FFCP PHASE1:Hg19::chr8:82355027..82355036,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5375 | |EntrezGene=5375 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=9117 | |HGNC=9117 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=333bp_to_DQ786226_5end | |association_with_transcript=333bp_to_DQ786226_5end | ||
|cluster_id=chr8:82355027..82355036,- | |||
|coexpression_cluster_id=C1033 | |||
|description=CAGE_peak_5_at_PMP2_5end | |description=CAGE_peak_5_at_PMP2_5end | ||
|id=chr8:82355027..82355036,- | |id=chr8:82355027..82355036,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;3.66e-23;3!UBERON:0003057;3.66e-23;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.46e-61!57;UBERON:0005068!5.46e-61!57;UBERON:0006241!5.46e-61!57;UBERON:0007135!5.46e-61!57;UBERON:0002616!4.54e-49!59;UBERON:0001017!7.80e-48!82;UBERON:0007023!1.27e-45!115;UBERON:0005743!1.99e-45!86;UBERON:0000955!1.57e-44!69;UBERON:0006238!1.57e-44!69;UBERON:0003075!1.70e-42!86;UBERON:0007284!1.70e-42!86;UBERON:0002308!3.64e-42!9;UBERON:0000125!3.64e-42!9;UBERON:0002020!3.09e-41!34;UBERON:0003528!3.09e-41!34;UBERON:0000073!9.71e-41!94;UBERON:0001016!9.71e-41!94;UBERON:0002346!2.09e-40!90;UBERON:0002780!4.68e-38!41;UBERON:0001890!4.68e-38!41;UBERON:0006240!4.68e-38!41;UBERON:0002298!2.58e-37!8;UBERON:0003080!4.33e-37!42;UBERON:0001893!1.05e-35!34;UBERON:0001869!5.71e-33!32;UBERON:0002791!4.45e-32!33;UBERON:0002420!7.18e-32!9;UBERON:0007245!7.18e-32!9;UBERON:0010009!7.18e-32!9;UBERON:0010011!7.18e-32!9;UBERON:0000454!7.18e-32!9;UBERON:0009663!2.06e-30!7;UBERON:0000033!7.00e-28!123;UBERON:0000153!2.26e-26!129;UBERON:0007811!2.26e-26!129;UBERON:0003076!1.20e-25!15;UBERON:0003057!1.20e-25!15;UBERON:0003056!1.20e-24!61;UBERON:0004121!1.37e-22!169;UBERON:0000924!5.89e-22!173;UBERON:0006601!5.89e-22!173;UBERON:0006331!1.48e-19!3;UBERON:0000349!1.49e-19!5;UBERON:0001896!1.90e-19!3;UBERON:0005290!1.90e-19!3;UBERON:0010096!1.90e-19!3;UBERON:0000988!2.43e-19!3;UBERON:0004733!2.95e-18!12;UBERON:0002028!2.95e-18!12;UBERON:0007277!2.95e-18!12;UBERON:0004732!8.22e-17!13;UBERON:0000025!3.60e-16!194;UBERON:0002619!6.85e-16!22;UBERON:0000956!6.36e-14!25;UBERON:0000203!6.36e-14!25;UBERON:0000369!7.76e-14!4;UBERON:0002435!7.76e-14!4;UBERON:0000204!7.76e-14!4;UBERON:0010082!7.76e-14!4;UBERON:0002148!8.58e-14!2;UBERON:0009662!8.58e-14!2;UBERON:0001954!2.06e-13!2;UBERON:0003022!2.06e-13!2;UBERON:0002421!2.06e-13!2;UBERON:0002600!2.06e-13!2;UBERON:0001875!2.49e-13!2;UBERON:0006514!2.49e-13!2;UBERON:0004111!2.88e-13!241;UBERON:0000477!1.96e-11!286;UBERON:0000064!5.28e-10!219;UBERON:0001950!5.76e-10!20;UBERON:0000200!1.58e-09!6;UBERON:0002240!1.60e-09!3;UBERON:0000483!3.56e-09!309;UBERON:0002771!4.68e-09!3;UBERON:0000119!4.91e-09!312;UBERON:0005383!6.74e-09!3;UBERON:0005382!6.74e-09!3;UBERON:0000475!1.54e-08!365;UBERON:0002079!9.71e-08!1;UBERON:0003112!1.61e-07!1;UBERON:0000032!1.61e-07!1;UBERON:0005253!1.61e-07!1;UBERON:0003128!1.61e-07!1;UBERON:0002241!1.61e-07!1;UBERON:0001703!1.61e-07!1;UBERON:0004761!1.61e-07!1;UBERON:0009617!1.61e-07!1;UBERON:0002038!1.72e-07!1;UBERON:0009661!1.72e-07!1;UBERON:0001874!2.21e-07!1;UBERON:0001871!2.35e-07!7;UBERON:0007190!4.34e-07!1;UBERON:0001882!4.61e-07!1;UBERON:0005403!4.61e-07!1;UBERON:0002680!9.19e-07!9;UBERON:0001895!9.19e-07!9;UBERON:0010092!9.19e-07!9 | |ontology_enrichment_uberon=UBERON:0001049!5.46e-61!57;UBERON:0005068!5.46e-61!57;UBERON:0006241!5.46e-61!57;UBERON:0007135!5.46e-61!57;UBERON:0002616!4.54e-49!59;UBERON:0001017!7.80e-48!82;UBERON:0007023!1.27e-45!115;UBERON:0005743!1.99e-45!86;UBERON:0000955!1.57e-44!69;UBERON:0006238!1.57e-44!69;UBERON:0003075!1.70e-42!86;UBERON:0007284!1.70e-42!86;UBERON:0002308!3.64e-42!9;UBERON:0000125!3.64e-42!9;UBERON:0002020!3.09e-41!34;UBERON:0003528!3.09e-41!34;UBERON:0000073!9.71e-41!94;UBERON:0001016!9.71e-41!94;UBERON:0002346!2.09e-40!90;UBERON:0002780!4.68e-38!41;UBERON:0001890!4.68e-38!41;UBERON:0006240!4.68e-38!41;UBERON:0002298!2.58e-37!8;UBERON:0003080!4.33e-37!42;UBERON:0001893!1.05e-35!34;UBERON:0001869!5.71e-33!32;UBERON:0002791!4.45e-32!33;UBERON:0002420!7.18e-32!9;UBERON:0007245!7.18e-32!9;UBERON:0010009!7.18e-32!9;UBERON:0010011!7.18e-32!9;UBERON:0000454!7.18e-32!9;UBERON:0009663!2.06e-30!7;UBERON:0000033!7.00e-28!123;UBERON:0000153!2.26e-26!129;UBERON:0007811!2.26e-26!129;UBERON:0003076!1.20e-25!15;UBERON:0003057!1.20e-25!15;UBERON:0003056!1.20e-24!61;UBERON:0004121!1.37e-22!169;UBERON:0000924!5.89e-22!173;UBERON:0006601!5.89e-22!173;UBERON:0006331!1.48e-19!3;UBERON:0000349!1.49e-19!5;UBERON:0001896!1.90e-19!3;UBERON:0005290!1.90e-19!3;UBERON:0010096!1.90e-19!3;UBERON:0000988!2.43e-19!3;UBERON:0004733!2.95e-18!12;UBERON:0002028!2.95e-18!12;UBERON:0007277!2.95e-18!12;UBERON:0004732!8.22e-17!13;UBERON:0000025!3.60e-16!194;UBERON:0002619!6.85e-16!22;UBERON:0000956!6.36e-14!25;UBERON:0000203!6.36e-14!25;UBERON:0000369!7.76e-14!4;UBERON:0002435!7.76e-14!4;UBERON:0000204!7.76e-14!4;UBERON:0010082!7.76e-14!4;UBERON:0002148!8.58e-14!2;UBERON:0009662!8.58e-14!2;UBERON:0001954!2.06e-13!2;UBERON:0003022!2.06e-13!2;UBERON:0002421!2.06e-13!2;UBERON:0002600!2.06e-13!2;UBERON:0001875!2.49e-13!2;UBERON:0006514!2.49e-13!2;UBERON:0004111!2.88e-13!241;UBERON:0000477!1.96e-11!286;UBERON:0000064!5.28e-10!219;UBERON:0001950!5.76e-10!20;UBERON:0000200!1.58e-09!6;UBERON:0002240!1.60e-09!3;UBERON:0000483!3.56e-09!309;UBERON:0002771!4.68e-09!3;UBERON:0000119!4.91e-09!312;UBERON:0005383!6.74e-09!3;UBERON:0005382!6.74e-09!3;UBERON:0000475!1.54e-08!365;UBERON:0002079!9.71e-08!1;UBERON:0003112!1.61e-07!1;UBERON:0000032!1.61e-07!1;UBERON:0005253!1.61e-07!1;UBERON:0003128!1.61e-07!1;UBERON:0002241!1.61e-07!1;UBERON:0001703!1.61e-07!1;UBERON:0004761!1.61e-07!1;UBERON:0009617!1.61e-07!1;UBERON:0002038!1.72e-07!1;UBERON:0009661!1.72e-07!1;UBERON:0001874!2.21e-07!1;UBERON:0001871!2.35e-07!7;UBERON:0007190!4.34e-07!1;UBERON:0001882!4.61e-07!1;UBERON:0005403!4.61e-07!1;UBERON:0002680!9.19e-07!9;UBERON:0001895!9.19e-07!9;UBERON:0010092!9.19e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;1.09e-44;6!UBERON:0002148;3.61e-34;2!UBERON:0006331;3.61e-34;2!UBERON:0009662;3.61e-34;2!UBERON:0000988;2.62e-23;3!UBERON:0001896;3.66e-23;3!UBERON:0002240;3.66e-23;3!UBERON:0005174;3.66e-23;3!UBERON:0005290;3.66e-23;3!UBERON:0001137;3.66e-23;3!UBERON:0004733;4.86e-23;12!UBERON:0002028;4.86e-23;12!UBERON:0004732;2.28e-21;13!UBERON:0002680;1.04e-08;9!UBERON:0000125;1.04e-08;9!UBERON:0002308;1.04e-08;9!UBERON:0001895;1.04e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,1.22e-44,6;UBERON:0003076,2.90e-40,15;UBERON:0003057,2.90e-40,15;UBERON:0002148,3.61e-34,2;UBERON:0006331,3.61e-34,2;UBERON:0009662,3.61e-34,2;UBERON:0000988,2.62e-23,3;UBERON:0002240,3.27e-23,3;UBERON:0005174,3.27e-23,3;UBERON:0001137,3.27e-23,3;UBERON:0001896,4.09e-23,3;UBERON:0005290,4.09e-23,3;UBERON:0010096,4.09e-23,3;UBERON:0004733,5.14e-23,12;UBERON:0002028,5.14e-23,12;UBERON:0007277,5.14e-23,12;UBERON:0004732,2.40e-21,13;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0002680,1.04e-08,9;UBERON:0000125,1.04e-08,9;UBERON:0002308,1.04e-08,9;UBERON:0001895,1.04e-08,9;UBERON:0010092,1.04e-08,9;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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|short_description=p5@PMP2 | |short_description=p5@PMP2 | ||
}} | }} |
Latest revision as of 05:53, 19 September 2015
Short description: | p5@PMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PMP2_5end |
Coexpression cluster: | C1033_locus_medulla_spinal_globus_amygdala_pineal_hippocampus |
Association with transcript: | 333bp_to_DQ786226_5end |
EntrezGene: | PMP2 |
HGNC: | 9117 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brainstem | 1.22e-44 | 6 |
posterior neural tube | 2.90e-40 | 15 |
chordal neural plate | 2.90e-40 | 15 |
locus ceruleus | 3.61e-34 | 2 |
brainstem nucleus | 3.61e-34 | 2 |
hindbrain nucleus | 3.61e-34 | 2 |
pons | 2.62e-23 | 3 |
spinal cord | 3.27e-23 | 3 |
dorsal region element | 3.27e-23 | 3 |
dorsum | 3.27e-23 | 3 |
medulla oblongata | 4.09e-23 | 3 |
myelencephalon | 4.09e-23 | 3 |
future myelencephalon | 4.09e-23 | 3 |
segmental subdivision of hindbrain | 5.14e-23 | 12 |
hindbrain | 5.14e-23 | 12 |
presumptive hindbrain | 5.14e-23 | 12 |
segmental subdivision of nervous system | 2.40e-21 | 13 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
regional part of metencephalon | 1.04e-08 | 9 |
neural nucleus | 1.04e-08 | 9 |
nucleus of brain | 1.04e-08 | 9 |
metencephalon | 1.04e-08 | 9 |
future metencephalon | 1.04e-08 | 9 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |