FFCP PHASE1:Hg19::chr10:46168156..46168246,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:46168156..46168246,-
|short_description=p1@ZFAND4
|description=CAGE_peak_1_at_ZFAND4_5end
|association_with_transcript=0bp_to_ENST00000335258,ENST00000374...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=93550 | |EntrezGene=93550 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23504 | |HGNC=23504 | ||
|UniProt=Q5VVY2, | |TSSclassifier=strong | ||
|UniProt=Q5VVY2,Q5VVY4,F2Z2H4 | |||
|association_with_transcript=0bp_to_ENST00000335258,ENST00000374371,ENST00000374376,ENST00000465407,ENST00000497028_5end | |||
|cluster_id=chr10:46168156..46168246,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_ZFAND4_5end | |||
|id=chr10:46168156..46168246,- | |||
|ontology_enrichment_celltype=CL:0000838!3.34e-13!52;CL:0000738!1.85e-12!140;CL:0000542!2.72e-12!53;CL:0000051!2.72e-12!53;CL:0002031!1.64e-10!124;CL:0000791!7.82e-10!18;CL:0000789!7.82e-10!18;CL:0002420!7.82e-10!18;CL:0002419!7.82e-10!18;CL:0000790!7.82e-10!18;CL:0002087!6.87e-09!119;CL:0000084!1.70e-08!25;CL:0000827!1.70e-08!25;CL:0000037!1.17e-07!172;CL:0000566!1.17e-07!172;CL:0000625!1.47e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.08e-10;18!CL:0000789;6.08e-10;18!CL:0002419;6.08e-10;18!CL:0000084;1.70e-08;25!CL:0000542;7.31e-08;53!CL:0000625;1.33e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.08e-13,136;CL:0000838,3.19e-13,52;CL:0000542,2.66e-12,53;CL:0000051,2.66e-12,53;CL:0002031,1.06e-11,120;CL:0002087,5.71e-10,115;CL:0000791,7.79e-10,18;CL:0000789,7.79e-10,18;CL:0002420,7.79e-10,18;CL:0002419,7.79e-10,18;CL:0000790,7.79e-10,18;CL:0000084,1.72e-08,25;CL:0000827,1.72e-08,25;CL:0000037,1.95e-08,168;CL:0000625,1.47e-07,11;CL:0000988,3.01e-07,177;CL:0002032,3.76e-07,161;CL:0000837,3.76e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;6.08e-10;18!CL:0000051;7.31e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.08e-31!115;UBERON:0001049!4.19e-14!57;UBERON:0005068!4.19e-14!57;UBERON:0006241!4.19e-14!57;UBERON:0007135!4.19e-14!57;UBERON:0000073!8.55e-14!94;UBERON:0001016!8.55e-14!94;UBERON:0002616!8.92e-13!59;UBERON:0005743!1.27e-12!86;UBERON:0001017!3.36e-12!82;UBERON:0002346!3.00e-10!90;UBERON:0002780!4.22e-10!41;UBERON:0001890!4.22e-10!41;UBERON:0006240!4.22e-10!41;UBERON:0003080!5.49e-10!42;UBERON:0003075!5.85e-10!86;UBERON:0007284!5.85e-10!86;UBERON:0000955!6.29e-10!69;UBERON:0006238!6.29e-10!69;UBERON:0002020!1.67e-07!34;UBERON:0003528!1.67e-07!34;UBERON:0001893!2.58e-07!34;UBERON:0002791!3.96e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;3.26e-09;114!UBERON:0000073;4.01e-08;53!UBERON:0002616;4.01e-08;53!UBERON:0002780;9.28e-08;41!UBERON:0001890;9.28e-08;41!UBERON:0000178;8.29e-07;15!UBERON:0000179;8.29e-07;15!UBERON:0000463;8.29e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.30e-31,114;UBERON:0001049,3.13e-14,56;UBERON:0005068,3.13e-14,56;UBERON:0006241,3.13e-14,56;UBERON:0007135,3.13e-14,56;UBERON:0001016,2.19e-13,89;UBERON:0000073,5.84e-13,53;UBERON:0002616,5.84e-13,53;UBERON:0001017,3.16e-12,81;UBERON:0002346,1.41e-10,86;UBERON:0003075,2.71e-10,82;UBERON:0007284,2.71e-10,82;UBERON:0002780,4.21e-10,41;UBERON:0001890,4.21e-10,41;UBERON:0003080,4.21e-10,41;UBERON:0006240,4.21e-10,41;UBERON:0000955,5.96e-10,68;UBERON:0006238,5.96e-10,68;UBERON:0003528,1.67e-07,34;UBERON:0002020,1.67e-07,34;UBERON:0001893,2.58e-07,34 | |||
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| ||
|short_description=p1@ZFAND4 | |||
}} | }} |
Latest revision as of 07:39, 18 September 2015
Short description: | p1@ZFAND4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZFAND4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000335258, ENST00000374371, ENST00000374376, ENST00000465407, ENST00000497028_5end |
EntrezGene: | ZFAND4 |
HGNC: | 23504 |
UniProt: | Q5VVY2Q5VVY4F2Z2H4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.08e-13 | 136 |
lymphoid lineage restricted progenitor cell | 3.19e-13 | 52 |
lymphocyte | 2.66e-12 | 53 |
common lymphoid progenitor | 2.66e-12 | 53 |
hematopoietic lineage restricted progenitor cell | 1.06e-11 | 120 |
nongranular leukocyte | 5.71e-10 | 115 |
mature alpha-beta T cell | 7.79e-10 | 18 |
alpha-beta T cell | 7.79e-10 | 18 |
immature T cell | 7.79e-10 | 18 |
mature T cell | 7.79e-10 | 18 |
immature alpha-beta T cell | 7.79e-10 | 18 |
T cell | 1.72e-08 | 25 |
pro-T cell | 1.72e-08 | 25 |
hematopoietic stem cell | 1.95e-08 | 168 |
CD8-positive, alpha-beta T cell | 1.47e-07 | 11 |
hematopoietic cell | 3.01e-07 | 177 |
hematopoietic oligopotent progenitor cell | 3.76e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.76e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.30e-31 | 114 |
neural tube | 3.13e-14 | 56 |
neural rod | 3.13e-14 | 56 |
future spinal cord | 3.13e-14 | 56 |
neural keel | 3.13e-14 | 56 |
nervous system | 2.19e-13 | 89 |
regional part of nervous system | 5.84e-13 | 53 |
regional part of brain | 5.84e-13 | 53 |
central nervous system | 3.16e-12 | 81 |
neurectoderm | 1.41e-10 | 86 |
neural plate | 2.71e-10 | 82 |
presumptive neural plate | 2.71e-10 | 82 |
regional part of forebrain | 4.21e-10 | 41 |
forebrain | 4.21e-10 | 41 |
anterior neural tube | 4.21e-10 | 41 |
future forebrain | 4.21e-10 | 41 |
brain | 5.96e-10 | 68 |
future brain | 5.96e-10 | 68 |
brain grey matter | 1.67e-07 | 34 |
gray matter | 1.67e-07 | 34 |
telencephalon | 2.58e-07 | 34 |