negative regulation of cellular process;4.73871366275873e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.73871366275873e-08!GO:0006413;translational initiation;6.89802222345423e-08!GO:0006446;regulation of translational initiation;9.21991388214413e-08!GO:0003743;translation initiation factor activity;1.00288858667456e-07!GO:0006091;generation of precursor metabolites and energy;1.06275946225653e-07!GO:0006163;purine nucleotide metabolic process;1.06275946225653e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.12749387747374e-07!GO:0009259;ribonucleotide metabolic process;1.12749387747374e-07!GO:0017076;purine nucleotide binding;1.1484801740653e-07!GO:0005793;ER-Golgi intermediate compartment;1.41511709897737e-07!GO:0030120;vesicle coat;1.51709395198788e-07!GO:0030662;coated vesicle membrane;1.51709395198788e-07!GO:0009150;purine ribonucleotide metabolic process;1.53083458133842e-07!GO:0051246;regulation of protein metabolic process;1.88700869298997e-07!GO:0007049;cell cycle;2.06795148567961e-07!GO:0044431;Golgi apparatus part;2.15024898986568e-07!GO:0032553;ribonucleotide binding;2.19506269017964e-07!GO:0032555;purine ribonucleotide binding;2.19506269017964e-07!GO:0006164;purine nucleotide biosynthetic process;2.65154906907154e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.65513496739776e-07!GO:0015986;ATP synthesis coupled proton transport;2.66622257020913e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.66622257020913e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.75411683109007e-07!GO:0043069;negative regulation of programmed cell death;3.77356706767651e-07!GO:0008639;small protein conjugating enzyme activity;4.04756120208004e-07!GO:0003924;GTPase activity;4.16970209125076e-07!GO:0009108;coenzyme biosynthetic process;4.57973553850891e-07!GO:0048519;negative regulation of biological process;4.6330395585561e-07!GO:0000074;regulation of progression through cell cycle;4.97795384872688e-07!GO:0009260;ribonucleotide biosynthetic process;5.03733364244256e-07!GO:0009141;nucleoside triphosphate metabolic process;5.23571512077414e-07!GO:0051726;regulation of cell cycle;5.37528033261985e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.43025574348888e-07!GO:0000323;lytic vacuole;5.59991003963517e-07!GO:0005764;lysosome;5.59991003963517e-07!GO:0004842;ubiquitin-protein ligase activity;7.54295667768268e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.75924580100167e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.97442658320572e-07!GO:0043066;negative regulation of apoptosis;9.43702243930979e-07!GO:0019787;small conjugating protein ligase activity;1.10919168224626e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.12283149668646e-06!GO:0019829;cation-transporting ATPase activity;1.13326480388982e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.29379947088636e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.29379947088636e-06!GO:0006913;nucleocytoplasmic transport;1.34886508577138e-06!GO:0006754;ATP biosynthetic process;1.38833225725565e-06!GO:0006753;nucleoside phosphate metabolic process;1.38833225725565e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.43426827474227e-06!GO:0046034;ATP metabolic process;1.77675006136016e-06!GO:0017038;protein import;1.80873738509396e-06!GO:0045259;proton-transporting ATP synthase complex;1.81114199309514e-06!GO:0048518;positive regulation of biological process;1.89353702624036e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.94817988705579e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.94817988705579e-06!GO:0005770;late endosome;1.95958148639347e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.30609737465954e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.30609737465954e-06!GO:0009117;nucleotide metabolic process;2.4503164072031e-06!GO:0051169;nuclear transport;2.67892855756138e-06!GO:0031988;membrane-bound vesicle;2.84615516942785e-06!GO:0006916;anti-apoptosis;3.30651873379486e-06!GO:0016787;hydrolase activity;4.70082515893577e-06!GO:0009967;positive regulation of signal transduction;6.94220140858385e-06!GO:0000139;Golgi membrane;7.06082250182294e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.39345989996321e-06!GO:0006752;group transfer coenzyme metabolic process;8.13218607885284e-06!GO:0016740;transferase activity;9.4291037109473e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.62355324265124e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.2561022265868e-05!GO:0022402;cell cycle process;1.26712036570679e-05!GO:0016881;acid-amino acid ligase activity;1.39066609684649e-05!GO:0006399;tRNA metabolic process;1.51062979540507e-05!GO:0005635;nuclear envelope;1.56241687662441e-05!GO:0005788;endoplasmic reticulum lumen;1.58429360752474e-05!GO:0048468;cell development;1.64494441437537e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.67067210836898e-05!GO:0009060;aerobic respiration;1.67505124445286e-05!GO:0030554;adenyl nucleotide binding;1.70032924120629e-05!GO:0005524;ATP binding;1.72360187463968e-05!GO:0042802;identical protein binding;1.8075148783329e-05!GO:0007243;protein kinase cascade;1.86802247209162e-05!GO:0006364;rRNA processing;2.31723884821529e-05!GO:0005762;mitochondrial large ribosomal subunit;2.31723884821529e-05!GO:0000315;organellar large ribosomal subunit;2.31723884821529e-05!GO:0065009;regulation of a molecular function;2.48005376074901e-05!GO:0016604;nuclear body;2.56137835327688e-05!GO:0032559;adenyl ribonucleotide binding;2.58207556366448e-05!GO:0016072;rRNA metabolic process;2.76318728393976e-05!GO:0031252;leading edge;2.85805999869159e-05!GO:0044440;endosomal part;3.02827579598899e-05!GO:0010008;endosome membrane;3.02827579598899e-05!GO:0016887;ATPase activity;3.28200104889928e-05!GO:0030118;clathrin coat;3.37153018540408e-05!GO:0000785;chromatin;3.39362507193515e-05!GO:0006323;DNA packaging;3.49828220389235e-05!GO:0004298;threonine endopeptidase activity;4.22594160820641e-05!GO:0019843;rRNA binding;4.60403787053936e-05!GO:0042623;ATPase activity, coupled;5.12726204135408e-05!GO:0006366;transcription from RNA polymerase II promoter;5.21440922578862e-05!GO:0031410;cytoplasmic vesicle;5.23468303872824e-05!GO:0031982;vesicle;5.23797559459454e-05!GO:0006979;response to oxidative stress;5.50027134736052e-05!GO:0008610;lipid biosynthetic process;6.06698869875462e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.17596732977065e-05!GO:0008632;apoptotic program;7.00703083471123e-05!GO:0016563;transcription activator activity;7.24231924895946e-05!GO:0006793;phosphorus metabolic process;7.39971244028365e-05!GO:0006796;phosphate metabolic process;7.39971244028365e-05!GO:0045786;negative regulation of progression through cell cycle;7.58618654106996e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.77390194545488e-05!GO:0004812;aminoacyl-tRNA ligase activity;7.77390194545488e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.77390194545488e-05!GO:0045333;cellular respiration;8.21952609872413e-05!GO:0045454;cell redox homeostasis;8.76160560394452e-05!GO:0051187;cofactor catabolic process;0.000112407846382317!GO:0000278;mitotic cell cycle;0.000116605216289104!GO:0016044;membrane organization and biogenesis;0.000143041208402531!GO:0006333;chromatin assembly or disassembly;0.000143041208402531!GO:0005525;GTP binding;0.000146064945958493!GO:0003713;transcription coactivator activity;0.000149306894193187!GO:0006082;organic acid metabolic process;0.000164902848723552!GO:0005798;Golgi-associated vesicle;0.000164902848723552!GO:0031965;nuclear membrane;0.000164902848723552!GO:0043038;amino acid activation;0.000168832104808497!GO:0006418;tRNA aminoacylation for protein translation;0.000168832104808497!GO:0043039;tRNA aminoacylation;0.000168832104808497!GO:0030119;AP-type membrane coat adaptor complex;0.000169639502111947!GO:0032446;protein modification by small protein conjugation;0.000169639502111947!GO:0006099;tricarboxylic acid cycle;0.000178312041143508!GO:0046356;acetyl-CoA catabolic process;0.000178312041143508!GO:0019752;carboxylic acid metabolic process;0.000190894327127018!GO:0031968;organelle outer membrane;0.000192758429970457!GO:0019867;outer membrane;0.00019545899771653!GO:0043065;positive regulation of apoptosis;0.000202155642242597!GO:0006118;electron transport;0.000205876937248064!GO:0003714;transcription corepressor activity;0.000214131243040596!GO:0043068;positive regulation of programmed cell death;0.000215853462107098!GO:0065002;intracellular protein transport across a membrane;0.000220974923976408!GO:0005905;coated pit;0.000230396010685311!GO:0044453;nuclear membrane part;0.000266520205282156!GO:0009109;coenzyme catabolic process;0.00027267693487985!GO:0016567;protein ubiquitination;0.000286860847755773!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000286860847755773!GO:0015399;primary active transmembrane transporter activity;0.000286860847755773!GO:0044255;cellular lipid metabolic process;0.000291671003256841!GO:0043623;cellular protein complex assembly;0.000292989433575679!GO:0030131;clathrin adaptor complex;0.000305072141412975!GO:0006414;translational elongation;0.000310708773735069!GO:0008654;phospholipid biosynthetic process;0.000323834947761357!GO:0006084;acetyl-CoA metabolic process;0.000332622446401895!GO:0019899;enzyme binding;0.000350779295928692!GO:0016310;phosphorylation;0.000360191304756543!GO:0065004;protein-DNA complex assembly;0.000364430707739284!GO:0030036;actin cytoskeleton organization and biogenesis;0.000381813597490751!GO:0016564;transcription repressor activity;0.000386873541682437!GO:0051170;nuclear import;0.000388069890757841!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000403599372852095!GO:0016779;nucleotidyltransferase activity;0.000407387058355521!GO:0005741;mitochondrial outer membrane;0.000471709426114229!GO:0006606;protein import into nucleus;0.000477803204691779!GO:0006334;nucleosome assembly;0.000499454864192122!GO:0016126;sterol biosynthetic process;0.000530937154304259!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000546751898258512!GO:0030132;clathrin coat of coated pit;0.000577925888513241!GO:0006818;hydrogen transport;0.000623922628188273!GO:0001726;ruffle;0.000656023746532279!GO:0000314;organellar small ribosomal subunit;0.000663573313865665!GO:0005763;mitochondrial small ribosomal subunit;0.000663573313865665!GO:0015992;proton transport;0.000670089207286383!GO:0051427;hormone receptor binding;0.000677407713319443!GO:0031497;chromatin assembly;0.000746019553552396!GO:0033116;ER-Golgi intermediate compartment membrane;0.000851803453574979!GO:0008637;apoptotic mitochondrial changes;0.000896192096147271!GO:0008250;oligosaccharyl transferase complex;0.000898509591131564!GO:0000245;spliceosome assembly;0.000926941577136496!GO:0030133;transport vesicle;0.000942562320914863!GO:0030867;rough endoplasmic reticulum membrane;0.000956416565660977!GO:0016607;nuclear speck;0.00103356377547392!GO:0007006;mitochondrial membrane organization and biogenesis;0.00103972129250035!GO:0030658;transport vesicle membrane;0.00107208965025823!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00109077743367846!GO:0022890;inorganic cation transmembrane transporter activity;0.00109944773412045!GO:0006066;alcohol metabolic process;0.00110046372457518!GO:0044262;cellular carbohydrate metabolic process;0.00111719316883324!GO:0043681;protein import into mitochondrion;0.00116658560432001!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00118018969621096!GO:0035257;nuclear hormone receptor binding;0.00118966258554445!GO:0016853;isomerase activity;0.00119500666529785!GO:0030125;clathrin vesicle coat;0.00125019286672937!GO:0030665;clathrin coated vesicle membrane;0.00125019286672937!GO:0003899;DNA-directed RNA polymerase activity;0.00125019286672937!GO:0016125;sterol metabolic process;0.0012919779857589!GO:0032561;guanyl ribonucleotide binding;0.00144819655893152!GO:0019001;guanyl nucleotide binding;0.00144819655893152!GO:0001836;release of cytochrome c from mitochondria;0.0015333763911271!GO:0008092;cytoskeletal protein binding;0.00154922995914345!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00154980151057543!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00154980151057543!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00154980151057543!GO:0051276;chromosome organization and biogenesis;0.00159001414135821!GO:0043021;ribonucleoprotein binding;0.00159148151929118!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00179244353155173!GO:0006839;mitochondrial transport;0.00180163564572538!GO:0005885;Arp2/3 protein complex;0.0018170909665654!GO:0006629;lipid metabolic process;0.00192644286680284!GO:0006917;induction of apoptosis;0.00193662185299271!GO:0051920;peroxiredoxin activity;0.00197769362858696!GO:0006626;protein targeting to mitochondrion;0.00199056323889276!GO:0050790;regulation of catalytic activity;0.00204719510536157!GO:0043492;ATPase activity, coupled to movement of substances;0.00206655543668544!GO:0030029;actin filament-based process;0.00214264259288736!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00215518798753344!GO:0030031;cell projection biogenesis;0.00215614986384702!GO:0005774;vacuolar membrane;0.00218760577908306!GO:0005048;signal sequence binding;0.00222856825881043!GO:0055092;sterol homeostasis;0.00224235476810445!GO:0042632;cholesterol homeostasis;0.00224235476810445!GO:0030176;integral to endoplasmic reticulum membrane;0.0022798593591718!GO:0031324;negative regulation of cellular metabolic process;0.00242326096082309!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00250042545822527!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0025256480984774!GO:0012502;induction of programmed cell death;0.00255188874441392!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00255188874441392!GO:0031902;late endosome membrane;0.00256610521444976!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0027038828585414!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0027038828585414!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0027038828585414!GO:0043284;biopolymer biosynthetic process;0.00275075508035726!GO:0030660;Golgi-associated vesicle membrane;0.00277712052902315!GO:0043488;regulation of mRNA stability;0.00277712052902315!GO:0043487;regulation of RNA stability;0.00277712052902315!GO:0016049;cell growth;0.00281653453359669!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00281653453359669!GO:0051329;interphase of mitotic cell cycle;0.00294541520951015!GO:0051789;response to protein stimulus;0.0029612368648396!GO:0006986;response to unfolded protein;0.0029612368648396!GO:0005791;rough endoplasmic reticulum;0.00302522688066131!GO:0045941;positive regulation of transcription;0.00302522688066131!GO:0008361;regulation of cell size;0.00302522688066131!GO:0045893;positive regulation of transcription, DNA-dependent;0.0031444102319892!GO:0007264;small GTPase mediated signal transduction;0.00331473563316519!GO:0008243;plasminogen activator activity;0.00339133543651768!GO:0008283;cell proliferation;0.00339133543651768!GO:0018196;peptidyl-asparagine modification;0.00341976519827427!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00341976519827427!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00345521320955613!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00347193676890616!GO:0045926;negative regulation of growth;0.00352361036065016!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00358694355268811!GO:0015002;heme-copper terminal oxidase activity;0.00358694355268811!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00358694355268811!GO:0004129;cytochrome-c oxidase activity;0.00358694355268811!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00358694355268811!GO:0006613;cotranslational protein targeting to membrane;0.00360649159402722!GO:0006695;cholesterol biosynthetic process;0.00380185044040715!GO:0055088;lipid homeostasis;0.00408439708539562!GO:0004576;oligosaccharyl transferase activity;0.00412394639059538!GO:0009165;nucleotide biosynthetic process;0.00423332179852541!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00444212180192014!GO:0044437;vacuolar part;0.00462945939933561!GO:0016568;chromatin modification;0.00482653685344162!GO:0005684;U2-dependent spliceosome;0.00495072652566278!GO:0005769;early endosome;0.00498549804708235!GO:0001558;regulation of cell growth;0.00519280411646216!GO:0005643;nuclear pore;0.00533593394112678!GO:0048471;perinuclear region of cytoplasm;0.00554499113207493!GO:0006778;porphyrin metabolic process;0.00558685295624823!GO:0033013;tetrapyrrole metabolic process;0.00558685295624823!GO:0030659;cytoplasmic vesicle membrane;0.00570166290010284!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0057135820573816!GO:0006974;response to DNA damage stimulus;0.00586576839257676!GO:0030145;manganese ion binding;0.00600370135610095!GO:0045792;negative regulation of cell size;0.00648113976843972!GO:0030308;negative regulation of cell growth;0.00650017963819705!GO:0046474;glycerophospholipid biosynthetic process;0.00662255982838728!GO:0000786;nucleosome;0.00671145793854866!GO:0030880;RNA polymerase complex;0.0067438536288345!GO:0007242;intracellular signaling cascade;0.00720504319509237!GO:0015980;energy derivation by oxidation of organic compounds;0.00745163968250884!GO:0051252;regulation of RNA metabolic process;0.00761050320460933!GO:0048487;beta-tubulin binding;0.00764255728991511!GO:0008026;ATP-dependent helicase activity;0.00806876779728552!GO:0051325;interphase;0.00825467587546955!GO:0017166;vinculin binding;0.00844693284148264!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00851869489188203!GO:0006740;NADPH regeneration;0.00861688270890273!GO:0006098;pentose-phosphate shunt;0.00861688270890273!GO:0016272;prefoldin complex;0.00877576444856883!GO:0005765;lysosomal membrane;0.00884439016936443!GO:0042168;heme metabolic process;0.00905153678505298!GO:0051101;regulation of DNA binding;0.00915924478209948!GO:0006458;'de novo' protein folding;0.00915924478209948!GO:0051084;'de novo' posttranslational protein folding;0.00915924478209948!GO:0005667;transcription factor complex;0.00930838086238556!GO:0046930;pore complex;0.00935443403060578!GO:0009892;negative regulation of metabolic process;0.00951757424230172!GO:0048037;cofactor binding;0.00955135131890272!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00960003965646283!GO:0006595;polyamine metabolic process;0.0096341352511401!GO:0050662;coenzyme binding;0.00999480438319013!GO:0046483;heterocycle metabolic process;0.0100341010648415!GO:0046822;regulation of nucleocytoplasmic transport;0.0100893025771901!GO:0006509;membrane protein ectodomain proteolysis;0.0104279156953831!GO:0033619;membrane protein proteolysis;0.0104279156953831!GO:0007040;lysosome organization and biogenesis;0.0104279156953831!GO:0006417;regulation of translation;0.0104411746044407!GO:0016859;cis-trans isomerase activity;0.0111304913473495!GO:0005149;interleukin-1 receptor binding;0.011288833445117!GO:0009719;response to endogenous stimulus;0.0116392486445756!GO:0048144;fibroblast proliferation;0.0117263098112158!GO:0048145;regulation of fibroblast proliferation;0.0117263098112158!GO:0006612;protein targeting to membrane;0.0121531722091251!GO:0004386;helicase activity;0.012764223745533!GO:0006260;DNA replication;0.0129392667633822!GO:0051098;regulation of binding;0.0133723433835987!GO:0008203;cholesterol metabolic process;0.0134401599617772!GO:0006779;porphyrin biosynthetic process;0.0137008341570138!GO:0033014;tetrapyrrole biosynthetic process;0.0137008341570138!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0143026204139819!GO:0000428;DNA-directed RNA polymerase complex;0.0143026204139819!GO:0008629;induction of apoptosis by intracellular signals;0.0146665928520409!GO:0040008;regulation of growth;0.0148257783262785!GO:0031529;ruffle organization and biogenesis;0.0150940651637559!GO:0030663;COPI coated vesicle membrane;0.0153684053218446!GO:0030126;COPI vesicle coat;0.0153684053218446!GO:0016197;endosome transport;0.0156668503892508!GO:0006007;glucose catabolic process;0.015980437944451!GO:0007033;vacuole organization and biogenesis;0.0161432606468986!GO:0007010;cytoskeleton organization and biogenesis;0.0162792190269045!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0163427576799945!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0170586469269732!GO:0030137;COPI-coated vesicle;0.0170868557204849!GO:0035035;histone acetyltransferase binding;0.0172153815814245!GO:0044427;chromosomal part;0.0172153815814245!GO:0006950;response to stress;0.0175162171834495!GO:0044433;cytoplasmic vesicle part;0.0181391093980107!GO:0001666;response to hypoxia;0.0184470074512658!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0187786114143399!GO:0051085;chaperone cofactor-dependent protein folding;0.0191990629760225!GO:0003724;RNA helicase activity;0.0192511463783951!GO:0007050;cell cycle arrest;0.0193210700935093!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0193613745876764!GO:0000082;G1/S transition of mitotic cell cycle;0.0200970749473753!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0200970749473753!GO:0000151;ubiquitin ligase complex;0.0200970749473753!GO:0006749;glutathione metabolic process;0.0200970749473753!GO:0031272;regulation of pseudopodium formation;0.0200970749473753!GO:0031269;pseudopodium formation;0.0200970749473753!GO:0031344;regulation of cell projection organization and biogenesis;0.0200970749473753!GO:0031268;pseudopodium organization and biogenesis;0.0200970749473753!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0200970749473753!GO:0031274;positive regulation of pseudopodium formation;0.0200970749473753!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0203546648527744!GO:0050178;phenylpyruvate tautomerase activity;0.0208156626149706!GO:0006783;heme biosynthetic process;0.0213548475093353!GO:0046489;phosphoinositide biosynthetic process;0.0213548475093353!GO:0006650;glycerophospholipid metabolic process;0.0218704706739946!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0218704706739946!GO:0030433;ER-associated protein catabolic process;0.0223139356760486!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0223139356760486!GO:0016485;protein processing;0.0225640808266012!GO:0048146;positive regulation of fibroblast proliferation;0.0230714112513719!GO:0006891;intra-Golgi vesicle-mediated transport;0.0247359514223952!GO:0003697;single-stranded DNA binding;0.0247865614432505!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0251563891413561!GO:0046467;membrane lipid biosynthetic process;0.0251691558226489!GO:0008139;nuclear localization sequence binding;0.0259271564269514!GO:0031326;regulation of cellular biosynthetic process;0.0287162420642916!GO:0019318;hexose metabolic process;0.0287796805407183!GO:0009166;nucleotide catabolic process;0.028986013539824!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0294906513903951!GO:0010257;NADH dehydrogenase complex assembly;0.0294906513903951!GO:0033108;mitochondrial respiratory chain complex assembly;0.0294906513903951!GO:0032507;maintenance of cellular protein localization;0.0295818405927651!GO:0051716;cellular response to stimulus;0.0297957584972846!GO:0008033;tRNA processing;0.0297957584972846!GO:0031072;heat shock protein binding;0.0299378468027303!GO:0043281;regulation of caspase activity;0.0300128456452543!GO:0003746;translation elongation factor activity;0.0300191500138215!GO:0006739;NADP metabolic process;0.030430418950352!GO:0051287;NAD binding;0.0310065568458091!GO:0006520;amino acid metabolic process;0.0312946647776879!GO:0035258;steroid hormone receptor binding;0.0314600745149221!GO:0045936;negative regulation of phosphate metabolic process;0.0315670889140736!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0317928243676947!GO:0043154;negative regulation of caspase activity;0.0319538845389036!GO:0051881;regulation of mitochondrial membrane potential;0.0319538845389036!GO:0005856;cytoskeleton;0.031980265867701!GO:0009889;regulation of biosynthetic process;0.031980265867701!GO:0005996;monosaccharide metabolic process;0.0323750457566952!GO:0030833;regulation of actin filament polymerization;0.0325018530374603!GO:0003756;protein disulfide isomerase activity;0.0325018530374603!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0325018530374603!GO:0008213;protein amino acid alkylation;0.0325018530374603!GO:0006479;protein amino acid methylation;0.0325018530374603!GO:0030134;ER to Golgi transport vesicle;0.0327118226667211!GO:0007265;Ras protein signal transduction;0.0327243878369637!GO:0006790;sulfur metabolic process;0.0330345209092905!GO:0000049;tRNA binding;0.0346553702349304!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0351040200764664!GO:0006733;oxidoreduction coenzyme metabolic process;0.0351040200764664!GO:0030027;lamellipodium;0.0353493013584999!GO:0004680;casein kinase activity;0.0354287661530812!GO:0006897;endocytosis;0.0362873498519871!GO:0010324;membrane invagination;0.0362873498519871!GO:0008538;proteasome activator activity;0.0363471562375998!GO:0051235;maintenance of localization;0.037346668118501!GO:0005869;dynactin complex;0.037346668118501!GO:0046983;protein dimerization activity;0.037346668118501!GO:0045334;clathrin-coated endocytic vesicle;0.0377062841455587!GO:0015631;tubulin binding;0.0377062841455587!GO:0008186;RNA-dependent ATPase activity;0.0377062841455587!GO:0006633;fatty acid biosynthetic process;0.0382852446900021!GO:0009966;regulation of signal transduction;0.0384654870649204!GO:0033673;negative regulation of kinase activity;0.0384654870649204!GO:0006469;negative regulation of protein kinase activity;0.0384654870649204!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0384654870649204!GO:0005694;chromosome;0.0398176802689318!GO:0030127;COPII vesicle coat;0.0399621434706038!GO:0012507;ER to Golgi transport vesicle membrane;0.0399621434706038!GO:0033559;unsaturated fatty acid metabolic process;0.0399621434706038!GO:0006636;unsaturated fatty acid biosynthetic process;0.0399621434706038!GO:0016481;negative regulation of transcription;0.0399621434706038!GO:0006281;DNA repair;0.0399621434706038!GO:0042987;amyloid precursor protein catabolic process;0.0403935219386639!GO:0030041;actin filament polymerization;0.0407531162765679!GO:0046519;sphingoid metabolic process;0.0411628477126585!GO:0043566;structure-specific DNA binding;0.0412237931222164!GO:0005758;mitochondrial intermembrane space;0.0427840753931602!GO:0030128;clathrin coat of endocytic vesicle;0.0428257142686188!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0428257142686188!GO:0030122;AP-2 adaptor complex;0.0428257142686188!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.04285747136425!GO:0012510;trans-Golgi network transport vesicle membrane;0.04285747136425!GO:0007067;mitosis;0.0432156433815551!GO:0043022;ribosome binding;0.0438358845548816!GO:0046979;TAP2 binding;0.0440300169706094!GO:0046977;TAP binding;0.0440300169706094!GO:0046978;TAP1 binding;0.0440300169706094!GO:0046394;carboxylic acid biosynthetic process;0.0455158706755867!GO:0016053;organic acid biosynthetic process;0.0455158706755867!GO:0008426;protein kinase C inhibitor activity;0.0465765075873268!GO:0051651;maintenance of cellular localization;0.0467180623706693!GO:0006354;RNA elongation;0.0470409389217608!GO:0051272;positive regulation of cell motility;0.0471452192800283!GO:0040017;positive regulation of locomotion;0.0471452192800283!GO:0051540;metal cluster binding;0.0481596901796233!GO:0051536;iron-sulfur cluster binding;0.0481596901796233!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0483339089114499!GO:0005912;adherens junction;0.0483664858516935!GO:0016791;phosphoric monoester hydrolase activity;0.0485287905512869!GO:0008652;amino acid biosynthetic process;0.0485287905512869!GO:0043414;biopolymer methylation;0.0485287905512869!GO:0022415;viral reproductive process;0.0491133483489021!GO:0006643;membrane lipid metabolic process;0.049502017624553!GO:0030100;regulation of endocytosis;0.0497399114451773!GO:0000087;M phase of mitotic cell cycle;0.0497399114451773!GO:0006518;peptide metabolic process;0.0497399114451773 | |||
|sample_id=11600 | |||
|sample_note= | |||
|sample_sex= | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=bladder | |||
|top_motifs=TP53:3.04150904272;TBX4,5:2.38839526935;HAND1,2:2.26805989012;ZEB1:2.23267741725;ZNF423:1.83655493634;PPARG:1.76735931193;SNAI1..3:1.68830893887;NR5A1,2:1.66567545253;TFCP2:1.46829693971;ZNF148:1.3368261664;MYOD1:1.32306261378;VSX1,2:1.3035857394;TBP:1.20191483317;PAX1,9:1.08261754913;LMO2:1.0676382441;ZNF238:1.014948963;EBF1:0.977466535916;STAT5{A,B}:0.882224398058;ADNP_IRX_SIX_ZHX:0.858396981283;GLI1..3:0.833609236174;GZF1:0.812720355464;HMX1:0.778807724179;ONECUT1,2:0.757609818635;NKX2-3_NKX2-5:0.753581195846;TEAD1:0.748035591111;FOXM1:0.740079889236;TEF:0.723740028133;NANOG:0.721187907173;SPZ1:0.693134947524;RXRA_VDR{dimer}:0.625509914759;FOS_FOS{B,L1}_JUN{B,D}:0.607851794336;LHX3,4:0.596201070383;POU2F1..3:0.596118700101;MTF1:0.591858562085;TLX1..3_NFIC{dimer}:0.576284191888;XCPE1{core}:0.567955364041;ZBTB6:0.531911849418;RREB1:0.505683227649;LEF1_TCF7_TCF7L1,2:0.455514158796;bHLH_family:0.418787521078;FOXL1:0.411517607817;NR3C1:0.366074984518;REST:0.355424609874;ZIC1..3:0.353696080152;GFI1B:0.34248124464;FOSL2:0.321427107035;GTF2A1,2:0.307822981273;AR:0.294244970583;HNF4A_NR2F1,2:0.289897408417;POU1F1:0.284494424743;RXR{A,B,G}:0.281303199546;HOX{A5,B5}:0.255761507427;TFAP2{A,C}:0.255641221969;HOX{A4,D4}:0.254964158653;CEBPA,B_DDIT3:0.24490204513;HLF:0.242512088435;ESR1:0.223384844988;NR6A1:0.215343814133;POU6F1:0.21097219683;BACH2:0.207796608333;SMAD1..7,9:0.192240435123;TOPORS:0.179890249267;NFIX:0.177393951263;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.121458698778;GATA6:0.114597397139;NFKB1_REL_RELA:0.0757301583496;KLF4:0.0701250535819;NKX3-2:0.068484399123;UFEwm:0.0653360327929;HNF1A:0.0574864780971;HOX{A6,A7,B6,B7}:0.0521879356062;SP1:0.0344949598709;TFAP4:0.0175931529481;HIC1:-0.00130555646585;NFE2:-0.029472151345;STAT2,4,6:-0.0509372280105;SOX2:-0.0534829668475;ARID5B:-0.0872890098937;MED-1{core}:-0.0944900592884;IRF7:-0.122740629116;IKZF1:-0.12858662083;OCT4_SOX2{dimer}:-0.129568352999;POU5F1:-0.142387540757;SOX17:-0.169703940335;NKX2-2,8:-0.191828931337;ETS1,2:-0.21097039883;MAFB:-0.234358526636;ESRRA:-0.246084877162;MAZ:-0.257969971851;FOXA2:-0.259594108985;NFE2L1:-0.268526207162;JUN:-0.277717475146;CDC5L:-0.282232515301;PBX1:-0.29566161766;GTF2I:-0.29833102947;RBPJ:-0.310254239244;EP300:-0.318271387834;MEF2{A,B,C,D}:-0.325102861341;ALX1:-0.35678925801;SRF:-0.376069468829;NKX2-1,4:-0.377154002842;NFE2L2:-0.380948875508;PITX1..3:-0.382793564726;NHLH1,2:-0.385209688106;PAX2:-0.390640577231;PAX4:-0.394461061207;FOX{F1,F2,J1}:-0.405441329664;SPIB:-0.407085814061;DBP:-0.426968223597;NFIL3:-0.427748975938;TLX2:-0.441917814297;HOXA9_MEIS1:-0.450183008918;RUNX1..3:-0.458456768843;HES1:-0.462209756218;T:-0.465786307049;RORA:-0.476892856505;TFAP2B:-0.477334099997;HSF1,2:-0.488547435525;PAX5:-0.49564874171;HMGA1,2:-0.512793031763;SOX{8,9,10}:-0.52805274155;MYFfamily:-0.550398586775;MYBL2:-0.557081721569;MYB:-0.56414459127;CRX:-0.580917999091;FOXQ1:-0.589503230006;TAL1_TCF{3,4,12}:-0.591990848778;SPI1:-0.596945189361;HIF1A:-0.601990548529;PAX6:-0.60505384681;AIRE:-0.611542509326;ATF2:-0.621562028213;CUX2:-0.657744450379;RFX1:-0.680448481315;PAX8:-0.681090197084;ALX4:-0.683540522593;NR1H4:-0.690948600511;GCM1,2:-0.695303748367;MTE{core}:-0.699301493318;HBP1_HMGB_SSRP1_UBTF:-0.716758448315;ZNF384:-0.737005907481;PAX3,7:-0.740705780275;PDX1:-0.745524404455;FOXN1:-0.754717981583;IRF1,2:-0.754926060325;ATF6:-0.769783937242;POU3F1..4:-0.773176729184;NFATC1..3:-0.806555942902;SOX5:-0.825890806808;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.834023830178;PRRX1,2:-0.901940464164;RFX2..5_RFXANK_RFXAP:-0.930814649809;FOX{D1,D2}:-0.939192363306;PRDM1:-0.944883309542;PATZ1:-0.947326151341;ZFP161:-0.951841795309;ATF4:-0.987222449584;NFY{A,B,C}:-0.994342779619;NKX3-1:-1.02267171295;FOXO1,3,4:-1.02415233551;ZBTB16:-1.04095618032;ATF5_CREB3:-1.05170176553;ZNF143:-1.08026133235;GFI1:-1.09637759179;EVI1:-1.10306219497;NKX6-1,2:-1.1199278054;FOXP1:-1.18222095658;IKZF2:-1.18827304488;CDX1,2,4:-1.20335884312;XBP1:-1.21198428914;DMAP1_NCOR{1,2}_SMARC:-1.24987721417;E2F1..5:-1.26682934803;MZF1:-1.27631054064;FOXP3:-1.27688925133;TGIF1:-1.31104967537;YY1:-1.31629635915;EGR1..3:-1.32672232717;AHR_ARNT_ARNT2:-1.33303139296;FOX{I1,J2}:-1.34507866265;ELF1,2,4:-1.36613953472;NANOG{mouse}:-1.36883775857;BPTF:-1.39666183202;EN1,2:-1.45110555233;CREB1:-1.46152369798;SREBF1,2:-1.5624607342;BREu{core}:-1.62143066784;TFDP1:-1.64126406643;NRF1:-1.69247097935;GATA4:-1.73025433476;ELK1,4_GABP{A,B1}:-1.7661415846;FOXD3:-2.11718277418;STAT1,3:-2.30258095489 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11600-120H7;search_select_hide=table117:FF:11600-120H7 | |||
}} | }} |
Latest revision as of 18:11, 4 June 2020
Name: | Urothelial Cells, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12091 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12091
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12091
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.283 |
10 | 10 | 0.872 |
100 | 100 | 0.744 |
101 | 101 | 0.921 |
102 | 102 | 0.591 |
103 | 103 | 0.158 |
104 | 104 | 0.399 |
105 | 105 | 0.0732 |
106 | 106 | 0.0109 |
107 | 107 | 0.0187 |
108 | 108 | 0.298 |
109 | 109 | 0.0996 |
11 | 11 | 0.0807 |
110 | 110 | 0.224 |
111 | 111 | 0.154 |
112 | 112 | 0.29 |
113 | 113 | 0.464 |
114 | 114 | 0.151 |
115 | 115 | 0.719 |
116 | 116 | 0.438 |
117 | 117 | 0.476 |
118 | 118 | 0.663 |
119 | 119 | 0.0853 |
12 | 12 | 0.776 |
120 | 120 | 0.0509 |
121 | 121 | 0.409 |
122 | 122 | 0.254 |
123 | 123 | 0.317 |
124 | 124 | 0.989 |
125 | 125 | 0.408 |
126 | 126 | 0.506 |
127 | 127 | 0.0447 |
128 | 128 | 0.0352 |
129 | 129 | 0.0681 |
13 | 13 | 0.217 |
130 | 130 | 0.869 |
131 | 131 | 0.947 |
132 | 132 | 0.195 |
133 | 133 | 0.0264 |
134 | 134 | 0.45 |
135 | 135 | 0.0172 |
136 | 136 | 0.692 |
137 | 137 | 0.699 |
138 | 138 | 0.439 |
139 | 139 | 0.117 |
14 | 14 | 0.631 |
140 | 140 | 0.0599 |
141 | 141 | 0.396 |
142 | 142 | 0.0379 |
143 | 143 | 0.0612 |
144 | 144 | 0.945 |
145 | 145 | 0.119 |
146 | 146 | 0.144 |
147 | 147 | 0.143 |
148 | 148 | 0.217 |
149 | 149 | 0.145 |
15 | 15 | 0.223 |
150 | 150 | 0.391 |
151 | 151 | 0.179 |
152 | 152 | 0.0661 |
153 | 153 | 0.85 |
154 | 154 | 0.834 |
155 | 155 | 0.372 |
156 | 156 | 0.0123 |
157 | 157 | 0.538 |
158 | 158 | 0.933 |
159 | 159 | 0.671 |
16 | 16 | 0.172 |
160 | 160 | 0.0555 |
161 | 161 | 0.421 |
162 | 162 | 0.291 |
163 | 163 | 0.837 |
164 | 164 | 0.822 |
165 | 165 | 0.772 |
166 | 166 | 0.863 |
167 | 167 | 0.743 |
168 | 168 | 0.443 |
169 | 169 | 0.0298 |
17 | 17 | 0.0753 |
18 | 18 | 0.082 |
19 | 19 | 0.329 |
2 | 2 | 0.238 |
20 | 20 | 0.641 |
21 | 21 | 0.773 |
22 | 22 | 0.247 |
23 | 23 | 0.0592 |
24 | 24 | 0.291 |
25 | 25 | 0.979 |
26 | 26 | 0.186 |
27 | 27 | 0.177 |
28 | 28 | 0.924 |
29 | 29 | 0.502 |
3 | 3 | 0.258 |
30 | 30 | 0.315 |
31 | 31 | 0.36 |
32 | 32 | 0.293 |
33 | 33 | 0.542 |
34 | 34 | 0.457 |
35 | 35 | 0.698 |
36 | 36 | 0.238 |
37 | 37 | 0.301 |
38 | 38 | 0.235 |
39 | 39 | 0.274 |
4 | 4 | 0.351 |
40 | 40 | 0.0427 |
41 | 41 | 0.522 |
42 | 42 | 0.585 |
43 | 43 | 0.234 |
44 | 44 | 0.149 |
45 | 45 | 0.218 |
46 | 46 | 0.134 |
47 | 47 | 0.209 |
48 | 48 | 0.197 |
49 | 49 | 0.224 |
5 | 5 | 0.469 |
50 | 50 | 0.583 |
51 | 51 | 0.4 |
52 | 52 | 0.266 |
53 | 53 | 0.806 |
54 | 54 | 0.329 |
55 | 55 | 0.297 |
56 | 56 | 0.378 |
57 | 57 | 0.234 |
58 | 58 | 0.519 |
59 | 59 | 0.042 |
6 | 6 | 0.632 |
60 | 60 | 0.137 |
61 | 61 | 0.796 |
62 | 62 | 0.355 |
63 | 63 | 0.149 |
64 | 64 | 0.173 |
65 | 65 | 0.0449 |
66 | 66 | 0.731 |
67 | 67 | 0.36 |
68 | 68 | 0.706 |
69 | 69 | 0.142 |
7 | 7 | 0.499 |
70 | 70 | 0.00173 |
71 | 71 | 0.146 |
72 | 72 | 0.721 |
73 | 73 | 0.124 |
74 | 74 | 0.466 |
75 | 75 | 0.258 |
76 | 76 | 0.767 |
77 | 77 | 0.0359 |
78 | 78 | 0.123 |
79 | 79 | 0.118 |
8 | 8 | 0.0863 |
80 | 80 | 0.67 |
81 | 81 | 0.465 |
82 | 82 | 0.16 |
83 | 83 | 0.322 |
84 | 84 | 0.659 |
85 | 85 | 0.0567 |
86 | 86 | 0.833 |
87 | 87 | 0.55 |
88 | 88 | 0.204 |
89 | 89 | 0.018 |
9 | 9 | 0.528 |
90 | 90 | 0.917 |
91 | 91 | 0.0657 |
92 | 92 | 0.099 |
93 | 93 | 0.543 |
94 | 94 | 0.0823 |
95 | 95 | 0.245 |
96 | 96 | 0.481 |
97 | 97 | 0.91 |
98 | 98 | 0.152 |
99 | 99 | 0.115 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12091
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000191 human urothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA