FFCP PHASE1:Hg19::chr11:66790617..66790635,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91683 | |EntrezGene=91683 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18381 | |HGNC=18381 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV01,Q8NDM9 | |UniProt=Q8IV01,Q8NDM9 | ||
|association_with_transcript=-180bp_to_ENST00000527043,NM_177963_5end | |association_with_transcript=-180bp_to_ENST00000527043,NM_177963_5end | ||
|cluster_id=chr11:66790617..66790635,+ | |||
|description=CAGE_peak_3_at_SYT12_5end | |description=CAGE_peak_3_at_SYT12_5end | ||
|id=chr11:66790617..66790635,+ | |id=chr11:66790617..66790635,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.86e-11;29 | |||
|ontology_enrichment_disease=DOID:5093!3.39e-07!4;DOID:1612!3.39e-07!4 | |ontology_enrichment_disease=DOID:5093!3.39e-07!4;DOID:1612!3.39e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:5093;6.44e-19;4!DOID:1612;6.44e-19;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,5.78e-19,4;DOID:1612,5.78e-19,4;DOID:305,6.04e-14,106;DOID:0050687,4.38e-09,143;DOID:7,1.01e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.74e-25!57;UBERON:0005068!3.74e-25!57;UBERON:0006241!3.74e-25!57;UBERON:0007135!3.74e-25!57;UBERON:0002616!1.53e-22!59;UBERON:0002780!2.09e-20!41;UBERON:0001890!2.09e-20!41;UBERON:0006240!2.09e-20!41;UBERON:0003075!3.73e-20!86;UBERON:0007284!3.73e-20!86;UBERON:0000955!9.64e-20!69;UBERON:0006238!9.64e-20!69;UBERON:0002346!1.05e-19!90;UBERON:0003080!1.06e-19!42;UBERON:0001017!1.15e-19!82;UBERON:0005743!3.84e-19!86;UBERON:0001869!1.74e-17!32;UBERON:0001893!2.14e-17!34;UBERON:0002020!2.40e-17!34;UBERON:0003528!2.40e-17!34;UBERON:0003056!5.22e-17!61;UBERON:0000033!1.36e-16!123;UBERON:0000956!2.64e-16!25;UBERON:0000203!2.64e-16!25;UBERON:0002791!2.70e-16!33;UBERON:0007023!3.92e-16!115;UBERON:0000073!4.91e-16!94;UBERON:0001016!4.91e-16!94;UBERON:0000153!7.82e-16!129;UBERON:0007811!7.82e-16!129;UBERON:0002619!8.99e-16!22;UBERON:0001737!3.55e-14!9;UBERON:0001950!1.32e-13!20;UBERON:0004121!1.72e-12!169;UBERON:0000924!1.83e-12!173;UBERON:0006601!1.83e-12!173;UBERON:0000477!1.24e-10!286;UBERON:0000481!2.14e-09!347;UBERON:0000475!1.66e-08!365;UBERON:0000200!2.50e-08!6;UBERON:0000064!1.02e-07!219;UBERON:0000468!1.37e-07!659;UBERON:0000923!4.32e-07!604;UBERON:0005291!4.32e-07!604;UBERON:0006598!4.32e-07!604;UBERON:0002532!4.32e-07!604;UBERON:0002050!5.02e-07!605;UBERON:0005423!5.02e-07!605;UBERON:0001557!9.20e-07!19;UBERON:0000062!9.98e-07!511 | |ontology_enrichment_uberon=UBERON:0001049!3.74e-25!57;UBERON:0005068!3.74e-25!57;UBERON:0006241!3.74e-25!57;UBERON:0007135!3.74e-25!57;UBERON:0002616!1.53e-22!59;UBERON:0002780!2.09e-20!41;UBERON:0001890!2.09e-20!41;UBERON:0006240!2.09e-20!41;UBERON:0003075!3.73e-20!86;UBERON:0007284!3.73e-20!86;UBERON:0000955!9.64e-20!69;UBERON:0006238!9.64e-20!69;UBERON:0002346!1.05e-19!90;UBERON:0003080!1.06e-19!42;UBERON:0001017!1.15e-19!82;UBERON:0005743!3.84e-19!86;UBERON:0001869!1.74e-17!32;UBERON:0001893!2.14e-17!34;UBERON:0002020!2.40e-17!34;UBERON:0003528!2.40e-17!34;UBERON:0003056!5.22e-17!61;UBERON:0000033!1.36e-16!123;UBERON:0000956!2.64e-16!25;UBERON:0000203!2.64e-16!25;UBERON:0002791!2.70e-16!33;UBERON:0007023!3.92e-16!115;UBERON:0000073!4.91e-16!94;UBERON:0001016!4.91e-16!94;UBERON:0000153!7.82e-16!129;UBERON:0007811!7.82e-16!129;UBERON:0002619!8.99e-16!22;UBERON:0001737!3.55e-14!9;UBERON:0001950!1.32e-13!20;UBERON:0004121!1.72e-12!169;UBERON:0000924!1.83e-12!173;UBERON:0006601!1.83e-12!173;UBERON:0000477!1.24e-10!286;UBERON:0000481!2.14e-09!347;UBERON:0000475!1.66e-08!365;UBERON:0000200!2.50e-08!6;UBERON:0000064!1.02e-07!219;UBERON:0000468!1.37e-07!659;UBERON:0000923!4.32e-07!604;UBERON:0005291!4.32e-07!604;UBERON:0006598!4.32e-07!604;UBERON:0002532!4.32e-07!604;UBERON:0002050!5.02e-07!605;UBERON:0005423!5.02e-07!605;UBERON:0001557!9.20e-07!19;UBERON:0000062!9.98e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.12e-40;9!UBERON:0001557;1.12e-40;9!UBERON:0002619;1.37e-13;22!UBERON:0000956;7.67e-12;25!UBERON:0000203;7.67e-12;25!UBERON:0001950;8.34e-12;20!UBERON:0001869;6.31e-10;32!UBERON:0001893;1.68e-09;34!UBERON:0000065;1.57e-08;44!UBERON:0002021;2.22e-08;5!UBERON:0000072;2.77e-08;37!UBERON:0002791;2.77e-08;32!UBERON:0002780;4.35e-08;41!UBERON:0001890;4.35e-08;41!UBERON:0000310;1.35e-07;10!UBERON:0003528;4.18e-07;34!UBERON:0002020;4.18e-07;34!UBERON:0001443;6.62e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.34e-40,9;UBERON:0001557,9.29e-23,19;UBERON:0002619,9.22e-14,22;UBERON:0000956,5.43e-12,25;UBERON:0000203,5.43e-12,25;UBERON:0001950,5.77e-12,20;UBERON:0011216,1.15e-11,223;UBERON:0001869,2.60e-11,32;UBERON:0001893,1.47e-10,34;UBERON:0002780,2.66e-10,41;UBERON:0001890,2.66e-10,41;UBERON:0003080,2.66e-10,41;UBERON:0006240,2.66e-10,41;UBERON:0001041,1.33e-09,87;UBERON:0002791,4.06e-09,32;UBERON:0000073,4.92e-09,53;UBERON:0002616,4.92e-09,53;UBERON:0002021,1.55e-08,5;UBERON:0003528,1.65e-08,34;UBERON:0002020,1.65e-08,34;UBERON:0001049,1.96e-08,56;UBERON:0005068,1.96e-08,56;UBERON:0006241,1.96e-08,56;UBERON:0007135,1.96e-08,56;UBERON:0008947,2.45e-08,38;UBERON:0003258,2.45e-08,38;UBERON:0000065,4.06e-08,54;UBERON:0004921,5.02e-08,118;UBERON:0000072,5.14e-08,47;UBERON:0000955,1.03e-07,68;UBERON:0006238,1.03e-07,68;UBERON:0000310,1.29e-07,10;UBERON:0001004,1.38e-07,74;UBERON:0001443,6.38e-07,11 | |||
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| ||
|short_description=p3@SYT12 | |short_description=p3@SYT12 | ||
}} | }} |
Latest revision as of 16:32, 19 September 2015
Short description: | p3@SYT12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SYT12_5end |
Coexpression cluster: | NA |
Association with transcript: | -180bp_to_ENST00000527043, NM_177963_5end |
EntrezGene: | SYT12 |
HGNC: | 18381 |
UniProt: | Q8IV01Q8NDM9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 1.34e-40 | 9 |
upper respiratory tract | 9.29e-23 | 19 |
regional part of cerebral cortex | 9.22e-14 | 22 |
cerebral cortex | 5.43e-12 | 25 |
pallium | 5.43e-12 | 25 |
neocortex | 5.77e-12 | 20 |
organ system subdivision | 1.15e-11 | 223 |
cerebral hemisphere | 2.60e-11 | 32 |
telencephalon | 1.47e-10 | 34 |
regional part of forebrain | 2.66e-10 | 41 |
forebrain | 2.66e-10 | 41 |
anterior neural tube | 2.66e-10 | 41 |
future forebrain | 2.66e-10 | 41 |
foregut | 1.33e-09 | 87 |
regional part of telencephalon | 4.06e-09 | 32 |
regional part of nervous system | 4.92e-09 | 53 |
regional part of brain | 4.92e-09 | 53 |
occipital lobe | 1.55e-08 | 5 |
brain grey matter | 1.65e-08 | 34 |
gray matter | 1.65e-08 | 34 |
neural tube | 1.96e-08 | 56 |
neural rod | 1.96e-08 | 56 |
future spinal cord | 1.96e-08 | 56 |
neural keel | 1.96e-08 | 56 |
respiratory primordium | 2.45e-08 | 38 |
endoderm of foregut | 2.45e-08 | 38 |
respiratory tract | 4.06e-08 | 54 |
subdivision of digestive tract | 5.02e-08 | 118 |
segment of respiratory tract | 5.14e-08 | 47 |
brain | 1.03e-07 | 68 |
future brain | 1.03e-07 | 68 |
breast | 1.29e-07 | 10 |
respiratory system | 1.38e-07 | 74 |
chest | 6.38e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 5.78e-19 | 4 |
breast cancer | 5.78e-19 | 4 |
carcinoma | 6.04e-14 | 106 |
cell type cancer | 4.38e-09 | 143 |
disease of anatomical entity | 1.01e-07 | 39 |