FFCP PHASE1:Hg19::chr14:93673574..93673634,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:93673574..93673634,+
|short_description=p1@UBR7
|description=CAGE_peak_1_at_UBR7_5end
|association_with_transcript=0bp_to_ENST00000553674,ENST00000554232,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55148 | |EntrezGene=55148 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20344 | |HGNC=20344 | ||
|TSSclassifier=strong | |||
|UniProt=G3V253,G3V2G3,G3V336 | |UniProt=G3V253,G3V2G3,G3V336 | ||
|association_with_transcript=0bp_to_ENST00000553674,ENST00000554232,ENST00000556871_5end | |||
|cluster_id=chr14:93673574..93673634,+ | |||
|description=CAGE_peak_1_at_UBR7_5end | |||
|id=chr14:93673574..93673634,+ | |||
|ontology_enrichment_celltype=CL:0000945!3.53e-07!24;CL:0000826!3.53e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000945;3.86e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,3.53e-07,24;CL:0000826,3.53e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2531!1.06e-16!51;DOID:0060083!1.06e-16!51;DOID:1240!3.31e-14!39;DOID:162!5.60e-14!235;DOID:14566!2.37e-13!239;DOID:8692!5.77e-11!31;DOID:0050686!1.71e-09!137 | |||
|ontology_enrichment_disease_v019=DOID:1240;3.89e-11;39!DOID:2531;1.33e-10;51!DOID:0060083;1.33e-10;51!DOID:8692;1.50e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.06e-16,51;DOID:0060083,1.06e-16,51;DOID:1240,3.31e-14,39;DOID:162,5.60e-14,235;DOID:14566,2.37e-13,239;DOID:8692,5.77e-11,31;DOID:0050686,1.71e-09,137 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.24e-14!82;UBERON:0000073!1.47e-14!94;UBERON:0001016!1.47e-14!94;UBERON:0001049!5.46e-14!57;UBERON:0005068!5.46e-14!57;UBERON:0006241!5.46e-14!57;UBERON:0007135!5.46e-14!57;UBERON:0002780!1.30e-13!41;UBERON:0001890!1.30e-13!41;UBERON:0006240!1.30e-13!41;UBERON:0005743!1.52e-13!86;UBERON:0003080!4.13e-13!42;UBERON:0001893!1.08e-12!34;UBERON:0001869!2.47e-12!32;UBERON:0002791!2.60e-12!33;UBERON:0000955!3.20e-12!69;UBERON:0006238!3.20e-12!69;UBERON:0002020!3.21e-12!34;UBERON:0003528!3.21e-12!34;UBERON:0007023!4.63e-12!115;UBERON:0002616!3.80e-11!59;UBERON:0000956!1.39e-09!25;UBERON:0000203!1.39e-09!25;UBERON:0002619!2.89e-08!22;UBERON:0001950!4.00e-08!20;UBERON:0002346!4.78e-08!90;UBERON:0003075!1.58e-07!86;UBERON:0007284!1.58e-07!86;UBERON:0000924!9.17e-07!173;UBERON:0006601!9.17e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.12e-11;32!UBERON:0001893;3.55e-11;34!UBERON:0002791;4.19e-11;32!UBERON:0003528;6.68e-11;34!UBERON:0002020;6.68e-11;34!UBERON:0002780;4.85e-10;41!UBERON:0001890;4.85e-10;41!UBERON:0000956;1.31e-09;25!UBERON:0000203;1.31e-09;25!UBERON:0000073;1.36e-08;53!UBERON:0002616;1.36e-08;53!UBERON:0002619;2.78e-08;22!UBERON:0001950;3.85e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.02e-16,89;UBERON:0001017,5.83e-15,81;UBERON:0001049,2.08e-14,56;UBERON:0005068,2.08e-14,56;UBERON:0006241,2.08e-14,56;UBERON:0007135,2.08e-14,56;UBERON:0000073,5.10e-14,53;UBERON:0002616,5.10e-14,53;UBERON:0002780,1.30e-13,41;UBERON:0001890,1.30e-13,41;UBERON:0003080,1.30e-13,41;UBERON:0006240,1.30e-13,41;UBERON:0001893,1.08e-12,34;UBERON:0000955,1.52e-12,68;UBERON:0006238,1.52e-12,68;UBERON:0001869,2.47e-12,32;UBERON:0003528,3.21e-12,34;UBERON:0002020,3.21e-12,34;UBERON:0002791,4.82e-12,32;UBERON:0007023,8.55e-12,114;UBERON:0000956,1.39e-09,25;UBERON:0000203,1.39e-09,25;UBERON:0002346,1.48e-08,86;UBERON:0002619,2.89e-08,22;UBERON:0001950,4.00e-08,20;UBERON:0003075,5.03e-08,82;UBERON:0007284,5.03e-08,82;UBERON:0011216,2.13e-07,223;UBERON:0003056,8.43e-07,61;UBERON:0004121,8.50e-07,171;UBERON:0000924,8.50e-07,171;UBERON:0006601,8.50e-07,171 | |||
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| ||
|short_description=p1@UBR7 | |||
}} | }} |
Latest revision as of 16:10, 16 September 2015
Short description: | p1@UBR7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UBR7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000553674, ENST00000554232, ENST00000556871_5end |
EntrezGene: | UBR7 |
HGNC: | 20344 |
UniProt: | G3V253G3V2G3G3V336 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 3.53e-07 | 24 |
pro-B cell | 3.53e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.02e-16 | 89 |
central nervous system | 5.83e-15 | 81 |
neural tube | 2.08e-14 | 56 |
neural rod | 2.08e-14 | 56 |
future spinal cord | 2.08e-14 | 56 |
neural keel | 2.08e-14 | 56 |
regional part of nervous system | 5.10e-14 | 53 |
regional part of brain | 5.10e-14 | 53 |
regional part of forebrain | 1.30e-13 | 41 |
forebrain | 1.30e-13 | 41 |
anterior neural tube | 1.30e-13 | 41 |
future forebrain | 1.30e-13 | 41 |
telencephalon | 1.08e-12 | 34 |
brain | 1.52e-12 | 68 |
future brain | 1.52e-12 | 68 |
cerebral hemisphere | 2.47e-12 | 32 |
brain grey matter | 3.21e-12 | 34 |
gray matter | 3.21e-12 | 34 |
regional part of telencephalon | 4.82e-12 | 32 |
adult organism | 8.55e-12 | 114 |
cerebral cortex | 1.39e-09 | 25 |
pallium | 1.39e-09 | 25 |
neurectoderm | 1.48e-08 | 86 |
regional part of cerebral cortex | 2.89e-08 | 22 |
neocortex | 4.00e-08 | 20 |
neural plate | 5.03e-08 | 82 |
presumptive neural plate | 5.03e-08 | 82 |
organ system subdivision | 2.13e-07 | 223 |
pre-chordal neural plate | 8.43e-07 | 61 |
ectoderm-derived structure | 8.50e-07 | 171 |
ectoderm | 8.50e-07 | 171 |
presumptive ectoderm | 8.50e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.06e-16 | 51 |
immune system cancer | 1.06e-16 | 51 |
leukemia | 3.31e-14 | 39 |
cancer | 5.60e-14 | 235 |
disease of cellular proliferation | 2.37e-13 | 239 |
myeloid leukemia | 5.77e-11 | 31 |
organ system cancer | 1.71e-09 | 137 |