FFCP PHASE1:Hg19::chr15:66084481..66084500,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:66084481..66084500,-
|short_description=p3@DENND4A
|description=CAGE_peak_3_at_DENND4A_5end
|association_with_transcript=130bp_to_ENST00000431932,ENST0000...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10260 | |EntrezGene=10260 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24321 | |HGNC=24321 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z401,E7EPL3,Q05C90 | |UniProt=Q7Z401,E7EPL3,Q05C90 | ||
|association_with_transcript=130bp_to_ENST00000431932,ENST00000443035,NM_001144823,NM_005848,uc002aph.2,uc002api.2,uc002apj.3,uc010ujj.1_5end | |||
|cluster_id=chr15:66084481..66084500,- | |||
|description=CAGE_peak_3_at_DENND4A_5end | |||
|id=chr15:66084481..66084500,- | |||
|ontology_enrichment_celltype=CL:0000738!1.04e-33!140;CL:0000037!2.17e-33!172;CL:0000566!2.17e-33!172;CL:0000988!7.47e-32!182;CL:0002032!3.33e-31!165;CL:0000837!3.33e-31!165;CL:0002031!5.85e-28!124;CL:0002087!2.61e-25!119;CL:0000542!7.26e-20!53;CL:0000051!7.26e-20!53;CL:0000838!2.29e-19!52;CL:0000945!5.06e-13!24;CL:0000826!5.06e-13!24;CL:0000763!6.67e-13!112;CL:0000049!6.67e-13!112;CL:0000766!1.47e-10!76;CL:0000557!6.06e-10!71;CL:0000839!2.89e-09!70;CL:0000236!2.09e-08!14;CL:0002009!1.40e-07!65;CL:0000860!6.52e-07!45;CL:0000791!6.87e-07!18;CL:0000789!6.87e-07!18;CL:0002420!6.87e-07!18;CL:0002419!6.87e-07!18;CL:0000790!6.87e-07!18;CL:0000084!9.59e-07!25;CL:0000827!9.59e-07!25;CL:0002194!9.63e-07!63;CL:0000576!9.63e-07!63;CL:0000040!9.63e-07!63;CL:0000559!9.63e-07!63;CL:0002057!9.67e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000945;9.38e-18;24!CL:0000542;1.11e-13;53!CL:0002087;1.21e-12;104!CL:0000236;1.14e-10;13!CL:0000738;7.62e-08;136!CL:0000791;1.37e-07;18!CL:0000789;1.37e-07;18!CL:0002419;1.37e-07;18!CL:0000576;6.35e-07;48!CL:0000084;7.93e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.18e-39,136;CL:0000988,5.87e-36,177;CL:0000037,1.09e-35,168;CL:0002032,1.94e-33,161;CL:0000837,1.94e-33,161;CL:0002031,3.83e-33,120;CL:0002087,1.61e-29,115;CL:0000542,1.86e-24,53;CL:0000051,1.86e-24,53;CL:0000838,9.42e-24,52;CL:0000945,1.38e-17,24;CL:0000826,1.38e-17,24;CL:0000763,5.40e-12,108;CL:0000049,5.40e-12,108;CL:0000766,3.09e-11,72;CL:0000557,6.67e-11,67;CL:0000236,7.10e-11,14;CL:0000839,5.26e-10,66;CL:0002009,8.86e-08,61;CL:0000791,1.44e-07,18;CL:0000789,1.44e-07,18;CL:0002420,1.44e-07,18;CL:0002419,1.44e-07,18;CL:0000790,1.44e-07,18;CL:0000860,2.13e-07,42;CL:0002057,2.13e-07,42;CL:0000084,9.28e-07,25;CL:0000827,9.28e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;1.11e-13;53!CL:0000790;1.37e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.80e-12!102;UBERON:0003061!2.80e-12!102;UBERON:0007023!1.09e-11!115;UBERON:0002193!2.06e-10!112;UBERON:0001049!8.34e-08!57;UBERON:0005068!8.34e-08!57;UBERON:0006241!8.34e-08!57;UBERON:0007135!8.34e-08!57;UBERON:0002371!7.11e-07!80;UBERON:0001474!8.51e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.82e-09;15!UBERON:0000179;5.82e-09;15!UBERON:0000463;5.82e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.17e-16,98;UBERON:0003061,7.17e-16,98;UBERON:0002193,7.97e-14,108;UBERON:0007023,9.58e-10,114;UBERON:0000178,4.89e-09,15;UBERON:0000179,4.89e-09,15;UBERON:0000463,4.89e-09,15;UBERON:0002371,1.29e-08,76;UBERON:0002405,2.27e-08,93;UBERON:0001474,5.12e-08,82;UBERON:0001049,4.94e-07,56;UBERON:0005068,4.94e-07,56;UBERON:0006241,4.94e-07,56;UBERON:0007135,4.94e-07,56;UBERON:0004765,5.06e-07,90 | |||
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| ||
|short_description=p3@DENND4A | |||
}} | }} |
Latest revision as of 15:41, 18 September 2015
Short description: | p3@DENND4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DENND4A_5end |
Coexpression cluster: | NA |
Association with transcript: | 130bp_to_ENST00000431932, ENST00000443035, NM_001144823, NM_005848, uc002aph.2, uc002api.2, uc002apj.3, uc010ujj.1_5end |
EntrezGene: | DENND4A |
HGNC: | 24321 |
UniProt: | Q7Z401E7EPL3Q05C90 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.18e-39 | 136 |
hematopoietic cell | 5.87e-36 | 177 |
hematopoietic stem cell | 1.09e-35 | 168 |
hematopoietic oligopotent progenitor cell | 1.94e-33 | 161 |
hematopoietic multipotent progenitor cell | 1.94e-33 | 161 |
hematopoietic lineage restricted progenitor cell | 3.83e-33 | 120 |
nongranular leukocyte | 1.61e-29 | 115 |
lymphocyte | 1.86e-24 | 53 |
common lymphoid progenitor | 1.86e-24 | 53 |
lymphoid lineage restricted progenitor cell | 9.42e-24 | 52 |
lymphocyte of B lineage | 1.38e-17 | 24 |
pro-B cell | 1.38e-17 | 24 |
myeloid cell | 5.40e-12 | 108 |
common myeloid progenitor | 5.40e-12 | 108 |
myeloid leukocyte | 3.09e-11 | 72 |
granulocyte monocyte progenitor cell | 6.67e-11 | 67 |
B cell | 7.10e-11 | 14 |
myeloid lineage restricted progenitor cell | 5.26e-10 | 66 |
macrophage dendritic cell progenitor | 8.86e-08 | 61 |
mature alpha-beta T cell | 1.44e-07 | 18 |
alpha-beta T cell | 1.44e-07 | 18 |
immature T cell | 1.44e-07 | 18 |
mature T cell | 1.44e-07 | 18 |
immature alpha-beta T cell | 1.44e-07 | 18 |
classical monocyte | 2.13e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.13e-07 | 42 |
T cell | 9.28e-07 | 25 |
pro-T cell | 9.28e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.17e-16 | 98 |
blood island | 7.17e-16 | 98 |
hemolymphoid system | 7.97e-14 | 108 |
adult organism | 9.58e-10 | 114 |
blood | 4.89e-09 | 15 |
haemolymphatic fluid | 4.89e-09 | 15 |
organism substance | 4.89e-09 | 15 |
bone marrow | 1.29e-08 | 76 |
immune system | 2.27e-08 | 93 |
bone element | 5.12e-08 | 82 |
neural tube | 4.94e-07 | 56 |
neural rod | 4.94e-07 | 56 |
future spinal cord | 4.94e-07 | 56 |
neural keel | 4.94e-07 | 56 |
skeletal element | 5.06e-07 | 90 |