Coexpression cluster:C143: Difference between revisions
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{{Coexpression_clusters | {{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252058577919365,0.141082552525447,0.28530897907286,0,0,0,0,0,0,0.323868714649035,0.441439887066732,0.403885398680789,0.772771938854328,0.718139497086834,0.686960842452741,0.80480262822629,0.743079280400998,0.677811719420709,0.833193403747721,0.773348614634313,0.701238281507613,0.847667665396804,0.768420042821026,0.695582047763762,0.783082920413564,0.710412423824959,0.772822314968974,0.890796698373783,0.771757248830971,0.721789699717636,0.95221984289076,0.685844553477127,0.82956325105582,0.774354129721908,0.762463071927049,0.754995644261803,0.807558847087115,0.643878012389328,0.675497287323882,0.891186867980104,0.797641890430696,0.650795127684496,0.766650455784811,0.596181413041228,0.662443985218074,0.495231639382133,0.523570541869179,0.453838471516169,0.52394716589884,0.501096956921213,0.450680777971495,0.330424118154027,0.475550145930845,0.391166886134781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.027549189648299,0,0,0.361385850207372,0.409454228967332,0.578881747940152,0.092892723212638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.754204804863376,0.553160249192863,0.74917926160873,0,0,0,0,0,0,0,0.0366482282265911,0,0.0271031519089981,0.0516318862226721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25593139169027,1.21932171778763,1.30048797408064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242791553592671,0.520328325145468,0.150577011075896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150306889650249,0.399673618657105,0.21494058611927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0813768443325499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0831827421014,0,0,0,0,0,0,0.0749215657724743,0,0,0,0,0.178242227335072,0.145290817496387,0.33027054911511,0.169222730114762,0.14963850419244,0.130977027813949,0.187529586342753,0.253610608288505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158219072164516,0,0,0,0,0,0,0,0,0,0,0,0.0789089986057754,0,0,0,0,0,0,0,0,0,0.492696922332985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644554282404098,0.0380625695285996,0.185552006688486,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0368115019473605,0,0,0,0,0.0283276594447047,0,0,0,0,0,0,0,0,0.100442890562395,0,0,0,0,0,0,0,0,0,0,0,0.1301578714358,0,0,0,0,0.0402022792589852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0881268324752877,0,0,0,0.0329432353726146,0,0,0,0,0.134780044382252,0,0,0,0,0,0,0,0,0,0.0593938447453515,0,0,0.0539356558948951,0,0,0.164911212366965,0,0.350774507210926,0.299361719979401,0,0,0,0,0,0,0,0,0,0,0,0,0.0456863240084368,0.00674680169097996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.031493427513643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0709257799838506,0,0,0,0,0,0,0,0,0,0,0,0,0.0299826682885844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0322859259446875,0.0858467613960337,0,0,0,0.0778431765528363,0,0,0,0.192644617366899,0.0526615420969484,0,0,0,0,0,0,0.0581752393062885,0,0,0,0.103594832628213,0,0,0,0,0,0,0,0,0,0,0.0317229404497622,0,0,0.0427459664864042,0.0369223107813652,0,0.0271819376754428,0.0261550693490902,0,0,0,0.0107322186783004,0,0.0283076897745917,0.0300822291072195,0,0,0,0,0,0,0,0,0,0.146917605400546,0|full_id=C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast|gostat_on_coexpression_clusters=GO:0005764!lysosome!1.02017609261701e-06!5660;1509;1777;3073;968;10437$GO:0000323!lytic vacuole!1.02017609261701e-06!5660;1509;1777;3073;968;10437$GO:0005773!vacuole!1.59528494725119e-06!5660;1509;1777;3073;968;10437$GO:0048770!pigment granule!0.00221597962737036!1509;10211;526$GO:0042470!melanosome!0.00221597962737036!1509;10211;526$GO:0006687!glycosphingolipid metabolic process!0.00520441115129939!5660;3073$GO:0007040!lysosome organization and biogenesis!0.00520441115129939!5660;3073$GO:0007033!vacuole organization and biogenesis!0.00553175778217785!5660;3073$GO:0044444!cytoplasmic part!0.00555041723408132!968;5660;1509;1777;114294;10211;3073;3460;526;1593;10437$GO:0006955!immune response!0.00573924456023113!2495;929;10068;11006;3903;2217$GO:0006664!glycolipid metabolic process!0.00692069824548751!5660;3073$GO:0016894!endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters!0.00692069824548751!6039;1777$GO:0042127!regulation of cell proliferation!0.00940463468647706!2495;2014;199;2896$GO:0002376!immune system process!0.00940463468647706!2495;929;10068;11006;3903;2217$GO:0045121!lipid raft!0.0105707968653924!929;10211$GO:0008285!negative regulation of cell proliferation!0.0105707968653924!2495;2014;199$GO:0006952!defense response!0.0105707968653924!199;6039;929;11006$GO:0017001!antibiotic catabolic process!0.0105707968653924!114294$GO:0042007!interleukin-18 binding!0.0105707968653924!10068$GO:0006051!N-acetylmannosamine metabolic process!0.0105707968653924!55577$GO:0008800!beta-lactamase activity!0.0105707968653924!114294$GO:0030655!beta-lactam antibiotic catabolic process!0.0105707968653924!114294$GO:0006050!mannosamine metabolic process!0.0105707968653924!55577$GO:0047749!cholestanetriol 26-monooxygenase activity!0.0105707968653924!1593$GO:0004192!cathepsin D activity!0.0105707968653924!1509$GO:0030653!beta-lactam antibiotic metabolic process!0.0105707968653924!114294$GO:0045127!N-acetylglucosamine kinase activity!0.0105707968653924!55577$GO:0006665!sphingolipid metabolic process!0.0152799311272439!5660;3073$GO:0009384!N-acylmannosamine kinase activity!0.015422426849066!55577$GO:0004098!cerebroside-sulfatase activity!0.015422426849066!5660$GO:0016889!endodeoxyribonuclease activity, producing 3'-phosphomonoesters!0.015422426849066!1777$GO:0006880!intracellular sequestering of iron ion!0.015422426849066!2495$GO:0004557!alpha-galactosidase activity!0.015422426849066!5660$GO:0004531!deoxyribonuclease II activity!0.015422426849066!1777$GO:0019964!interferon-gamma binding!0.015422426849066!3460$GO:0004906!interferon-gamma receptor activity!0.015422426849066!3460$GO:0008043!ferritin complex!0.015422426849066!2495$GO:0051704!multi-organism process!0.0172391392478423!929;3460;2217$GO:0008283!cell proliferation!0.0178054596596289!2495;2014;199;2896$GO:0016023!cytoplasmic membrane-bound vesicle!0.0184179678797753!1509;10211;526$GO:0031988!membrane-bound vesicle!0.0187157340953274!1509;10211;526$GO:0004322!ferroxidase activity!0.0194467036203606!2495$GO:0004336!galactosylceramidase activity!0.0194467036203606!5660$GO:0016724!oxidoreductase activity, oxidizing metal ions, oxygen as acceptor!0.0194467036203606!2495$GO:0019955!cytokine binding!0.0199777085932645!10068;3460$GO:0050884!neuromuscular process controlling posture!0.0232752477158334!3073$GO:0004563!beta-N-acetylhexosaminidase activity!0.0232752477158334!3073$GO:0016999!antibiotic metabolic process!0.0232752477158334!114294$GO:0006689!ganglioside catabolic process!0.0232752477158334!3073$GO:0031410!cytoplasmic vesicle!0.0254486866919106!1509;10211;526$GO:0031982!vesicle!0.0254486866919106!1509;10211;526$GO:0016019!peptidoglycan receptor activity!0.0254486866919106!929$GO:0046479!glycosphingolipid catabolic process!0.0254486866919106!3073$GO:0019961!interferon binding!0.0254486866919106!3460$GO:0004904!interferon receptor activity!0.0254486866919106!3460$GO:0004348!glucosylceramidase activity!0.0254486866919106!5660$GO:0017144!drug metabolic process!0.0299925093723461!114294$GO:0016722!oxidoreductase activity, oxidizing metal ions!0.0337936779888668!2495$GO:0019377!glycolipid catabolic process!0.0337936779888668!3073$GO:0004519!endonuclease activity!0.0342058332122311!6039;1777$GO:0019915!sequestering of lipid!0.0350444381671572!3073$GO:0001573!ganglioside metabolic process!0.0350444381671572!3073$GO:0007628!adult walking behavior!0.0350444381671572!3073$GO:0019864!IgG binding!0.0350444381671572!2217$GO:0016600!flotillin complex!0.0350444381671572!10211$GO:0042834!peptidoglycan binding!0.0371269217025048!929$GO:0004767!sphingomyelin phosphodiesterase activity!0.0371269217025048!5660$GO:0030547!receptor inhibitor activity!0.0371269217025048!10068$GO:0048019!receptor antagonist activity!0.0371269217025048!10068$GO:0015988!energy coupled proton transport, against electrochemical gradient!0.0395199232746048!526$GO:0046677!response to antibiotic!0.0395199232746048!114294$GO:0002237!response to molecule of bacterial origin!0.0395199232746048!929$GO:0016810!hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds!0.0417189232038694!5660;114294$GO:0030545!receptor regulator activity!0.0417189232038694!10068$GO:0004565!beta-galactosidase activity!0.0417189232038694!5660$GO:0004553!hydrolase activity, hydrolyzing O-glycosyl compounds!0.0421027854628203!5660;3073$GO:0042088!T-helper 1 type immune response!0.0426526501935049!10068$GO:0008329!pattern recognition receptor activity!0.0426526501935049!929$GO:0017040!ceramidase activity!0.0426526501935049!5660$GO:0015925!galactosidase activity!0.0426526501935049!5660$GO:0016812!hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides!0.0450267385812422!114294$GO:0051238!sequestering of metal ion!0.0450267385812422!2495$GO:0051707!response to other organism!0.0450267385812422!929;3460$GO:0008344!adult locomotory behavior!0.0468836779009948!3073$GO:0009308!amine metabolic process!0.0468836779009948!55577;114294;3073$GO:0005737!cytoplasm!0.0478754189442239!968;5660;1509;1777;114294;10211;3073;3460;526;1593;10437$GO:0016798!hydrolase activity, acting on glycosyl bonds!0.0478757263869966!5660;3073$GO:0008395!steroid hydroxylase activity!0.0478757263869966!1593$GO:0030149!sphingolipid catabolic 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(KEGG):04142!0.000126028279022471;0.039887950310612;5;511;Signaling in Immune system 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Latest revision as of 10:41, 17 September 2013
Full id: C143_Monocytederived_CD14_Macrophage_Dendritic_Basophils_CD14CD16_Osteoblast
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
p.value | FDR | nGenes | nPathway | Name |
---|---|---|---|---|
1.14448180130357e-07 | 7.24456980225158e-05 | 5 | 121 | Lysosome (KEGG):04142 |
0.000126028279022471 | 0.039887950310612 | 5 | 511 | Signaling in Immune system (Reactome):REACT_6900 |
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0005764 | lysosome | 1.02017609261701e-06 |
GO:0000323 | lytic vacuole | 1.02017609261701e-06 |
GO:0005773 | vacuole | 1.59528494725119e-06 |
GO:0048770 | pigment granule | 0.00221597962737036 |
GO:0042470 | melanosome | 0.00221597962737036 |
GO:0006687 | glycosphingolipid metabolic process | 0.00520441115129939 |
GO:0007040 | lysosome organization and biogenesis | 0.00520441115129939 |
GO:0007033 | vacuole organization and biogenesis | 0.00553175778217785 |
GO:0044444 | cytoplasmic part | 0.00555041723408132 |
GO:0006955 | immune response | 0.00573924456023113 |
GO:0006664 | glycolipid metabolic process | 0.00692069824548751 |
GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | 0.00692069824548751 |
GO:0042127 | regulation of cell proliferation | 0.00940463468647706 |
GO:0002376 | immune system process | 0.00940463468647706 |
GO:0045121 | lipid raft | 0.0105707968653924 |
GO:0008285 | negative regulation of cell proliferation | 0.0105707968653924 |
GO:0006952 | defense response | 0.0105707968653924 |
GO:0017001 | antibiotic catabolic process | 0.0105707968653924 |
GO:0042007 | interleukin-18 binding | 0.0105707968653924 |
GO:0006051 | N-acetylmannosamine metabolic process | 0.0105707968653924 |
GO:0008800 | beta-lactamase activity | 0.0105707968653924 |
GO:0030655 | beta-lactam antibiotic catabolic process | 0.0105707968653924 |
GO:0006050 | mannosamine metabolic process | 0.0105707968653924 |
GO:0047749 | cholestanetriol 26-monooxygenase activity | 0.0105707968653924 |
GO:0004192 | cathepsin D activity | 0.0105707968653924 |
GO:0030653 | beta-lactam antibiotic metabolic process | 0.0105707968653924 |
GO:0045127 | N-acetylglucosamine kinase activity | 0.0105707968653924 |
GO:0006665 | sphingolipid metabolic process | 0.0152799311272439 |
GO:0009384 | N-acylmannosamine kinase activity | 0.015422426849066 |
GO:0004098 | cerebroside-sulfatase activity | 0.015422426849066 |
GO:0016889 | endodeoxyribonuclease activity, producing 3'-phosphomonoesters | 0.015422426849066 |
GO:0006880 | intracellular sequestering of iron ion | 0.015422426849066 |
GO:0004557 | alpha-galactosidase activity | 0.015422426849066 |
GO:0004531 | deoxyribonuclease II activity | 0.015422426849066 |
GO:0019964 | interferon-gamma binding | 0.015422426849066 |
GO:0004906 | interferon-gamma receptor activity | 0.015422426849066 |
GO:0008043 | ferritin complex | 0.015422426849066 |
GO:0051704 | multi-organism process | 0.0172391392478423 |
GO:0008283 | cell proliferation | 0.0178054596596289 |
GO:0016023 | cytoplasmic membrane-bound vesicle | 0.0184179678797753 |
GO:0031988 | membrane-bound vesicle | 0.0187157340953274 |
GO:0004322 | ferroxidase activity | 0.0194467036203606 |
GO:0004336 | galactosylceramidase activity | 0.0194467036203606 |
GO:0016724 | oxidoreductase activity, oxidizing metal ions, oxygen as acceptor | 0.0194467036203606 |
GO:0019955 | cytokine binding | 0.0199777085932645 |
GO:0050884 | neuromuscular process controlling posture | 0.0232752477158334 |
GO:0004563 | beta-N-acetylhexosaminidase activity | 0.0232752477158334 |
GO:0016999 | antibiotic metabolic process | 0.0232752477158334 |
GO:0006689 | ganglioside catabolic process | 0.0232752477158334 |
GO:0031410 | cytoplasmic vesicle | 0.0254486866919106 |
GO:0031982 | vesicle | 0.0254486866919106 |
GO:0016019 | peptidoglycan receptor activity | 0.0254486866919106 |
GO:0046479 | glycosphingolipid catabolic process | 0.0254486866919106 |
GO:0019961 | interferon binding | 0.0254486866919106 |
GO:0004904 | interferon receptor activity | 0.0254486866919106 |
GO:0004348 | glucosylceramidase activity | 0.0254486866919106 |
GO:0017144 | drug metabolic process | 0.0299925093723461 |
GO:0016722 | oxidoreductase activity, oxidizing metal ions | 0.0337936779888668 |
GO:0019377 | glycolipid catabolic process | 0.0337936779888668 |
GO:0004519 | endonuclease activity | 0.0342058332122311 |
GO:0019915 | sequestering of lipid | 0.0350444381671572 |
GO:0001573 | ganglioside metabolic process | 0.0350444381671572 |
GO:0007628 | adult walking behavior | 0.0350444381671572 |
GO:0019864 | IgG binding | 0.0350444381671572 |
GO:0016600 | flotillin complex | 0.0350444381671572 |
GO:0042834 | peptidoglycan binding | 0.0371269217025048 |
GO:0004767 | sphingomyelin phosphodiesterase activity | 0.0371269217025048 |
GO:0030547 | receptor inhibitor activity | 0.0371269217025048 |
GO:0048019 | receptor antagonist activity | 0.0371269217025048 |
GO:0015988 | energy coupled proton transport, against electrochemical gradient | 0.0395199232746048 |
GO:0046677 | response to antibiotic | 0.0395199232746048 |
GO:0002237 | response to molecule of bacterial origin | 0.0395199232746048 |
GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.0417189232038694 |
GO:0030545 | receptor regulator activity | 0.0417189232038694 |
GO:0004565 | beta-galactosidase activity | 0.0417189232038694 |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | 0.0421027854628203 |
GO:0042088 | T-helper 1 type immune response | 0.0426526501935049 |
GO:0008329 | pattern recognition receptor activity | 0.0426526501935049 |
GO:0017040 | ceramidase activity | 0.0426526501935049 |
GO:0015925 | galactosidase activity | 0.0426526501935049 |
GO:0016812 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | 0.0450267385812422 |
GO:0051238 | sequestering of metal ion | 0.0450267385812422 |
GO:0051707 | response to other organism | 0.0450267385812422 |
GO:0008344 | adult locomotory behavior | 0.0468836779009948 |
GO:0009308 | amine metabolic process | 0.0468836779009948 |
GO:0005737 | cytoplasm | 0.0478754189442239 |
GO:0016798 | hydrolase activity, acting on glycosyl bonds | 0.0478757263869966 |
GO:0008395 | steroid hydroxylase activity | 0.0478757263869966 |
GO:0030149 | sphingolipid catabolic process | 0.0478757263869966 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.34e-91 | 98 |
blood island | 8.34e-91 | 98 |
hemolymphoid system | 4.42e-85 | 108 |
bone marrow | 3.07e-74 | 76 |
immune system | 3.12e-70 | 93 |
bone element | 1.82e-67 | 82 |
skeletal element | 7.75e-60 | 90 |
skeletal system | 6.00e-54 | 100 |
lateral plate mesoderm | 1.78e-38 | 203 |
musculoskeletal system | 5.57e-26 | 167 |
mesoderm | 1.61e-20 | 315 |
mesoderm-derived structure | 1.61e-20 | 315 |
presumptive mesoderm | 1.61e-20 | 315 |
blood | 3.71e-14 | 15 |
haemolymphatic fluid | 3.71e-14 | 15 |
organism substance | 3.71e-14 | 15 |
adult organism | 3.83e-11 | 114 |
germ layer | 5.16e-09 | 560 |
germ layer / neural crest | 5.16e-09 | 560 |
embryonic tissue | 5.16e-09 | 560 |
presumptive structure | 5.16e-09 | 560 |
germ layer / neural crest derived structure | 5.16e-09 | 560 |
epiblast (generic) | 5.16e-09 | 560 |
embryonic structure | 8.94e-09 | 564 |
developing anatomical structure | 3.03e-08 | 581 |
organ | 5.26e-08 | 503 |
connective tissue | 8.34e-08 | 371 |
anatomical system | 8.68e-08 | 624 |
anatomical group | 9.83e-08 | 625 |
embryo | 1.24e-07 | 592 |
multi-cellular organism | 4.73e-07 | 656 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 1.03761e-05 |
MA0004.1 | 0.676232 |
MA0006.1 | 0.0848479 |
MA0007.1 | 1.0459 |
MA0009.1 | 0.237708 |
MA0014.1 | 4.30404e-07 |
MA0017.1 | 0.832217 |
MA0019.1 | 0.56671 |
MA0024.1 | 0.14428 |
MA0025.1 | 0.12256 |
MA0027.1 | 1.36139 |
MA0028.1 | 0.0302684 |
MA0029.1 | 0.159705 |
MA0030.1 | 0.347412 |
MA0031.1 | 0.477633 |
MA0038.1 | 0.43443 |
MA0040.1 | 0.16454 |
MA0041.1 | 0.00646524 |
MA0042.1 | 0.287406 |
MA0043.1 | 0.238025 |
MA0046.1 | 0.0633926 |
MA0048.1 | 0.0203157 |
MA0050.1 | 0.437758 |
MA0051.1 | 0.257183 |
MA0052.1 | 0.167779 |
MA0055.1 | 0.354433 |
MA0056.1 | 0 |
MA0057.1 | 0.0590709 |
MA0058.1 | 0.121645 |
MA0059.1 | 0.119672 |
MA0060.1 | 5.3053e-05 |
MA0061.1 | 0.000709978 |
MA0063.1 | 0 |
MA0066.1 | 0.265947 |
MA0067.1 | 0.64134 |
MA0068.1 | 0.146451 |
MA0069.1 | 0.0621016 |
MA0070.1 | 0.0584404 |
MA0071.1 | 0.197001 |
MA0072.1 | 0.456989 |
MA0073.1 | 0.511602 |
MA0074.1 | 0.420844 |
MA0076.1 | 0.0400475 |
MA0077.1 | 0.200968 |
MA0078.1 | 0.276689 |
MA0081.1 | 0.0650822 |
MA0083.1 | 0.24529 |
MA0084.1 | 0.356643 |
MA0087.1 | 0.0562341 |
MA0088.1 | 0.0351192 |
MA0089.1 | 0 |
MA0090.1 | 0.410004 |
MA0091.1 | 0.920198 |
MA0092.1 | 0.363937 |
MA0093.1 | 0.77613 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.473378 |
MA0101.1 | 0.0516249 |
MA0103.1 | 0.284346 |
MA0105.1 | 0.00819223 |
MA0106.1 | 0.0299832 |
MA0107.1 | 0.0105869 |
MA0108.2 | 0.101925 |
MA0109.1 | 0 |
MA0111.1 | 1.08154 |
MA0113.1 | 0.0351152 |
MA0114.1 | 0.441909 |
MA0115.1 | 0.179567 |
MA0116.1 | 0.789801 |
MA0117.1 | 0.276777 |
MA0119.1 | 0.023351 |
MA0122.1 | 0.305253 |
MA0124.1 | 0.156374 |
MA0125.1 | 0.114106 |
MA0130.1 | 0 |
MA0131.1 | 0.152822 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.0781646 |
MA0136.1 | 0.278704 |
MA0139.1 | 0.0385381 |
MA0140.1 | 0.0403472 |
MA0141.1 | 0.77412 |
MA0142.1 | 0.0844859 |
MA0143.1 | 0.606732 |
MA0144.1 | 0.0495517 |
MA0145.1 | 0.192415 |
MA0146.1 | 0.00256447 |
MA0147.1 | 0.286979 |
MA0148.1 | 0.246639 |
MA0149.1 | 0.0103388 |
MA0062.2 | 0.028084 |
MA0035.2 | 0.326087 |
MA0039.2 | 0.00594331 |
MA0138.2 | 0.00983517 |
MA0002.2 | 0.245079 |
MA0137.2 | 0.118836 |
MA0104.2 | 0.0398473 |
MA0047.2 | 0.17786 |
MA0112.2 | 1.07127 |
MA0065.2 | 2.14235 |
MA0150.1 | 0.388966 |
MA0151.1 | 0 |
MA0152.1 | 1.0131 |
MA0153.1 | 0.106423 |
MA0154.1 | 0.0681356 |
MA0155.1 | 0.155689 |
MA0156.1 | 0.564858 |
MA0157.1 | 0.357401 |
MA0158.1 | 0 |
MA0159.1 | 1.42972 |
MA0160.1 | 1.78446 |
MA0161.1 | 0 |
MA0162.1 | 6.69887e-05 |
MA0163.1 | 0.0160493 |
MA0164.1 | 0.112493 |
MA0080.2 | 0.455117 |
MA0018.2 | 0.196276 |
MA0099.2 | 0.344606 |
MA0079.2 | 6.26316e-05 |
MA0102.2 | 0.385033 |
MA0258.1 | 1.86006 |
MA0259.1 | 0.155653 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
BCL11A#53335 | 10 | 2.34458306641381 | 0.0107510858275236 | 0.0396788696282684 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data