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(Created page with "{{f5samples |id=FF:11782-124A9 |name=CD4+CD25+CD45RA- naive regulatory T cells, donor1 |sample_id=11782 |rna_tube_id=124A9 |rna_box=124 |rna_position=A9 |sample_cell_lo...")
 
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{{f5samples
{{f5samples
|id=FF:11782-124A9
|DRA_sample_Accession=CAGE@SAMD00005031
|name=CD4+CD25+CD45RA- naive regulatory T cells, donor1
|accession_numbers=CAGE;DRX008184;DRR009056;DRZ000481;DRZ001866;DRZ011831;DRZ013216
|sample_id=11782
|ancestors_in_anatomy_facet=
|rna_tube_id=124A9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000815,CL:0000898,CL:0000792,CL:0002677
|rna_box=124
|rna_position=A9
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=2.00000
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=25
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.71000
|rna_od260/280=1.95000
|sample_cell_type=T cell
|sample_cell_line=
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=1.25380
|rna_concentration=0.12538
|sample_note=
|profile_hcage=CNhs13195,LSID1004,release012,MAPPING
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000792,CL:0000815,CL:0000827,CL:0000837,CL:0000838,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002677
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 
|comment=Previously: CD4-positiveCD25-positiveCD45RA- naive regulatory T cells, donor1. TODO: full classification
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.37!234.21!FOXP3;;chr6:106546808..106546833,+!p3@PRDM1!1.98!119.02!PRDM1;;chr10:35484053..35484076,+!p1@CREM!1.96!215.65!CREM;;chr3:63953435..63953499,+!p1@ATXN7!1.85!70.12!ATXN7;;chr1:25256756..25256774,-!p1@RUNX3!1.82!118.73!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.76!68.05!GATA3;;chrX:106960285..106960299,-!p1@TSC22D3!1.71!1260.62!TSC22D3;;chr3:71355163..71355209,-!p5@FOXP1!1.71!69.23!FOXP1;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.08!ZNF331;;chr19:54041669..54041697,+!p2@ZNF331!1.70!49.49!ZNF331;;chr10:35484090..35484104,+!p6@CREM!1.70!48.61!CREM;;chr6:106546834..106546850,+!p4@PRDM1!1.67!46.25!PRDM1;;chr2:231090433..231090469,+!p1@SP140!1.66!44.19!SP140;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.90!IKZF1;;chr4:109087445..109087463,-!p1@LEF1!1.62!40.66!LEF1;;chr15:60884706..60884743,-!p1@RORA!1.59!187.37!RORA;;chr6:391743..391759,+!p1@IRF4!1.59!38.30!IRF4;;chr14:75988771..75988826,+!p1@BATF!1.55!45.66!BATF;;chr19:16435625..16435682,+!p1@KLF2!1.54!1022.87!KLF2;;chrY:21906594..21906622,-!p1@KDM5D!1.54!33.29!KDM5D;;chr2:157189180..157189290,-!p1@NR4A2!1.53!166.45!NR4A2;;chr17:37934365..37934387,-!p2@IKZF3!1.49!30.05!IKZF3;;chr8:60031619..60031676,-!p1@TOX!1.48!61.87!TOX;;chr14:75988831..75988847,+!p2@BATF!1.48!28.87!BATF;;chr10:35416142..35416169,+!p3@CREM!1.43!67.46!CREM;;chr2:192015701..192015743,-!p1@STAT4!1.43!35.35!STAT4;;chr20:56195474..56195506,-!p1@ZBP1!1.40!24.16!ZBP1;;chr2:192015750..192015793,-!p2@STAT4!1.39!31.23!STAT4;;chr19:19779619..19779670,+!p1@ZNF101!1.38!63.93!ZNF101;;chr9:117150254..117150271,-!p1@AKNA!1.37!59.51!AKNA;;chr9:102584262..102584276,+!p1@NR4A3!1.37!49.20!NR4A3;;chr2:231090471..231090504,+!p2@SP140!1.35!21.21!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.33!4465.64!JUNB;;chr6:106546786..106546802,+!p6@PRDM1!1.33!20.33!PRDM1;;chr4:109089901..109089930,-!p3@LEF1!1.30!18.85!LEF1;;chr19:19729477..19729542,-!p1@PBX4!1.25!35.35!PBX4;;chr17:37934204..37934241,-!p3@IKZF3!1.25!16.79!IKZF3;;chr4:109090075..109090095,-!p2@LEF1!1.25!16.79!LEF1;;chr9:3525727..3525828,-!p2@RFX3!1.24!41.83!RFX3;;chr3:71542615..71542644,-!p12@FOXP1!1.24!16.20!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.24!16.20!IKZF1;;chr6:12009042..12009092,+!p6@HIVEP1!1.23!20.92!HIVEP1;;chr11:128392273..128392308,-!p2@ETS1!1.22!64.81!ETS1;;chr6:91006518..91006570,-!p1@BACH2!1.21!35.06!BACH2;;chr10:8096772..8096787,+!p2@GATA3!1.21!17.97!GATA3;;chr13:41593425..41593480,-!p1@ELF1!1.20!92.21!ELF1;;chr4:109088089..109088101,-!p11@LEF1!1.20!15.02!LEF1;;chr19:36204309..36204335,+!p1@ZBTB32!1.19!14.44!ZBTB32;;chr17:38497662..38497713,+!p4@RARA!1.17!16.20!RARA;;chr20:56195525..56195556,-!p2@ZBP1!1.16!13.55!ZBP1;;chr11:128392085..128392232,-!p1@ETS1!1.14!424.82!ETS1;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.56!NFATC2;;chr14:99738138..99738163,-!p1@BCL11B!1.14!12.96!BCL11B;;chr2:97202991..97203043,+!p3@ARID5A!1.14!12.67!ARID5A;;chr6:106546731..106546755,+!p5@PRDM1!1.14!12.67!PRDM1;;chr1:45805693..45805718,+!p3@TOE1!1.13!26.81!TOE1;;chr10:35485013..35485034,+!p15@CREM!1.12!12.08!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.12!12.08!IKZF2;;chr21:36421535..36421610,-!p2@RUNX1!1.11!42.72!RUNX1;;chr9:102584241..102584261,+!p4@NR4A3!1.11!18.56!NR4A3;;chr19:45971246..45971265,+!p1@FOSB!1.10!216.24!FOSB;;chr5:133450365..133450444,+!p1@TCF7!1.09!51.85!TCF7;;chr4:109088130..109088163,-!p13@LEF1!1.09!11.20!LEF1;;chr11:128563948..128564003,+!p1@FLI1!1.08!134.63!FLI1;;chr14:75745523..75745537,+!p1@FOS!1.06!1270.34!FOS;;chrX:106960180..106960197,-!p2@TSC22D3!1.06!40.66!TSC22D3;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.61!IKZF1;;chr12:72056800..72056834,+!p1@THAP2!1.05!13.85!THAP2;;chr10:35416223..35416234,+!p12@CREM!1.05!10.31!CREM;;chr7:77428066..77428132,+!p2@PHTF2!1.04!65.40!PHTF2;;chr2:208394817..208394834,+!p3@CREB1!1.04!40.66!CREB1;;chr16:79634624..79634642,-!p1@MAF!1.04!39.48!MAF;;chr4:109088940..109089037,-!p4@LEF1!1.04!10.02!LEF1;;chr10:35416172..35416184,+!p13@CREM!1.04!10.02!CREM;;chr4:38665769..38665801,+!p2@KLF3!1.03!88.97!KLF3;;chr13:41240717..41240735,-!p2@FOXO1!1.03!66.58!FOXO1;;chr3:23986824..23986848,+!p2@NR1D2!1.02!53.91!NR1D2;;chr14:64971288..64971316,-!p2@ZBTB25!1.02!29.46!ZBTB25;;chr14:64970670..64970712,-!p3@ZBTB25!1.02!20.92!ZBTB25;;chr16:79634595..79634620,-!p2@MAF!1.02!17.38!MAF;;chr10:3824332..3824425,-!p4@KLF6!1.02!15.61!KLF6;;chr3:71542684..71542720,-!p18@FOXP1!1.02!9.43!FOXP1;;chr2:157189617..157189667,-!p4@NR4A2!1.01!9.13!NR4A2;;chr2:97202480..97202499,+!p1@ARID5A!1.00!93.98!ARID5A;;chr19:19779686..19779697,+!p3@ZNF101!0.99!10.31!ZNF101;;chr17:37934280..37934299,-!p6@IKZF3!0.99!8.84!IKZF3;;chr8:60031563..60031574,-!p7@TOX!0.99!8.84!TOX;;chr15:60884747..60884774,-!p3@RORA!0.98!21.51!RORA;;chrX:106960221..106960236,-!p3@TSC22D3!0.97!23.86!TSC22D3;;chr17:56565257..56565283,-!p2@HSF5!0.97!8.25!HSF5;;chr19:54040550..54040594,+!p20@ZNF331!0.97!8.25!ZNF331;;chr10:63809013..63809041,+!p3@ARID5B!0.95!45.66!ARID5B;;chr12:56418637..56418648,+!p9@IKZF4!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg38.nobarcode.ctss.bed.gz
|id=FF:11782-124A9
|is_a=CL:0002677;;EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|library_id=CNhs13195
|library_id_phase_based=2:CNhs13195
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11782
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11782
|name=CD4+CD25+CD45RA- memory regulatory T cells, donor1
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13195,LSID1004,release012,COMPLETED
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|rna_box=124
|rna_catalog_number=
|rna_concentration=0.12538
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=2
|rna_od260/230=1.71
|rna_od260/280=1.95
|rna_position=A9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=124A9
|rna_weight_ug=1.2538
|sample_age=25
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=T cell
|sample_collaboration=Michael Rehli (University of Regensberg)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.07981414210995e-231!GO:0043227;membrane-bound organelle;3.47531153828682e-199!GO:0043231;intracellular membrane-bound organelle;7.78692614394997e-199!GO:0043226;organelle;3.80307666186198e-188!GO:0043229;intracellular organelle;2.04747932432757e-187!GO:0005737;cytoplasm;1.02958776541e-136!GO:0044422;organelle part;1.61927835776317e-117!GO:0044446;intracellular organelle part;6.78037794421879e-116!GO:0005634;nucleus;4.50513201778737e-106!GO:0044237;cellular metabolic process;1.58065118839636e-101!GO:0043170;macromolecule metabolic process;1.1218785829369e-100!GO:0032991;macromolecular complex;5.65722428791953e-100!GO:0044238;primary metabolic process;6.65384315822556e-97!GO:0044444;cytoplasmic part;8.18332038879753e-94!GO:0030529;ribonucleoprotein complex;3.30688997809944e-89!GO:0003723;RNA binding;2.73342840667248e-80!GO:0044428;nuclear part;4.3147400325915e-76!GO:0043283;biopolymer metabolic process;8.79913447476997e-72!GO:0043233;organelle lumen;5.14801796424163e-65!GO:0031974;membrane-enclosed lumen;5.14801796424163e-65!GO:0010467;gene expression;3.00082580160226e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.29893446160971e-57!GO:0005739;mitochondrion;1.30275759679569e-56!GO:0006396;RNA processing;1.2107101707806e-55!GO:0005515;protein binding;3.28624995009681e-53!GO:0006412;translation;1.85537311221434e-52!GO:0043234;protein complex;2.44934159927948e-49!GO:0019538;protein metabolic process;2.76504143912157e-49!GO:0005840;ribosome;4.98234936714268e-49!GO:0016071;mRNA metabolic process;1.18998147449267e-47!GO:0044267;cellular protein metabolic process;1.32643886904229e-47!GO:0031981;nuclear lumen;9.81438623858131e-47!GO:0044260;cellular macromolecule metabolic process;1.58433978792572e-46!GO:0033036;macromolecule localization;1.63129391152564e-44!GO:0003735;structural constituent of ribosome;1.60178787315381e-43!GO:0003676;nucleic acid binding;3.27376243535837e-43!GO:0015031;protein transport;6.32278644493942e-43!GO:0045184;establishment of protein localization;2.62498542334435e-41!GO:0008380;RNA splicing;3.71770825736201e-41!GO:0006397;mRNA processing;4.24484384525437e-41!GO:0008104;protein localization;5.55232593739765e-41!GO:0009059;macromolecule biosynthetic process;1.48252242191997e-40!GO:0044429;mitochondrial part;7.07940655881878e-40!GO:0033279;ribosomal subunit;1.22861790029824e-38!GO:0031090;organelle membrane;1.0278261302966e-37!GO:0031967;organelle envelope;2.70178189836171e-37!GO:0031975;envelope;5.89907524819685e-37!GO:0005829;cytosol;5.30027364216926e-35!GO:0016070;RNA metabolic process;2.29880224925393e-33!GO:0006259;DNA metabolic process;5.67512143853521e-33!GO:0009058;biosynthetic process;5.93651930083509e-32!GO:0044249;cellular biosynthetic process;6.15505475862427e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.81537705096886e-31!GO:0005681;spliceosome;2.60610622122493e-31!GO:0046907;intracellular transport;6.32404798214614e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.12302808117149e-31!GO:0005654;nucleoplasm;1.39811678742406e-29!GO:0006886;intracellular protein transport;1.47812327002094e-29!GO:0065003;macromolecular complex assembly;1.65457113994286e-29!GO:0016043;cellular component organization and biogenesis;2.00038579168239e-28!GO:0044445;cytosolic part;5.66162384007385e-28!GO:0006512;ubiquitin cycle;2.22307306524408e-26!GO:0022607;cellular component assembly;8.06791253201877e-26!GO:0005740;mitochondrial envelope;8.29533713157373e-26!GO:0000166;nucleotide binding;2.0608688776039e-25!GO:0031966;mitochondrial membrane;5.91172373847969e-25!GO:0019866;organelle inner membrane;1.10178823029189e-24!GO:0006996;organelle organization and biogenesis;1.23784447019676e-24!GO:0044451;nucleoplasm part;9.29970049359893e-24!GO:0005743;mitochondrial inner membrane;4.05328875455486e-22!GO:0051641;cellular localization;2.52820270199399e-21!GO:0051649;establishment of cellular localization;3.66566035633613e-21!GO:0006119;oxidative phosphorylation;1.40940178673736e-20!GO:0022618;protein-RNA complex assembly;1.67431281226543e-20!GO:0043412;biopolymer modification;1.68573500106757e-20!GO:0043228;non-membrane-bound organelle;3.22723196418256e-20!GO:0043232;intracellular non-membrane-bound organelle;3.22723196418256e-20!GO:0012501;programmed cell death;3.22969677501168e-20!GO:0006915;apoptosis;3.22969677501168e-20!GO:0044265;cellular macromolecule catabolic process;6.11733331809581e-20!GO:0015935;small ribosomal subunit;6.59143413963632e-20!GO:0015934;large ribosomal subunit;1.00925978650018e-19!GO:0016874;ligase activity;1.05956596519412e-19!GO:0008219;cell death;1.65949818067088e-19!GO:0016265;death;1.65949818067088e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.88988040164811e-19!GO:0016462;pyrophosphatase activity;3.16228567929906e-19!GO:0017111;nucleoside-triphosphatase activity;3.33802339603585e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.67108697821491e-19!GO:0044455;mitochondrial membrane part;4.79182449815381e-19!GO:0019941;modification-dependent protein catabolic process;1.24564488806885e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.24564488806885e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.42399978360347e-18!GO:0006511;ubiquitin-dependent protein catabolic process;3.00898612908722e-18!GO:0044257;cellular protein catabolic process;3.03375813688606e-18!GO:0006464;protein modification process;4.62425146966727e-18!GO:0005730;nucleolus;6.24644845068719e-18!GO:0032553;ribonucleotide binding;6.54307582007326e-18!GO:0032555;purine ribonucleotide binding;6.54307582007326e-18!GO:0043285;biopolymer catabolic process;7.26234301022894e-18!GO:0006974;response to DNA damage stimulus;7.9813974856736e-18!GO:0008134;transcription factor binding;2.28153619956176e-17!GO:0017076;purine nucleotide binding;2.85442766102687e-17!GO:0008135;translation factor activity, nucleic acid binding;4.53846417819268e-17!GO:0031980;mitochondrial lumen;5.8103340900235e-17!GO:0005759;mitochondrial matrix;5.8103340900235e-17!GO:0051276;chromosome organization and biogenesis;6.74161310573817e-17!GO:0006605;protein targeting;7.40626585013181e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.37743695525568e-16!GO:0043687;post-translational protein modification;1.7283141914464e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.07124746044912e-16!GO:0009057;macromolecule catabolic process;3.76627948196356e-16!GO:0016604;nuclear body;3.79032586661315e-16!GO:0006323;DNA packaging;6.34151581823528e-16!GO:0005746;mitochondrial respiratory chain;9.59925984308248e-16!GO:0006281;DNA repair;1.0795292684832e-15!GO:0005524;ATP binding;1.1052232174702e-15!GO:0007049;cell cycle;2.28850238483621e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.43134277027544e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.0948937096777e-15!GO:0016887;ATPase activity;3.93880929765975e-15!GO:0032559;adenyl ribonucleotide binding;4.60060689828841e-15!GO:0042623;ATPase activity, coupled;4.70727059754211e-15!GO:0006913;nucleocytoplasmic transport;6.31714713306238e-15!GO:0006457;protein folding;6.71661006456835e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.38723797831294e-15!GO:0000375;RNA splicing, via transesterification reactions;7.38723797831294e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.38723797831294e-15!GO:0051169;nuclear transport;1.06193527541543e-14!GO:0042981;regulation of apoptosis;1.45146361616079e-14!GO:0043067;regulation of programmed cell death;2.41640049806113e-14!GO:0030554;adenyl nucleotide binding;2.57880879240259e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.87097776488365e-14!GO:0003954;NADH dehydrogenase activity;2.87097776488365e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.87097776488365e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.17345000538196e-14!GO:0030163;protein catabolic process;4.88023511513886e-14!GO:0044248;cellular catabolic process;1.24633538484542e-13!GO:0005694;chromosome;1.54037335357366e-13!GO:0016607;nuclear speck;1.88105565116121e-13!GO:0003743;translation initiation factor activity;2.73417000270624e-13!GO:0012505;endomembrane system;3.46690886420628e-13!GO:0006413;translational initiation;4.67907717935631e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.56329473846163e-13!GO:0042773;ATP synthesis coupled electron transport;8.56329473846163e-13!GO:0050794;regulation of cellular process;1.16171104973902e-12!GO:0065004;protein-DNA complex assembly;1.88340633565744e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.18608593415017e-12!GO:0045271;respiratory chain complex I;2.18608593415017e-12!GO:0005747;mitochondrial respiratory chain complex I;2.18608593415017e-12!GO:0004386;helicase activity;3.9411084186192e-12!GO:0042254;ribosome biogenesis and assembly;5.29668782718271e-12!GO:0044427;chromosomal part;5.92344835925837e-12!GO:0005635;nuclear envelope;6.24639570415436e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.88955369439403e-12!GO:0005761;mitochondrial ribosome;7.06633971656378e-12!GO:0000313;organellar ribosome;7.06633971656378e-12!GO:0008639;small protein conjugating enzyme activity;1.07151611692874e-11!GO:0031965;nuclear membrane;1.34360364803679e-11!GO:0004842;ubiquitin-protein ligase activity;1.65920908685777e-11!GO:0006333;chromatin assembly or disassembly;2.28752416300657e-11!GO:0022402;cell cycle process;2.73132389077272e-11!GO:0019222;regulation of metabolic process;2.73132389077272e-11!GO:0003712;transcription cofactor activity;3.20382970932305e-11!GO:0048770;pigment granule;4.80753619651329e-11!GO:0042470;melanosome;4.80753619651329e-11!GO:0019787;small conjugating protein ligase activity;4.95657833174301e-11!GO:0008026;ATP-dependent helicase activity;4.995265464544e-11!GO:0051082;unfolded protein binding;5.32548715306818e-11!GO:0006446;regulation of translational initiation;6.25791729332891e-11!GO:0016568;chromatin modification;6.48092623815901e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.51760907336571e-11!GO:0009719;response to endogenous stimulus;1.24811625866409e-10!GO:0017038;protein import;1.52043991501528e-10!GO:0044453;nuclear membrane part;1.82395683320396e-10!GO:0048193;Golgi vesicle transport;4.17732414780046e-10!GO:0000785;chromatin;6.18310897531274e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.16704945489047e-09!GO:0051186;cofactor metabolic process;1.20971286201987e-09!GO:0031323;regulation of cellular metabolic process;1.38977057762902e-09!GO:0019829;cation-transporting ATPase activity;1.43122610005604e-09!GO:0051726;regulation of cell cycle;1.85124658681128e-09!GO:0006793;phosphorus metabolic process;1.8534798670867e-09!GO:0006796;phosphate metabolic process;1.8534798670867e-09!GO:0000074;regulation of progression through cell cycle;3.28804337428739e-09!GO:0006403;RNA localization;3.34870097938734e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.54678993559079e-09!GO:0050657;nucleic acid transport;3.56966113449167e-09!GO:0051236;establishment of RNA localization;3.56966113449167e-09!GO:0050658;RNA transport;3.56966113449167e-09!GO:0005643;nuclear pore;4.26685969739608e-09!GO:0016881;acid-amino acid ligase activity;6.01211312946801e-09!GO:0006334;nucleosome assembly;6.31663326834961e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.70833761323833e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.9305886041011e-09!GO:0006350;transcription;1.02575733257748e-08!GO:0031497;chromatin assembly;1.1149084216078e-08!GO:0016072;rRNA metabolic process;1.19619640118754e-08!GO:0006364;rRNA processing;1.52769159230556e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.5303171165958e-08!GO:0005794;Golgi apparatus;2.24088581035883e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.42017866818724e-08!GO:0005768;endosome;2.679169612758e-08!GO:0043566;structure-specific DNA binding;2.74682479986745e-08!GO:0016787;hydrolase activity;2.94741801485268e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.05705955669496e-08!GO:0008270;zinc ion binding;3.1149226215237e-08!GO:0006366;transcription from RNA polymerase II promoter;3.13388042620143e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.27896960410617e-08!GO:0007243;protein kinase cascade;3.42308012347172e-08!GO:0050789;regulation of biological process;3.76090931687348e-08!GO:0032446;protein modification by small protein conjugation;3.85448487165207e-08!GO:0016310;phosphorylation;3.87976243516546e-08!GO:0009259;ribonucleotide metabolic process;4.02734805818421e-08!GO:0005839;proteasome core complex (sensu Eukaryota);5.91197458229002e-08!GO:0008565;protein transporter activity;7.56123629014913e-08!GO:0003713;transcription coactivator activity;7.64846692430194e-08!GO:0006399;tRNA metabolic process;8.73429628236297e-08!GO:0010468;regulation of gene expression;9.17226406305575e-08!GO:0009260;ribonucleotide biosynthetic process;9.69934902112408e-08!GO:0016567;protein ubiquitination;9.93910137618452e-08!GO:0006916;anti-apoptosis;9.9715681399351e-08!GO:0006164;purine nucleotide biosynthetic process;1.03843624201752e-07!GO:0065002;intracellular protein transport across a membrane;1.0936615363232e-07!GO:0043069;negative regulation of programmed cell death;1.30269531404177e-07!GO:0051028;mRNA transport;1.34803853397734e-07!GO:0051170;nuclear import;1.35782660230594e-07!GO:0006732;coenzyme metabolic process;1.46888041854774e-07!GO:0016564;transcription repressor activity;1.48355173030468e-07!GO:0003697;single-stranded DNA binding;1.7933725475861e-07!GO:0006163;purine nucleotide metabolic process;1.81188855540222e-07!GO:0046930;pore complex;1.87293378145145e-07!GO:0004298;threonine endopeptidase activity;1.90055066772287e-07!GO:0043066;negative regulation of apoptosis;1.92078497932752e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.25464436079101e-07!GO:0009056;catabolic process;2.32365682036483e-07!GO:0048523;negative regulation of cellular process;2.39184462486413e-07!GO:0006917;induction of apoptosis;2.3998451676395e-07!GO:0015986;ATP synthesis coupled proton transport;2.40063663829985e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.40063663829985e-07!GO:0006606;protein import into nucleus;2.42191099459189e-07!GO:0031324;negative regulation of cellular metabolic process;2.42191099459189e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.08703570064329e-07!GO:0012502;induction of programmed cell death;3.86524179118424e-07!GO:0009150;purine ribonucleotide metabolic process;4.08808731387709e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.20409119562931e-07!GO:0051246;regulation of protein metabolic process;4.74051412875769e-07!GO:0043065;positive regulation of apoptosis;4.80899852287194e-07!GO:0000151;ubiquitin ligase complex;7.69364493289691e-07!GO:0043068;positive regulation of programmed cell death;7.85247188993615e-07!GO:0009055;electron carrier activity;8.13680698159238e-07!GO:0016740;transferase activity;8.42732640888925e-07!GO:0009060;aerobic respiration;8.59499155825721e-07!GO:0000278;mitotic cell cycle;9.28792759117734e-07!GO:0016563;transcription activator activity;9.68381131990777e-07!GO:0016779;nucleotidyltransferase activity;9.68381131990777e-07!GO:0044432;endoplasmic reticulum part;1.06397770707715e-06!GO:0000245;spliceosome assembly;1.09638563904414e-06!GO:0032774;RNA biosynthetic process;1.15716478936452e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.32509880486016e-06!GO:0015399;primary active transmembrane transporter activity;1.32509880486016e-06!GO:0006754;ATP biosynthetic process;1.41538239031281e-06!GO:0006753;nucleoside phosphate metabolic process;1.41538239031281e-06!GO:0006351;transcription, DNA-dependent;1.43634963479432e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.47705757278267e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.47705757278267e-06!GO:0016192;vesicle-mediated transport;1.52153794077512e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.55950406321117e-06!GO:0005783;endoplasmic reticulum;1.68092031977953e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.76409900864875e-06!GO:0051168;nuclear export;2.04459928637604e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.18842925868197e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.18842925868197e-06!GO:0065009;regulation of a molecular function;2.3221363622651e-06!GO:0006260;DNA replication;2.43129527654602e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.51234977117965e-06!GO:0003724;RNA helicase activity;2.53461983345799e-06!GO:0051188;cofactor biosynthetic process;2.54332295020587e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.11503696766395e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.26964524199432e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.83951605693682e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.09968184072709e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.1664371723848e-06!GO:0048519;negative regulation of biological process;4.23267626627593e-06!GO:0009892;negative regulation of metabolic process;4.4833990432299e-06!GO:0045259;proton-transporting ATP synthase complex;4.4833990432299e-06!GO:0005789;endoplasmic reticulum membrane;4.5310806874345e-06!GO:0009199;ribonucleoside triphosphate metabolic process;4.652596700579e-06!GO:0045786;negative regulation of progression through cell cycle;4.6993103702886e-06!GO:0007005;mitochondrion organization and biogenesis;4.90259327154699e-06!GO:0045333;cellular respiration;4.91546670138783e-06!GO:0019899;enzyme binding;4.95167965335375e-06!GO:0045449;regulation of transcription;5.30844115529321e-06!GO:0009141;nucleoside triphosphate metabolic process;5.30844115529321e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.59959086839333e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.70252619173188e-06!GO:0009144;purine nucleoside triphosphate metabolic process;6.70252619173188e-06!GO:0046034;ATP metabolic process;7.50229374314503e-06!GO:0046914;transition metal ion binding;8.01972133463447e-06!GO:0006613;cotranslational protein targeting to membrane;1.35251662261004e-05!GO:0016481;negative regulation of transcription;1.55312449617682e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.64863670244549e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.64863670244549e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.64863670244549e-05!GO:0000786;nucleosome;1.93651112916261e-05!GO:0006401;RNA catabolic process;2.10619336733357e-05!GO:0030120;vesicle coat;2.79352767480659e-05!GO:0030662;coated vesicle membrane;2.79352767480659e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.98892250651078e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.13784067773489e-05!GO:0043038;amino acid activation;3.19742982839503e-05!GO:0006418;tRNA aminoacylation for protein translation;3.19742982839503e-05!GO:0043039;tRNA aminoacylation;3.19742982839503e-05!GO:0005813;centrosome;3.26348998028599e-05!GO:0016363;nuclear matrix;3.40251175111881e-05!GO:0065007;biological regulation;3.60924096359313e-05!GO:0003677;DNA binding;3.61830004524583e-05!GO:0048475;coated membrane;3.95226674563206e-05!GO:0030117;membrane coat;3.95226674563206e-05!GO:0005793;ER-Golgi intermediate compartment;4.05268326710581e-05!GO:0009108;coenzyme biosynthetic process;4.09951736910522e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.19449038304428e-05!GO:0008186;RNA-dependent ATPase activity;4.41896528778702e-05!GO:0006355;regulation of transcription, DNA-dependent;4.50121771911258e-05!GO:0004674;protein serine/threonine kinase activity;4.59039136971915e-05!GO:0006099;tricarboxylic acid cycle;6.16092098548706e-05!GO:0046356;acetyl-CoA catabolic process;6.16092098548706e-05!GO:0022403;cell cycle phase;6.26989983785702e-05!GO:0006612;protein targeting to membrane;6.27842227661053e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.45140381685785e-05!GO:0006402;mRNA catabolic process;6.96802212825743e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;6.97072855671421e-05!GO:0007242;intracellular signaling cascade;7.01304323972318e-05!GO:0006417;regulation of translation;7.2763711217314e-05!GO:0008234;cysteine-type peptidase activity;7.47023503755369e-05!GO:0006310;DNA recombination;7.57944156850621e-05!GO:0006461;protein complex assembly;7.59717213906347e-05!GO:0006752;group transfer coenzyme metabolic process;8.08252290159514e-05!GO:0005770;late endosome;9.14047489277497e-05!GO:0005815;microtubule organizing center;9.59630405507609e-05!GO:0044431;Golgi apparatus part;0.00010095343424623!GO:0005762;mitochondrial large ribosomal subunit;0.000103601919951162!GO:0000315;organellar large ribosomal subunit;0.000103601919951162!GO:0006084;acetyl-CoA metabolic process;0.000104562216623719!GO:0051301;cell division;0.000116107280833106!GO:0005773;vacuole;0.000116107280833106!GO:0005525;GTP binding;0.000126569974455576!GO:0004004;ATP-dependent RNA helicase activity;0.000138437408678888!GO:0060090;molecular adaptor activity;0.000151442179913246!GO:0044440;endosomal part;0.000162640139055058!GO:0010008;endosome membrane;0.000162640139055058!GO:0000087;M phase of mitotic cell cycle;0.000168104451852511!GO:0003714;transcription corepressor activity;0.000172232732361164!GO:0008654;phospholipid biosynthetic process;0.000208623876226226!GO:0007067;mitosis;0.000220316087749468!GO:0005885;Arp2/3 protein complex;0.000225038172510525!GO:0043021;ribonucleoprotein binding;0.000236380953461154!GO:0003690;double-stranded DNA binding;0.000274474044120482!GO:0031326;regulation of cellular biosynthetic process;0.000274932202904156!GO:0030384;phosphoinositide metabolic process;0.000290975432429398!GO:0006261;DNA-dependent DNA replication;0.000296127463988309!GO:0051427;hormone receptor binding;0.000337053224028067!GO:0003729;mRNA binding;0.000338855070476085!GO:0009109;coenzyme catabolic process;0.000355511028531463!GO:0019843;rRNA binding;0.000360989462692875!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000362315395178446!GO:0005769;early endosome;0.000367995240040393!GO:0048522;positive regulation of cellular process;0.000374358711138756!GO:0006352;transcription initiation;0.0003760698693754!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000381431628584803!GO:0008632;apoptotic program;0.00039076535599519!GO:0005667;transcription factor complex;0.000392117284819286!GO:0042110;T cell activation;0.000412860615980901!GO:0006891;intra-Golgi vesicle-mediated transport;0.000419479326198203!GO:0000323;lytic vacuole;0.000419479326198203!GO:0005764;lysosome;0.000419479326198203!GO:0009615;response to virus;0.000419852722303841!GO:0008168;methyltransferase activity;0.000420311212878539!GO:0016251;general RNA polymerase II transcription factor activity;0.000424766511647102!GO:0016741;transferase activity, transferring one-carbon groups;0.000460466406006455!GO:0043623;cellular protein complex assembly;0.000463534912075963!GO:0051187;cofactor catabolic process;0.000479154176950556!GO:0015992;proton transport;0.000484980551291801!GO:0006818;hydrogen transport;0.000515353131597401!GO:0003899;DNA-directed RNA polymerase activity;0.000516074477895881!GO:0003924;GTPase activity;0.000581261070862149!GO:0009117;nucleotide metabolic process;0.000587234247340538!GO:0035257;nuclear hormone receptor binding;0.000637440593214135!GO:0006414;translational elongation;0.000651394692219937!GO:0006611;protein export from nucleus;0.000680839951573686!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000691927575820764!GO:0046489;phosphoinositide biosynthetic process;0.000706575013726121!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000755609300221166!GO:0045892;negative regulation of transcription, DNA-dependent;0.000846088046879905!GO:0006650;glycerophospholipid metabolic process;0.000847319671463883!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00086039296905874!GO:0015630;microtubule cytoskeleton;0.00112155640590788!GO:0000314;organellar small ribosomal subunit;0.0012296118908582!GO:0005763;mitochondrial small ribosomal subunit;0.0012296118908582!GO:0032561;guanyl ribonucleotide binding;0.00136122645591325!GO:0019001;guanyl nucleotide binding;0.00136122645591325!GO:0006383;transcription from RNA polymerase III promoter;0.00137353305913346!GO:0051252;regulation of RNA metabolic process;0.00138672468827422!GO:0015631;tubulin binding;0.00144199601587358!GO:0009889;regulation of biosynthetic process;0.00161465870514057!GO:0008033;tRNA processing;0.00161947913823924!GO:0000139;Golgi membrane;0.00163764325497745!GO:0043681;protein import into mitochondrion;0.00170158388871177!GO:0000279;M phase;0.00172175412573015!GO:0005798;Golgi-associated vesicle;0.001734035957192!GO:0031072;heat shock protein binding;0.00174241575127436!GO:0051090;regulation of transcription factor activity;0.00174270418326315!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00174270418326315!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00174270418326315!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00174270418326315!GO:0022890;inorganic cation transmembrane transporter activity;0.00175030330649306!GO:0046474;glycerophospholipid biosynthetic process;0.0017708805302992!GO:0051087;chaperone binding;0.0017905810193466!GO:0048471;perinuclear region of cytoplasm;0.0018103311836767!GO:0051251;positive regulation of lymphocyte activation;0.00186720400433907!GO:0006302;double-strand break repair;0.00199701566644969!GO:0050790;regulation of catalytic activity;0.00208918362737372!GO:0051789;response to protein stimulus;0.00246035748546072!GO:0006986;response to unfolded protein;0.00246035748546072!GO:0003678;DNA helicase activity;0.00257858454892445!GO:0005741;mitochondrial outer membrane;0.00259848106498649!GO:0004518;nuclease activity;0.00272408987999023!GO:0005684;U2-dependent spliceosome;0.00274765130974426!GO:0019783;small conjugating protein-specific protease activity;0.00278797595061563!GO:0005637;nuclear inner membrane;0.00279263410719807!GO:0005070;SH3/SH2 adaptor activity;0.00292201412981348!GO:0006607;NLS-bearing substrate import into nucleus;0.00295153836267092!GO:0048500;signal recognition particle;0.00297924147987818!GO:0003746;translation elongation factor activity;0.00299215858044224!GO:0006289;nucleotide-excision repair;0.00309771337875502!GO:0019867;outer membrane;0.00312875738712689!GO:0004527;exonuclease activity;0.00312875738712689!GO:0016197;endosome transport;0.0031297591347302!GO:0004843;ubiquitin-specific protease activity;0.00337577805611562!GO:0008047;enzyme activator activity;0.00337577805611562!GO:0008022;protein C-terminus binding;0.00351887530413672!GO:0005657;replication fork;0.0036104045549011!GO:0006405;RNA export from nucleus;0.00389905705661874!GO:0048487;beta-tubulin binding;0.00408509070328725!GO:0044452;nucleolar part;0.00411896511655188!GO:0008312;7S RNA binding;0.00418601985338613!GO:0031968;organelle outer membrane;0.00440006705702996!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00475809590877248!GO:0045047;protein targeting to ER;0.00475809590877248!GO:0000287;magnesium ion binding;0.00490749366474846!GO:0046822;regulation of nucleocytoplasmic transport;0.00505911052504831!GO:0051052;regulation of DNA metabolic process;0.00512199674599665!GO:0009967;positive regulation of signal transduction;0.00521601438492047!GO:0046649;lymphocyte activation;0.00536267242254115!GO:0051539;4 iron, 4 sulfur cluster binding;0.00537324382314356!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00545423497266496!GO:0016272;prefoldin complex;0.00552141919153736!GO:0003711;transcription elongation regulator activity;0.00563306168160852!GO:0006338;chromatin remodeling;0.00573604053594288!GO:0004221;ubiquitin thiolesterase activity;0.00575395134574777!GO:0016790;thiolester hydrolase activity;0.00578272718495809!GO:0042802;identical protein binding;0.00580315309619791!GO:0003684;damaged DNA binding;0.00585467202359806!GO:0007006;mitochondrial membrane organization and biogenesis;0.00597481190964748!GO:0043488;regulation of mRNA stability;0.00604083403181536!GO:0043487;regulation of RNA stability;0.00604083403181536!GO:0050863;regulation of T cell activation;0.00615256070273722!GO:0051249;regulation of lymphocyte activation;0.0062651273848583!GO:0050865;regulation of cell activation;0.00631648224401935!GO:0007050;cell cycle arrest;0.00631777321978587!GO:0005774;vacuolar membrane;0.0063295648196426!GO:0046966;thyroid hormone receptor binding;0.00644929898487603!GO:0050811;GABA receptor binding;0.00647268260221442!GO:0030658;transport vesicle membrane;0.00648622449724051!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00648622449724051!GO:0015002;heme-copper terminal oxidase activity;0.00648622449724051!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00648622449724051!GO:0004129;cytochrome-c oxidase activity;0.00648622449724051!GO:0046467;membrane lipid biosynthetic process;0.0066633179904027!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0068143213313026!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0068143213313026!GO:0016584;nucleosome positioning;0.00701694939635744!GO:0032259;methylation;0.0071819073836534!GO:0005669;transcription factor TFIID complex;0.00733678560751907!GO:0000209;protein polyubiquitination;0.00759901058018374!GO:0048518;positive regulation of biological process;0.00762801589978699!GO:0043414;biopolymer methylation;0.00774878824928614!GO:0051059;NF-kappaB binding;0.00780518593919307!GO:0007264;small GTPase mediated signal transduction;0.00810396743054683!GO:0031625;ubiquitin protein ligase binding;0.00812431563942834!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0081821738267682!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00827206059056685!GO:0001667;ameboidal cell migration;0.00838030799076528!GO:0032027;myosin light chain binding;0.00838030799076528!GO:0050870;positive regulation of T cell activation;0.00846604869443293!GO:0004532;exoribonuclease activity;0.00867614176915383!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00867614176915383!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0087060207699937!GO:0008624;induction of apoptosis by extracellular signals;0.00879001937467627!GO:0031902;late endosome membrane;0.00887704619429036!GO:0043621;protein self-association;0.00919266229259074!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00923597512078869!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00923779640805609!GO:0022415;viral reproductive process;0.00961320289409033!GO:0006839;mitochondrial transport;0.00961436323701956!GO:0030518;steroid hormone receptor signaling pathway;0.00961436323701956!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00962817581497561!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0096510327263379!GO:0043433;negative regulation of transcription factor activity;0.00966564774836826!GO:0006626;protein targeting to mitochondrion;0.010140870124829!GO:0006914;autophagy;0.0103906286889889!GO:0005869;dynactin complex;0.0104695837340751!GO:0006497;protein amino acid lipidation;0.0105776366103078!GO:0030118;clathrin coat;0.0107964725243187!GO:0016859;cis-trans isomerase activity;0.0107964725243187!GO:0051092;activation of NF-kappaB transcription factor;0.0108126471479144!GO:0051329;interphase of mitotic cell cycle;0.0114693425136941!GO:0050852;T cell receptor signaling pathway;0.0115135540393628!GO:0019901;protein kinase binding;0.0117052398260475!GO:0006506;GPI anchor biosynthetic process;0.0117155246377939!GO:0008408;3'-5' exonuclease activity;0.0118850973942593!GO:0005765;lysosomal membrane;0.0118850973942593!GO:0006376;mRNA splice site selection;0.0121682930796186!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0121682930796186!GO:0007265;Ras protein signal transduction;0.0125626437527473!GO:0000049;tRNA binding;0.0126313553140335!GO:0044437;vacuolar part;0.0127202319498133!GO:0030521;androgen receptor signaling pathway;0.0128857962175967!GO:0016853;isomerase activity;0.0132303206192269!GO:0048468;cell development;0.0133013073898862!GO:0051920;peroxiredoxin activity;0.0133340574697051!GO:0051540;metal cluster binding;0.0135284458328482!GO:0051536;iron-sulfur cluster binding;0.0135284458328482!GO:0033116;ER-Golgi intermediate compartment membrane;0.0137755047834778!GO:0008017;microtubule binding;0.0140605847211713!GO:0006505;GPI anchor metabolic process;0.0141613645428128!GO:0030660;Golgi-associated vesicle membrane;0.0142730755431638!GO:0008094;DNA-dependent ATPase activity;0.0143748158023914!GO:0031124;mRNA 3'-end processing;0.0147026379760373!GO:0051325;interphase;0.0147362730179786!GO:0005048;signal sequence binding;0.0147906465767761!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0152797359040865!GO:0008139;nuclear localization sequence binding;0.0154101783749272!GO:0004576;oligosaccharyl transferase activity;0.0154910935037537!GO:0009165;nucleotide biosynthetic process;0.0155465478942095!GO:0051223;regulation of protein transport;0.0155465478942095!GO:0047485;protein N-terminus binding;0.0158614291993184!GO:0007034;vacuolar transport;0.0159031523863192!GO:0015980;energy derivation by oxidation of organic compounds;0.0159328410030701!GO:0000776;kinetochore;0.0161356820765636!GO:0051098;regulation of binding;0.0169261651581648!GO:0000738;DNA catabolic process, exonucleolytic;0.0169261651581648!GO:0016311;dephosphorylation;0.0170532764246837!GO:0043022;ribosome binding;0.0172153794569968!GO:0042101;T cell receptor complex;0.0175629291552734!GO:0003725;double-stranded RNA binding;0.0177211791284556!GO:0009116;nucleoside metabolic process;0.0178165973919024!GO:0008276;protein methyltransferase activity;0.0178350368529707!GO:0008250;oligosaccharyl transferase complex;0.0178813815433703!GO:0000082;G1/S transition of mitotic cell cycle;0.0184379499314129!GO:0045454;cell redox homeostasis;0.0184379499314129!GO:0016788;hydrolase activity, acting on ester bonds;0.0191660520608312!GO:0045603;positive regulation of endothelial cell differentiation;0.0193281528149932!GO:0032981;mitochondrial respiratory chain complex I assembly;0.019488656282223!GO:0010257;NADH dehydrogenase complex assembly;0.019488656282223!GO:0033108;mitochondrial respiratory chain complex assembly;0.019488656282223!GO:0051235;maintenance of localization;0.0198189600264273!GO:0008637;apoptotic mitochondrial changes;0.0198447076814584!GO:0006284;base-excision repair;0.0200535985567311!GO:0019955;cytokine binding;0.0203540691415089!GO:0006672;ceramide metabolic process;0.0210976171244666!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0215891672008673!GO:0030833;regulation of actin filament polymerization;0.0217322173111568!GO:0019900;kinase binding;0.0224725569733729!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0229803669566631!GO:0030522;intracellular receptor-mediated signaling pathway;0.0232630751476961!GO:0000178;exosome (RNase complex);0.0232989445642648!GO:0016791;phosphoric monoester hydrolase activity;0.0235931925150587!GO:0005819;spindle;0.0236299207365406!GO:0006595;polyamine metabolic process;0.0241179492341701!GO:0003682;chromatin binding;0.0241179492341701!GO:0051336;regulation of hydrolase activity;0.0241390323912739!GO:0005521;lamin binding;0.0241390323912739!GO:0008287;protein serine/threonine phosphatase complex;0.0241390323912739!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0257085072471307!GO:0031123;RNA 3'-end processing;0.0258539125123088!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0262217958049193!GO:0031252;leading edge;0.0263868912705869!GO:0040029;regulation of gene expression, epigenetic;0.0266509966310292!GO:0006091;generation of precursor metabolites and energy;0.0270588170044981!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0273320303648154!GO:0031647;regulation of protein stability;0.0281108481007072!GO:0042158;lipoprotein biosynthetic process;0.0281108498976953!GO:0000075;cell cycle checkpoint;0.0281969328913595!GO:0016301;kinase activity;0.0281970608078871!GO:0015923;mannosidase activity;0.0285750766520603!GO:0031982;vesicle;0.0287281065834304!GO:0030880;RNA polymerase complex;0.0288303399205403!GO:0019210;kinase inhibitor activity;0.02909787683848!GO:0005095;GTPase inhibitor activity;0.0292122190334463!GO:0030137;COPI-coated vesicle;0.0292226060699155!GO:0008097;5S rRNA binding;0.0299844836677744!GO:0033549;MAP kinase phosphatase activity;0.0308276138440452!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0308276138440452!GO:0008320;protein transmembrane transporter activity;0.0310252099900243!GO:0032508;DNA duplex unwinding;0.0314521359021667!GO:0032392;DNA geometric change;0.0314521359021667!GO:0030125;clathrin vesicle coat;0.0314521359021667!GO:0030665;clathrin coated vesicle membrane;0.0314521359021667!GO:0000090;mitotic anaphase;0.0325203320867831!GO:0051322;anaphase;0.0325203320867831!GO:0016605;PML body;0.0331302012917859!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0334211092241878!GO:0007021;tubulin folding;0.033514645485275!GO:0044438;microbody part;0.033789934925025!GO:0044439;peroxisomal part;0.033789934925025!GO:0030695;GTPase regulator activity;0.0338539095405368!GO:0004197;cysteine-type endopeptidase activity;0.0338937059627013!GO:0004003;ATP-dependent DNA helicase activity;0.0340616785367447!GO:0005832;chaperonin-containing T-complex;0.0346940114791961!GO:0004722;protein serine/threonine phosphatase activity;0.0349012187352469!GO:0008180;signalosome;0.0361116535121998!GO:0042608;T cell receptor binding;0.0361849184203866!GO:0019976;interleukin-2 binding;0.0367383097567915!GO:0004911;interleukin-2 receptor activity;0.0367383097567915!GO:0032200;telomere organization and biogenesis;0.0369543867207131!GO:0000723;telomere maintenance;0.0369543867207131!GO:0006144;purine base metabolic process;0.0370428368934896!GO:0000119;mediator complex;0.0375250517949122!GO:0000303;response to superoxide;0.0377512441159342!GO:0004721;phosphoprotein phosphatase activity;0.0377512441159342!GO:0017091;AU-rich element binding;0.0380476105672191!GO:0050779;RNA destabilization;0.0380476105672191!GO:0000289;poly(A) tail shortening;0.0380476105672191!GO:0030663;COPI coated vesicle membrane;0.0380984192508!GO:0030126;COPI vesicle coat;0.0380984192508!GO:0019904;protein domain specific binding;0.0380984192508!GO:0004659;prenyltransferase activity;0.0381343945099893!GO:0002820;negative regulation of adaptive immune response;0.0384531659617027!GO:0002823;negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0384531659617027!GO:0043281;regulation of caspase activity;0.0387099468981162!GO:0001772;immunological synapse;0.0388303713221474!GO:0004860;protein kinase inhibitor activity;0.0389339081528608!GO:0046426;negative regulation of JAK-STAT cascade;0.0390008182081954!GO:0031988;membrane-bound vesicle;0.0390457714237156!GO:0000175;3'-5'-exoribonuclease activity;0.0390797874631197!GO:0000096;sulfur amino acid metabolic process;0.0391890551719996!GO:0006354;RNA elongation;0.039290905185331!GO:0022411;cellular component disassembly;0.039290905185331!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0394404668245314!GO:0008538;proteasome activator activity;0.040115482685651!GO:0045321;leukocyte activation;0.0401266100561078!GO:0022884;macromolecule transmembrane transporter activity;0.0401698696963377!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0401698696963377!GO:0046519;sphingoid metabolic process;0.0405141984320138!GO:0006007;glucose catabolic process;0.0410803525733664!GO:0022406;membrane docking;0.0412912463082688!GO:0048278;vesicle docking;0.0412912463082688!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0416842997987901!GO:0032940;secretion by cell;0.0423002185892145!GO:0018196;peptidyl-asparagine modification;0.0423002185892145!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0423002185892145!GO:0051287;NAD binding;0.0423079778021491!GO:0007004;telomere maintenance via telomerase;0.042811107378171!GO:0008138;protein tyrosine/serine/threonine phosphatase activity;0.0429723531739051!GO:0006904;vesicle docking during exocytosis;0.0431785477931978!GO:0033367;protein localization in mast cell secretory granule;0.0431785477931978!GO:0033365;protein localization in organelle;0.0431785477931978!GO:0033371;T cell secretory granule organization and biogenesis;0.0431785477931978!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0431785477931978!GO:0033375;protease localization in T cell secretory granule;0.0431785477931978!GO:0042629;mast cell granule;0.0431785477931978!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0431785477931978!GO:0033364;mast cell secretory granule organization and biogenesis;0.0431785477931978!GO:0033380;granzyme B localization in T cell secretory granule;0.0431785477931978!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0431785477931978!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0431785477931978!GO:0033368;protease localization in mast cell secretory granule;0.0431785477931978!GO:0033366;protein localization in secretory granule;0.0431785477931978!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0431785477931978!GO:0033374;protein localization in T cell secretory granule;0.0431785477931978!GO:0030867;rough endoplasmic reticulum membrane;0.0431785477931978!GO:0006470;protein amino acid dephosphorylation;0.0433072900579134!GO:0016585;chromatin remodeling complex;0.043793364322192!GO:0009112;nucleobase metabolic process;0.0441254791445456!GO:0046979;TAP2 binding;0.0443180613020467!GO:0046977;TAP binding;0.0443180613020467!GO:0046978;TAP1 binding;0.0443180613020467!GO:0030258;lipid modification;0.0452389579905712!GO:0031901;early endosome membrane;0.0454125427349839!GO:0000152;nuclear ubiquitin ligase complex;0.0455863898573717!GO:0004177;aminopeptidase activity;0.0458441750841615!GO:0030127;COPII vesicle coat;0.0460059987751436!GO:0012507;ER to Golgi transport vesicle membrane;0.0460059987751436!GO:0006919;caspase activation;0.046248036151425!GO:0031903;microbody membrane;0.0472093257121118!GO:0005778;peroxisomal membrane;0.0472093257121118!GO:0030041;actin filament polymerization;0.0476693572785446!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0477374984003263!GO:0000428;DNA-directed RNA polymerase complex;0.0477374984003263!GO:0042393;histone binding;0.0484729937358576!GO:0035258;steroid hormone receptor binding;0.0493434251123289!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0494346750933566!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0495612148464385!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0495612148464385!GO:0005096;GTPase activator activity;0.049668850261121
|sample_id=11782
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=PAX3,7:3.4766607184;FOX{F1,F2,J1}:2.83312758391;RUNX1..3:2.61305154757;CREB1:2.55399074845;FOX{D1,D2}:2.54837058105;ATF5_CREB3:2.53867265692;TLX2:2.41683647031;ELF1,2,4:2.41084125305;BPTF:2.29972049305;CDX1,2,4:2.25309914224;ATF4:2.22124040993;DMAP1_NCOR{1,2}_SMARC:2.15744557659;RORA:1.93810804791;PDX1:1.85899916877;HMX1:1.81104852476;FOXO1,3,4:1.79074888729;ETS1,2:1.72978690634;ZBTB16:1.72528973738;PAX4:1.72302139531;FOX{I1,J2}:1.57105747101;PAX2:1.3606690767;SPI1:1.3058164635;FOXN1:1.2682476841;JUN:1.26415772106;RFX2..5_RFXANK_RFXAP:1.13885318223;ELK1,4_GABP{A,B1}:1.07452195083;FOXP1:1.05442202169;PBX1:1.04953425923;IRF1,2:1.0096873943;HIF1A:0.982716444212;ATF6:0.981218145905;SPIB:0.899990366683;ATF2:0.876486688912;TGIF1:0.841838319346;GATA6:0.829192345314;IKZF2:0.791669807097;NKX3-1:0.751839279005;POU1F1:0.747786974266;NANOG{mouse}:0.744122814607;T:0.730374157595;NKX2-2,8:0.626121969112;NKX6-1,2:0.62423928482;NFIL3:0.620101856787;PAX6:0.618978331769;BREu{core}:0.607075080682;MYOD1:0.589639628429;CUX2:0.561916567327;SOX2:0.546110425644;PITX1..3:0.543810688369;ZEB1:0.536084358141;STAT1,3:0.513426608743;LEF1_TCF7_TCF7L1,2:0.49952646964;NKX2-1,4:0.488090962347;SNAI1..3:0.466599646363;ALX1:0.45310599679;YY1:0.427690056289;NFKB1_REL_RELA:0.4254039672;FOXQ1:0.391945494028;IRF7:0.353335052376;NFATC1..3:0.333815967437;RFX1:0.296636860759;MAFB:0.265005890858;POU2F1..3:0.216949632188;SPZ1:0.181407421422;SREBF1,2:0.146327076982;EP300:0.140582578959;HES1:0.109576310725;HAND1,2:0.0908933579866;AIRE:0.0827329394155;MYB:0.069845221483;AHR_ARNT_ARNT2:0.0597133726338;LMO2:0.0467484255918;HOX{A6,A7,B6,B7}:0.0448031233903;NFIX:0.0435720571543;CRX:-0.0103745762603;SOX5:-0.0962277898652;EVI1:-0.102927360605;NR5A1,2:-0.11515019797;OCT4_SOX2{dimer}:-0.122793950387;E2F1..5:-0.135939130637;TAL1_TCF{3,4,12}:-0.162136209081;STAT2,4,6:-0.17903635788;NFE2L1:-0.188896667803;NANOG:-0.192619887305;NFY{A,B,C}:-0.202255289425;ZNF384:-0.21675812219;NRF1:-0.228394104133;STAT5{A,B}:-0.274287084741;FOXA2:-0.277171433575;HOXA9_MEIS1:-0.296379409572;DBP:-0.300048954945;TBX4,5:-0.339862226124;GFI1:-0.347167566971;CEBPA,B_DDIT3:-0.358523096925;FOS_FOS{B,L1}_JUN{B,D}:-0.374890083937;HBP1_HMGB_SSRP1_UBTF:-0.379133527451;VSX1,2:-0.382588263971;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.384080621511;HLF:-0.391843490759;NHLH1,2:-0.403036044478;FOSL2:-0.409616273902;AR:-0.440034727424;HNF4A_NR2F1,2:-0.459738683815;TOPORS:-0.464725125556;BACH2:-0.473300812221;NFE2:-0.511051805924;PRRX1,2:-0.512435970738;HNF1A:-0.537168047504;FOXM1:-0.549560923581;ZNF143:-0.603488346553;HMGA1,2:-0.604568689456;MYFfamily:-0.605886705069;ONECUT1,2:-0.610838344875;ALX4:-0.612260601383;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.616150889801;FOXP3:-0.645734922461;SRF:-0.652805953168;GFI1B:-0.656846574952;SMAD1..7,9:-0.665966504129;POU3F1..4:-0.671851760017;bHLH_family:-0.759764350565;ARID5B:-0.764697973541;ZNF423:-0.79311856669;SOX{8,9,10}:-0.803980425512;PAX8:-0.811675803136;ZNF148:-0.817424551422;EGR1..3:-0.833191477348;ADNP_IRX_SIX_ZHX:-0.85561993714;MED-1{core}:-0.857527141396;GLI1..3:-0.866237849048;NFE2L2:-0.867291601358;HOX{A5,B5}:-0.892223531081;MEF2{A,B,C,D}:-0.928725965694;FOXD3:-0.943523320232;MTF1:-0.952524030075;NR6A1:-0.98109113547;RBPJ:-1.01890748731;FOXL1:-1.02097580479;MYBL2:-1.05260781923;LHX3,4:-1.06353942058;PAX5:-1.0757613098;REST:-1.07680291102;NKX2-3_NKX2-5:-1.07758843614;RREB1:-1.08462790703;GCM1,2:-1.08494006202;UFEwm:-1.09520582442;CDC5L:-1.10978097088;ZFP161:-1.11748849389;TFDP1:-1.15708587949;ESRRA:-1.18683288925;PPARG:-1.21905435471;SOX17:-1.24467650874;ZBTB6:-1.28198540282;TFCP2:-1.31154274981;POU6F1:-1.32112674543;ZNF238:-1.32548706464;TBP:-1.33709084897;MZF1:-1.36202616758;TP53:-1.36309264895;RXRA_VDR{dimer}:-1.36422444023;NR1H4:-1.37364659082;MTE{core}:-1.38263974712;GATA4:-1.38335050762;TFAP4:-1.41157364265;TEF:-1.41540403597;POU5F1:-1.41592364616;PATZ1:-1.46326102822;PRDM1:-1.47098402914;HOX{A4,D4}:-1.48862882139;ZIC1..3:-1.48894447331;TFAP2{A,C}:-1.532819822;MAZ:-1.57510789743;XCPE1{core}:-1.58101125452;TEAD1:-1.60217794259;GTF2I:-1.65069774242;NR3C1:-1.65658307069;HIC1:-1.67347441925;ESR1:-1.70758892982;TFAP2B:-1.72074626613;SP1:-1.7368497134;TLX1..3_NFIC{dimer}:-1.74249591328;XBP1:-1.74916318064;HSF1,2:-1.79140077315;EN1,2:-1.82007266684;GTF2A1,2:-1.97536682258;KLF4:-2.09451443182;RXR{A,B,G}:-2.14810505466;GZF1:-2.15148576487;NKX3-2:-2.22292656785;EBF1:-2.27012512425;PAX1,9:-2.36430398117;IKZF1:-2.79333258511
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11782-124A9;search_select_hide=table117:FF:11782-124A9
}}
}}

Latest revision as of 18:19, 4 June 2020

Name:CD4+CD25+CD45RA- memory regulatory T cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13195
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age25
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005031
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13195 CAGE DRX008184 DRR009056
Accession ID Hg19

Library idBAMCTSS
CNhs13195 DRZ000481 DRZ001866
Accession ID Hg38

Library idBAMCTSS
CNhs13195 DRZ011831 DRZ013216
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils1.086
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.116
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.177
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.275
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.393
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0.275
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.201
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.338
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.71
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.382
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.796
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.247
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.201
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.442
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.684
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.486
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.114
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.497
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.614
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.303
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.715
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.112
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.854
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.757
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.562
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.485
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.573
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.809
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.12
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.857
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.269
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.112
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.112
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13195

Jaspar motifP-value
MA0002.21.11912e-5
MA0003.10.729
MA0004.10.871
MA0006.10.205
MA0007.10.958
MA0009.10.0913
MA0014.10.863
MA0017.10.734
MA0018.21.12636e-7
MA0019.10.936
MA0024.10.558
MA0025.10.465
MA0027.10.751
MA0028.12.2847e-4
MA0029.10.158
MA0030.10.0551
MA0031.10.00221
MA0035.20.101
MA0038.10.103
MA0039.20.998
MA0040.10.84
MA0041.10.291
MA0042.10.878
MA0043.10.0249
MA0046.10.214
MA0047.20.217
MA0048.10.859
MA0050.11.13924e-6
MA0051.10.0186
MA0052.10.00169
MA0055.10.931
MA0057.10.58
MA0058.10.783
MA0059.10.672
MA0060.10.225
MA0061.10.0114
MA0062.29.03569e-14
MA0065.20.203
MA0066.10.191
MA0067.10.01
MA0068.10.864
MA0069.10.66
MA0070.10.468
MA0071.10.683
MA0072.10.122
MA0073.10.94
MA0074.10.32
MA0076.16.12756e-6
MA0077.10.0404
MA0078.10.673
MA0079.20.255
MA0080.26.021e-11
MA0081.10.0228
MA0083.10.095
MA0084.10.34
MA0087.10.533
MA0088.10.395
MA0090.19.94479e-5
MA0091.10.684
MA0092.10.979
MA0093.10.985
MA0099.20.0058
MA0100.10.716
MA0101.10.735
MA0102.20.456
MA0103.10.177
MA0104.20.203
MA0105.12.33971e-6
MA0106.10.157
MA0107.10.939
MA0108.29.26537e-8
MA0111.10.186
MA0112.20.359
MA0113.10.663
MA0114.10.793
MA0115.10.559
MA0116.12.03247e-4
MA0117.10.0859
MA0119.10.699
MA0122.10.645
MA0124.10.284
MA0125.10.16
MA0131.10.106
MA0135.10.257
MA0136.14.47701e-23
MA0137.20.751
MA0138.20.274
MA0139.10.0554
MA0140.10.106
MA0141.10.678
MA0142.10.204
MA0143.10.26
MA0144.10.805
MA0145.10.233
MA0146.10.655
MA0147.10.175
MA0148.10.449
MA0149.10.0704
MA0150.10.768
MA0152.10.00803
MA0153.10.123
MA0154.10.0651
MA0155.10.359
MA0156.12.4451e-16
MA0157.19.66724e-4
MA0159.10.292
MA0160.10.795
MA0162.10.943
MA0163.11.33366e-7
MA0164.10.496
MA0258.10.367
MA0259.10.259



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13195

Novel motifP-value
10.305
100.00816
1000.502
1010.215
1020.732
1030.689
1040.924
1050.252
1060.38
1070.0201
1080.923
1090.114
110.174
1100.811
1110.531
1120.598
1130.345
1140.288
1150.39
1160.402
1170.00386
1180.315
1190.853
120.754
1200.922
1210.655
1220.57
1232.3267e-4
1240.319
1250.676
1260.527
1270.821
1280.966
1290.909
130.367
1300.23
1310.973
1320.287
1330.984
1340.925
1350.981
1360.884
1370.0498
1380.33
1390.0833
140.503
1400.0501
1410.504
1420.236
1430.00179
1440.995
1450.683
1460.8
1470.0412
1480.0971
1490.558
150.11
1500.753
1510.528
1520.543
1530.631
1540.464
1550.0175
1560.552
1570.181
1580.0275
1590.242
160.723
1600.523
1610.805
1620.0688
1630.553
1640.0462
1650.573
1660.355
1670.101
1680.914
1690.751
170.893
180.846
190.231
20.465
200.372
210.676
220.536
230.605
240.674
250.0775
260.299
270.649
280.578
290.00613
30.177
300.0906
310.869
320.146
330.168
340.344
350.217
360.0212
370.171
380.97
390.329
40.843
400.425
410.148
420.115
430.378
440.719
450.283
460.312
470.133
480.26
490.123
50.386
500.415
510.724
520.474
530.469
540.931
550.936
560.911
570.481
580.104
590.894
60.993
600.441
610.122
620.122
630.895
640.442
650.885
660.702
670.997
680.888
690.862
70.293
700.0598
710.0272
720.0522
730.48
740.891
750.0144
760.0912
770.0426
780.12
790.576
80.866
800.0579
810.342
820.0892
830.826
840.383
850.986
860.154
870.876
880.918
890.121
90.815
900.0163
910.633
920.365
930.995
940.176
950.0296
960.277
970.306
980.11
992.53403e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13195


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000815 (regulatory T cell)
0000898 (naive T cell)
0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell)
0002677 (naive regulatory T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

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