FFCP PHASE1:Hg19::chr13:32889208..32889236,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:32889208..32889236,+
|short_description=p3@BRCA2
|description=CAGE_peak_3_at_BRCA2_5end
|association_with_transcript=-374bp_to_ENST00000380152_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=675 | |EntrezGene=675 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1101 | |HGNC=1101 | ||
|TSSclassifier=strong | |||
|UniProt=P51587 | |UniProt=P51587 | ||
|association_with_transcript=-374bp_to_ENST00000380152_5end | |||
|cluster_id=chr13:32889208..32889236,+ | |||
|coexpression_cluster_id=C520 | |||
|description=CAGE_peak_3_at_BRCA2_5end | |||
|id=chr13:32889208..32889236,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.12e-51!140;CL:0000037!3.61e-49!172;CL:0000566!3.61e-49!172;CL:0000988!7.82e-47!182;CL:0002032!3.17e-44!165;CL:0000837!3.17e-44!165;CL:0002087!1.98e-40!119;CL:0002031!2.92e-40!124;CL:0002057!9.04e-31!42;CL:0000860!2.65e-27!45;CL:0000766!2.36e-26!76;CL:0000763!2.23e-25!112;CL:0000049!2.23e-25!112;CL:0000557!1.62e-23!71;CL:0000839!1.34e-21!70;CL:0002009!1.58e-21!65;CL:0002194!1.13e-20!63;CL:0000576!1.13e-20!63;CL:0000040!1.13e-20!63;CL:0000559!1.13e-20!63;CL:0000134!5.78e-19!358;CL:0002320!7.04e-18!365;CL:0000542!4.22e-17!53;CL:0000051!4.22e-17!53;CL:0000838!6.40e-17!52;CL:0000219!1.81e-16!390;CL:0000791!2.17e-13!18;CL:0000789!2.17e-13!18;CL:0002420!2.17e-13!18;CL:0002419!2.17e-13!18;CL:0000790!2.17e-13!18;CL:0000084!7.50e-12!25;CL:0000827!7.50e-12!25;CL:0000034!1.01e-11!444;CL:0000048!6.46e-11!430;CL:0000723!2.39e-10!436;CL:0000625!1.77e-08!11;CL:0002393!6.76e-08!9;CL:0002397!6.76e-08!9;CL:0000451!3.36e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.00e-38;33!CL:0002057;2.00e-38;33!CL:0000576;9.14e-29;48!CL:0000473;2.27e-26;39!CL:0000234;2.27e-26;39!CL:0000766;1.10e-20;69!CL:0000791;1.71e-19;18!CL:0000789;1.71e-19;18!CL:0002419;1.71e-19;18!CL:0002087;2.75e-18;104!CL:0000084;6.70e-15;25!CL:0000094;6.11e-13;8!CL:0000624;1.14e-12;6!CL:0000738;1.73e-12;136!CL:0002393;1.77e-12;6!CL:0002397;1.77e-12;6!CL:0000081;1.31e-11;11!CL:0000763;3.55e-11;100!CL:0000625;1.31e-10;11!CL:0000988;2.58e-09;177!CL:0000542;1.41e-08;53!CL:0000623;3.92e-08;3!CL:0000767;6.55e-08;3!CL:0000219;8.52e-08;193!CL:0000784;1.37e-07;3!CL:0000898;2.47e-07;3!CL:0000775;8.65e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.34e-66,136;CL:0000037,4.41e-57,168;CL:0000860,2.07e-55,42;CL:0002057,2.07e-55,42;CL:0000988,7.04e-55,177;CL:0002087,9.66e-54,115;CL:0002032,2.90e-49,161;CL:0000837,2.90e-49,161;CL:0002031,1.07e-48,120;CL:0000766,1.08e-48,72;CL:0000473,4.71e-47,48;CL:0000234,4.71e-47,48;CL:0000557,5.23e-38,67;CL:0002194,7.10e-38,59;CL:0000576,7.10e-38,59;CL:0000040,7.10e-38,59;CL:0000559,7.10e-38,59;CL:0000839,1.36e-36,66;CL:0002009,2.78e-36,61;CL:0000763,4.41e-34,108;CL:0000049,4.41e-34,108;CL:0000791,1.31e-19,18;CL:0000789,1.31e-19,18;CL:0002420,1.31e-19,18;CL:0002419,1.31e-19,18;CL:0000790,1.31e-19,18;CL:0000134,6.51e-18,354;CL:0002320,3.56e-17,361;CL:0000084,4.95e-15,25;CL:0000827,4.95e-15,25;CL:0000219,1.38e-14,386;CL:0002393,9.20e-14,9;CL:0002397,9.20e-14,9;CL:0000838,1.32e-13,52;CL:0000542,3.10e-13,53;CL:0000051,3.10e-13,53;CL:0000034,6.81e-13,441;CL:0000094,7.49e-13,8;CL:0000624,1.30e-12,6;CL:0000048,5.05e-12,427;CL:0000723,1.39e-11,433;CL:0000081,1.44e-11,11;CL:0000625,9.43e-11,11;CL:0000623,4.02e-08,3;CL:0000825,4.02e-08,3;CL:0000767,6.15e-08,3;CL:0000784,1.27e-07,3;CL:0000898,2.58e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.43e-39;42!CL:0000790;1.71e-19;18!CL:0000049;1.33e-09;108!CL:0000051;1.41e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.33e-24!102;UBERON:0003061!8.33e-24!102;UBERON:0001474!2.03e-22!86;UBERON:0002371!3.91e-21!80;UBERON:0002193!2.18e-20!112;UBERON:0002384!2.94e-17!375;UBERON:0004765!1.08e-16!101;UBERON:0001434!1.08e-16!101;UBERON:0002405!6.53e-14!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.96e-34,76;UBERON:0002390,2.24e-33,98;UBERON:0003061,2.24e-33,98;UBERON:0001474,1.48e-32,82;UBERON:0002193,4.80e-29,108;UBERON:0004765,1.37e-28,90;UBERON:0002405,1.58e-27,93;UBERON:0001434,1.54e-24,100;UBERON:0002384,3.59e-16,371;UBERON:0002204,3.35e-10,167;UBERON:0003081,1.28e-09,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0.534893840235659,0.0821005894499457,0.472264687882075,14.1611139665605,12.2825407391108,4.95411594611443,0,0,0,0.542270404062111,0.426507697462265,7.63361142270603,7.75593571944628,4.01088894940283,6.2933152507597,0,0.971680998056939,0,1.30858414901608,0.377875943688809,0.970336244751265,1.62700325833979,0.411167888021826,2.16794459626573,5.46615545412086,5.63553554364021,12.2970759542064,3.10271112662957,3.87290810150296,2.70852973188684,0.941211697713023,1.09162460023138,2.02251136000576,3.97909060082173,3.20929027076094,3.19668562899521,4.94776950280074,3.98927315243264,8.52449501065388,5.22376629531451,2.8369261234557,3.11411124497787,6.02996796616184,3.12889751052121,8.90474263290978,3.02699751316684,6.2607198117886,7.59509729858123,1.69004229049553,3.4016687994407,2.51590374610051,1.90958672949042,0.750884464207532,1.6072558669708,1.71007646244749,0.99458338599545,2.92262646023414,0,0.546138611262131,0.889509253863555,3.41384178053206,0.400395987036012,1.14950487990897,0.661044872784862,0,3.98449078376614,0.587237189370939,2.6759125968766,2.64342657158052,3.92355994087075,2.37045676297569,3.34406609193516,2.35806457649499,4.5232329779892,0,3.2592226663359,5.20792586308207,1.94826728407911,0.891283655081389,4.12448270464772,2.65840673500345,3.24964636518019,0,0,0,0.552700035571697,0,2.96573126324121,1.33770414044857,0,0.226618685395132,5.3650869104269,6.8725489096526,3.28925599625354,1.91139248594458,2.60433381542567,1.90090408889675,1.50575119077773,0.76791966692651,2.49861453104692,0.473554504088034,0.821127996921047,8.0642697289893,6.95344509037119,4.05508330871837,0,0,0,0,0,0,0.795285947051099,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0,0.324547393654683,0.696518949197069,0.531831842075461,7.15471872916026,3.43196946468077,7.80060752792086,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,5.27121669744253,0,0,0,0,0,0.286836620748814,0,0,0,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0.168776332241266,0,0.504867548488229,0,0.161646056818812,0.355009592516614,0.10075209822764,0,0,0,0,0.609868530647977,0.265059536642971,0,0.310983165046111,0,0,0,0.643240938192885,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0.492663237895943,0,1.4512968087854,1.29707958075265,0.75745460055828,0.063497894292169,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0,0,0.672510863961164,12.2159071325195,11.2126338926949,13.0909897005343,0,0,0,0,0,2.24702107184155,8.97484377612075,1.24324654030811,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0,0,0,1.03384013061444,4.31428401637234,1.81436848265855,0,0,0,0,0.306923946576125,0,0,0,0.321707842287215,0,0,0,0.246381468041427,0,0,0.362578348774867,0,0,0.114814448164607,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.447749509444357,0.219259876645935,0,0,0,0,0,0.366277859273374,0.165018999841176,0,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0.188287601553558,0,0,0,0,2.02979043692868,0.764637207142375,0.569647187174163,0,0,0,0,0,0,0,1.47024129588619,0.185803175125719,0.144269212976445,1.77854608371035,0,0,0.191505370132367,0.211673582723883,0.324621940274555,0.842391534340376,0,0.783399478865116,0,0,1.1241165257259,0.80719882876419,0.425846237690326,1.37402137902306,0.614481528616916,0,0.667396566847634,0.19538809540204,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0.994147647766298,0,0.111308705022906,0.988823245360557,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.227884111694002,0.46112780877612,0,0.217294743844016,0.31900115973192,0,0.533034776018635,0,0.31396051279005,0,0,0,0,0.189753732724185,0.158936578980379,0,0.652931232636591,0.424059214301822,0,0,0.0884575645033392,0,2.6686901581256,0.741383633679017,0.626531697032732,0,0,0,0.91227394607833,0,0,0,0,0,0.126373159256976,15.6336356191072,0.933193722575224,0,0,0.627865836814451,0,0.284609546029793,0,0,0,0.34823682632161,0,0.171986032471617,0,0,0,0,1.3238419003725,0,0,0,0.0633107959558787,1.56441106187842,0.64127056201227,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0.203996435272644,0,0,0,2.55493176133945,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0.164831716762333,0.13480708770837,0.0984274815147488,0.338693328263138,0.795229689809303,0,0.482259445395058,0.825236619583403,1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| ||
|short_description=p3@BRCA2 | |||
}} | }} |
Latest revision as of 03:55, 17 September 2015
Short description: | p3@BRCA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BRCA2_5end |
Coexpression cluster: | C520_Natural_CD14_CD8_Basophils_CD4_Peripheral_CD34 |
Association with transcript: | -374bp_to_ENST00000380152_5end |
EntrezGene: | BRCA2 |
HGNC: | 1101 |
UniProt: | P51587 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.96e-34 | 76 |
hematopoietic system | 2.24e-33 | 98 |
blood island | 2.24e-33 | 98 |
bone element | 1.48e-32 | 82 |
hemolymphoid system | 4.80e-29 | 108 |
skeletal element | 1.37e-28 | 90 |
immune system | 1.58e-27 | 93 |
skeletal system | 1.54e-24 | 100 |
connective tissue | 3.59e-16 | 371 |
musculoskeletal system | 3.35e-10 | 167 |
lateral plate mesoderm | 1.28e-09 | 203 |