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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005048
|DRA_sample_Accession=CAGE@SAMD00005048
|accession_numbers=CAGE;DRX008317;DRR009189;DRZ000614;DRZ001999
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005048
|accession_numbers=CAGE;DRX008317;DRR009189;DRZ000614;DRZ001999;DRZ011964;DRZ013349
|accession_numbers_RNASeq=sRNA-Seq;DRX037174;DRR041540;DRZ007182
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0003566,UBERON:0003891,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0001777,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0003566,UBERON:0003891,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0001777,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002363
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002363
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11607
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.AGTTCC.11607
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.AGTTCC.11607
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11607
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.AGTTCC.11607
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.AGTTCC.11607
|name=Keratocytes, donor2
|name=Keratocytes, donor2
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 78: Line 82:
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|sample_category=primary cells
Line 101: Line 106:
|top_motifs=NR5A1,2:1.83492076144;RXRA_VDR{dimer}:1.53045400439;TFCP2:1.44820743094;STAT5{A,B}:1.37619584944;EBF1:1.33010908413;ZNF238:1.32814785276;ZNF423:1.28657058624;HES1:1.24014043357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.21358037768;GZF1:1.10806465524;GTF2A1,2:1.08166025218;TFAP4:1.03119679078;PBX1:0.897824488157;ESRRA:0.896521249723;HOX{A5,B5}:0.874832074876;bHLH_family:0.8643329232;TLX1..3_NFIC{dimer}:0.79790939408;LHX3,4:0.780119093895;GLI1..3:0.766413139092;ZNF148:0.761256259161;NKX2-2,8:0.716630690983;RXR{A,B,G}:0.680980613964;HAND1,2:0.640085843402;GFI1B:0.595804197381;POU2F1..3:0.555563993931;PAX5:0.544452300441;NFE2L1:0.532067077945;ESR1:0.51889285202;TAL1_TCF{3,4,12}:0.503474095798;ZBTB6:0.457495344844;AR:0.439759771461;NR1H4:0.438424794961;XCPE1{core}:0.398748683903;TP53:0.375941882639;MTF1:0.356848001328;HNF4A_NR2F1,2:0.33526857269;BACH2:0.32575955181;HIC1:0.30698354614;TBP:0.292313240911;TFAP2{A,C}:0.29022713254;TBX4,5:0.280653653677;POU1F1:0.270967849862;TOPORS:0.263570994563;CRX:0.252043803003;NR3C1:0.250557115123;POU5F1:0.241566690922;NFE2L2:0.241245852997;PPARG:0.240629017226;GFI1:0.237590543179;IKZF1:0.223179073645;TFAP2B:0.212676725498;FOS_FOS{B,L1}_JUN{B,D}:0.203814007718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.199419312763;RREB1:0.18213377158;PAX1,9:0.177151267597;NANOG:0.167298647102;LMO2:0.160715639734;HNF1A:0.131326107375;CEBPA,B_DDIT3:0.12785262913;NFE2:0.123534859596;REST:0.119856334846;TEAD1:0.107796364661;PRRX1,2:0.107739127024;HOX{A6,A7,B6,B7}:0.105627546339;ZIC1..3:0.100518997905;MYB:0.0876058316612;SP1:0.0729256653791;GTF2I:0.0692198497435;KLF4:0.0670420848612;MYOD1:0.044425031123;HMX1:0.0295339095419;TFDP1:0.0216015135355;MYBL2:0.0187787602569;NFY{A,B,C}:0.0142544055252;UFEwm:0.0114465466305;GATA6:-0.00566347185418;ATF6:-0.00566380047683;NFIX:-0.00993094668653;ALX4:-0.0143740151891;EN1,2:-0.0175329431832;HLF:-0.02252000405;SPZ1:-0.0235687347418;SOX{8,9,10}:-0.0321521014921;VSX1,2:-0.0688052603896;POU3F1..4:-0.0692289715655;NHLH1,2:-0.111339985481;NKX2-3_NKX2-5:-0.115855768225;SOX5:-0.131811315611;RORA:-0.133717329626;FOSL2:-0.137635043679;HOXA9_MEIS1:-0.141418152485;NR6A1:-0.147997407407;SOX17:-0.166622676265;MEF2{A,B,C,D}:-0.169821593769;NANOG{mouse}:-0.177108538099;PAX3,7:-0.178915321966;POU6F1:-0.185022858294;LEF1_TCF7_TCF7L1,2:-0.197678861663;E2F1..5:-0.201242206643;RUNX1..3:-0.20984883514;HOX{A4,D4}:-0.211491588921;FOXL1:-0.220757812233;YY1:-0.233647063992;CUX2:-0.240481459527;NFATC1..3:-0.241431763426;NFKB1_REL_RELA:-0.251559594264;DBP:-0.26113811625;NKX3-1:-0.274688922684;OCT4_SOX2{dimer}:-0.281455188193;FOX{I1,J2}:-0.285910118843;RFX1:-0.29448572514;ZNF143:-0.31561315796;SRF:-0.320740826939;FOXD3:-0.332019515103;SNAI1..3:-0.336458847336;BREu{core}:-0.344712927632;STAT2,4,6:-0.350051309701;ONECUT1,2:-0.356652846605;GCM1,2:-0.414433529639;NKX6-1,2:-0.439515175419;ETS1,2:-0.445464003872;T:-0.458331943684;FOXQ1:-0.467872291262;PATZ1:-0.468302013863;HIF1A:-0.47926373097;FOX{F1,F2,J1}:-0.500824360334;XBP1:-0.508177226566;ADNP_IRX_SIX_ZHX:-0.519301003712;AHR_ARNT_ARNT2:-0.537192667361;SMAD1..7,9:-0.546398807724;PAX6:-0.552707414745;MZF1:-0.558216719811;SPIB:-0.55926085652;NKX2-1,4:-0.560591075123;MYFfamily:-0.563894980482;JUN:-0.56782859837;NFIL3:-0.572737531313;FOXA2:-0.579916318855;SPI1:-0.581446985593;MED-1{core}:-0.591540616242;TEF:-0.592167163609;EGR1..3:-0.598575278091;EP300:-0.619572265986;CDC5L:-0.648060179085;FOXP3:-0.65569247439;TGIF1:-0.659752651323;PRDM1:-0.672954425633;ATF2:-0.691496993389;NKX3-2:-0.716036927832;ZEB1:-0.720010593687;TLX2:-0.721445264173;FOXM1:-0.746453567439;MTE{core}:-0.748086744992;NRF1:-0.754344370129;ATF5_CREB3:-0.768331567673;PITX1..3:-0.774042220738;MAFB:-0.794997487178;MAZ:-0.835499528104;RFX2..5_RFXANK_RFXAP:-0.83794627462;CREB1:-0.853001124061;ARID5B:-0.855369603746;PAX8:-0.858419442681;SOX2:-0.865447209803;ZNF384:-0.872618730016;HSF1,2:-0.876650612883;AIRE:-0.883237476071;ELK1,4_GABP{A,B1}:-0.907147324908;DMAP1_NCOR{1,2}_SMARC:-0.935507477807;CDX1,2,4:-0.938450810554;HBP1_HMGB_SSRP1_UBTF:-0.955141179114;IRF1,2:-0.96182520641;PAX2:-0.967557445245;EVI1:-0.978191028188;GATA4:-0.980592981737;ELF1,2,4:-0.997056134082;IRF7:-1.03359271661;FOXO1,3,4:-1.03863064702;FOX{D1,D2}:-1.08300881711;PAX4:-1.08520627123;ZFP161:-1.08850301726;FOXP1:-1.09375508582;ALX1:-1.12111061304;ATF4:-1.26484538545;ZBTB16:-1.29917925632;IKZF2:-1.40279219917;STAT1,3:-1.41728549501;HMGA1,2:-1.45328038227;BPTF:-1.49775930872;PDX1:-1.52996906084;SREBF1,2:-1.70827028175;FOXN1:-2.09708180385;RBPJ:-2.21403206784
|top_motifs=NR5A1,2:1.83492076144;RXRA_VDR{dimer}:1.53045400439;TFCP2:1.44820743094;STAT5{A,B}:1.37619584944;EBF1:1.33010908413;ZNF238:1.32814785276;ZNF423:1.28657058624;HES1:1.24014043357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.21358037768;GZF1:1.10806465524;GTF2A1,2:1.08166025218;TFAP4:1.03119679078;PBX1:0.897824488157;ESRRA:0.896521249723;HOX{A5,B5}:0.874832074876;bHLH_family:0.8643329232;TLX1..3_NFIC{dimer}:0.79790939408;LHX3,4:0.780119093895;GLI1..3:0.766413139092;ZNF148:0.761256259161;NKX2-2,8:0.716630690983;RXR{A,B,G}:0.680980613964;HAND1,2:0.640085843402;GFI1B:0.595804197381;POU2F1..3:0.555563993931;PAX5:0.544452300441;NFE2L1:0.532067077945;ESR1:0.51889285202;TAL1_TCF{3,4,12}:0.503474095798;ZBTB6:0.457495344844;AR:0.439759771461;NR1H4:0.438424794961;XCPE1{core}:0.398748683903;TP53:0.375941882639;MTF1:0.356848001328;HNF4A_NR2F1,2:0.33526857269;BACH2:0.32575955181;HIC1:0.30698354614;TBP:0.292313240911;TFAP2{A,C}:0.29022713254;TBX4,5:0.280653653677;POU1F1:0.270967849862;TOPORS:0.263570994563;CRX:0.252043803003;NR3C1:0.250557115123;POU5F1:0.241566690922;NFE2L2:0.241245852997;PPARG:0.240629017226;GFI1:0.237590543179;IKZF1:0.223179073645;TFAP2B:0.212676725498;FOS_FOS{B,L1}_JUN{B,D}:0.203814007718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.199419312763;RREB1:0.18213377158;PAX1,9:0.177151267597;NANOG:0.167298647102;LMO2:0.160715639734;HNF1A:0.131326107375;CEBPA,B_DDIT3:0.12785262913;NFE2:0.123534859596;REST:0.119856334846;TEAD1:0.107796364661;PRRX1,2:0.107739127024;HOX{A6,A7,B6,B7}:0.105627546339;ZIC1..3:0.100518997905;MYB:0.0876058316612;SP1:0.0729256653791;GTF2I:0.0692198497435;KLF4:0.0670420848612;MYOD1:0.044425031123;HMX1:0.0295339095419;TFDP1:0.0216015135355;MYBL2:0.0187787602569;NFY{A,B,C}:0.0142544055252;UFEwm:0.0114465466305;GATA6:-0.00566347185418;ATF6:-0.00566380047683;NFIX:-0.00993094668653;ALX4:-0.0143740151891;EN1,2:-0.0175329431832;HLF:-0.02252000405;SPZ1:-0.0235687347418;SOX{8,9,10}:-0.0321521014921;VSX1,2:-0.0688052603896;POU3F1..4:-0.0692289715655;NHLH1,2:-0.111339985481;NKX2-3_NKX2-5:-0.115855768225;SOX5:-0.131811315611;RORA:-0.133717329626;FOSL2:-0.137635043679;HOXA9_MEIS1:-0.141418152485;NR6A1:-0.147997407407;SOX17:-0.166622676265;MEF2{A,B,C,D}:-0.169821593769;NANOG{mouse}:-0.177108538099;PAX3,7:-0.178915321966;POU6F1:-0.185022858294;LEF1_TCF7_TCF7L1,2:-0.197678861663;E2F1..5:-0.201242206643;RUNX1..3:-0.20984883514;HOX{A4,D4}:-0.211491588921;FOXL1:-0.220757812233;YY1:-0.233647063992;CUX2:-0.240481459527;NFATC1..3:-0.241431763426;NFKB1_REL_RELA:-0.251559594264;DBP:-0.26113811625;NKX3-1:-0.274688922684;OCT4_SOX2{dimer}:-0.281455188193;FOX{I1,J2}:-0.285910118843;RFX1:-0.29448572514;ZNF143:-0.31561315796;SRF:-0.320740826939;FOXD3:-0.332019515103;SNAI1..3:-0.336458847336;BREu{core}:-0.344712927632;STAT2,4,6:-0.350051309701;ONECUT1,2:-0.356652846605;GCM1,2:-0.414433529639;NKX6-1,2:-0.439515175419;ETS1,2:-0.445464003872;T:-0.458331943684;FOXQ1:-0.467872291262;PATZ1:-0.468302013863;HIF1A:-0.47926373097;FOX{F1,F2,J1}:-0.500824360334;XBP1:-0.508177226566;ADNP_IRX_SIX_ZHX:-0.519301003712;AHR_ARNT_ARNT2:-0.537192667361;SMAD1..7,9:-0.546398807724;PAX6:-0.552707414745;MZF1:-0.558216719811;SPIB:-0.55926085652;NKX2-1,4:-0.560591075123;MYFfamily:-0.563894980482;JUN:-0.56782859837;NFIL3:-0.572737531313;FOXA2:-0.579916318855;SPI1:-0.581446985593;MED-1{core}:-0.591540616242;TEF:-0.592167163609;EGR1..3:-0.598575278091;EP300:-0.619572265986;CDC5L:-0.648060179085;FOXP3:-0.65569247439;TGIF1:-0.659752651323;PRDM1:-0.672954425633;ATF2:-0.691496993389;NKX3-2:-0.716036927832;ZEB1:-0.720010593687;TLX2:-0.721445264173;FOXM1:-0.746453567439;MTE{core}:-0.748086744992;NRF1:-0.754344370129;ATF5_CREB3:-0.768331567673;PITX1..3:-0.774042220738;MAFB:-0.794997487178;MAZ:-0.835499528104;RFX2..5_RFXANK_RFXAP:-0.83794627462;CREB1:-0.853001124061;ARID5B:-0.855369603746;PAX8:-0.858419442681;SOX2:-0.865447209803;ZNF384:-0.872618730016;HSF1,2:-0.876650612883;AIRE:-0.883237476071;ELK1,4_GABP{A,B1}:-0.907147324908;DMAP1_NCOR{1,2}_SMARC:-0.935507477807;CDX1,2,4:-0.938450810554;HBP1_HMGB_SSRP1_UBTF:-0.955141179114;IRF1,2:-0.96182520641;PAX2:-0.967557445245;EVI1:-0.978191028188;GATA4:-0.980592981737;ELF1,2,4:-0.997056134082;IRF7:-1.03359271661;FOXO1,3,4:-1.03863064702;FOX{D1,D2}:-1.08300881711;PAX4:-1.08520627123;ZFP161:-1.08850301726;FOXP1:-1.09375508582;ALX1:-1.12111061304;ATF4:-1.26484538545;ZBTB16:-1.29917925632;IKZF2:-1.40279219917;STAT1,3:-1.41728549501;HMGA1,2:-1.45328038227;BPTF:-1.49775930872;PDX1:-1.52996906084;SREBF1,2:-1.70827028175;FOXN1:-2.09708180385;RBPJ:-2.21403206784
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11607-120I5;search_select_hide=table117:FF:11607-120I5
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Keratocytes, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12095
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typekeratocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005048
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12095 CAGE DRX008317 DRR009189
Accession ID Hg19

Library idBAMCTSS
CNhs12095 DRZ000614 DRZ001999
Accession ID Hg38

Library idBAMCTSS
CNhs12095 DRZ011964 DRZ013349
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005048
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.AGTTCC sRNA-Seq DRX037174 DRR041540
Accession ID Hg19

Library idBAMCTSS
SRhi10011.AGTTCC DRZ007182


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0787
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0996
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.095
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.532
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.23
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.615
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.123
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.538
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0115
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00153
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.47
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.256
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.31
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.31
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12095

Jaspar motifP-value
MA0002.20.0208
MA0003.10.173
MA0004.10.35
MA0006.10.641
MA0007.10.0193
MA0009.10.946
MA0014.10.894
MA0017.10.0636
MA0018.25.4157e-4
MA0019.10.931
MA0024.10.104
MA0025.10.337
MA0027.10.49
MA0028.10.11
MA0029.10.316
MA0030.10.1
MA0031.10.00575
MA0035.20.109
MA0038.10.515
MA0039.20.178
MA0040.10.436
MA0041.10.17
MA0042.10.797
MA0043.10.00197
MA0046.10.171
MA0047.20.571
MA0048.10.444
MA0050.11.02621e-6
MA0051.15.00046e-4
MA0052.10.199
MA0055.10.103
MA0057.10.0785
MA0058.10.506
MA0059.10.0962
MA0060.10.0539
MA0061.10.524
MA0062.20.00341
MA0065.20.00616
MA0066.10.0602
MA0067.10.161
MA0068.10.0922
MA0069.10.448
MA0070.10.0277
MA0071.10.00366
MA0072.10.222
MA0073.10.893
MA0074.10.308
MA0076.10.0047
MA0077.10.4
MA0078.10.64
MA0079.20.767
MA0080.20.00372
MA0081.10.263
MA0083.10.787
MA0084.10.691
MA0087.10.813
MA0088.10.169
MA0090.10.486
MA0091.10.0154
MA0092.10.368
MA0093.10.474
MA0099.24.43268e-7
MA0100.10.554
MA0101.10.903
MA0102.20.00666
MA0103.10.695
MA0104.20.497
MA0105.10.38
MA0106.10.0255
MA0107.10.861
MA0108.20.0493
MA0111.10.592
MA0112.20.00844
MA0113.10.0388
MA0114.10.0373
MA0115.10.695
MA0116.10.114
MA0117.10.153
MA0119.10.067
MA0122.10.669
MA0124.10.29
MA0125.10.729
MA0131.10.377
MA0135.10.0375
MA0136.12.09558e-4
MA0137.20.0361
MA0138.20.0216
MA0139.10.606
MA0140.10.221
MA0141.10.00199
MA0142.10.784
MA0143.10.993
MA0144.10.927
MA0145.10.192
MA0146.10.0254
MA0147.10.269
MA0148.10.415
MA0149.10.127
MA0150.10.203
MA0152.10.848
MA0153.10.321
MA0154.10.124
MA0155.10.0983
MA0156.10.00442
MA0157.10.301
MA0159.10.408
MA0160.10.0292
MA0162.10.118
MA0163.10.0138
MA0164.10.784
MA0258.10.0347
MA0259.10.71



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12095

Novel motifP-value
10.315
100.919
1000.4
1010.768
1020.856
1030.157
1040.187
1050.0639
1060.114
1070.0804
1080.389
1090.0282
110.0127
1100.0796
1110.555
1120.35
1130.297
1140.507
1150.805
1160.133
1170.416
1180.647
1190.355
120.43
1200.171
1210.594
1220.815
1230.812
1240.593
1250.706
1260.666
1270.218
1280.0495
1290.373
130.357
1300.319
1310.819
1320.126
1330.457
1340.27
1350.748
1360.999
1370.172
1380.699
1390.413
140.934
1400.267
1410.55
1420.0889
1430.0303
1440.571
1450.136
1460.156
1470.235
1480.128
1490.0477
150.371
1500.421
1510.396
1520.145
1530.914
1540.457
1550.5
1560.11
1570.0836
1580.343
1590.829
160.257
1600.0441
1610.159
1620.141
1630.666
1640.494
1650.327
1660.728
1670.303
1680.489
1690.039
170.148
180.0684
190.105
20.217
200.604
210.738
220.0791
230.116
240.381
250.749
260.0571
270.124
280.315
290.644
30.304
300.22
310.396
325.81595e-4
330.888
340.222
350.84
360.571
370.208
380.221
390.607
40.249
400.0472
410.713
420.563
430.135
440.713
450.351
460.0877
470.175
480.105
490.121
50.479
500.501
510.201
520.565
530.908
540.259
550.521
560.226
570.3
580.819
590.0397
60.948
600.265
610.485
620.745
630.13
640.0525
650.0176
660.308
670.841
680.0383
690.0382
70.546
700.0254
710.177
720.973
730.0563
740.689
750.674
760.7
770.0241
780.748
790.159
80.0185
800.827
810.302
820.376
830.695
840.467
850.0903
860.874
870.176
880.305
890.0322
90.161
900.807
910.26
920.303
930.135
940.12
950.0988
960.178
970.866
980.146
990.0103



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12095


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002363 (keratocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0003566 (head connective tissue)
0003891 (stroma)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0001777 (substantia propria of cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000084 (human keratocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)
CL:0000008 (migratory cranial neural crest cell)

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