FFCP PHASE1:Hg19::chr6:31323216..31323285,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3107,3106 | |EntrezGene=3107,3106 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4933,4932 | |HGNC=4933,4932 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=83bp_to_uc003ntb.2,uc003nti.1,uc010jsm.1,uc011dnk.1_5end | |association_with_transcript=83bp_to_uc003ntb.2,uc003nti.1,uc010jsm.1,uc011dnk.1_5end | ||
|cluster_id=chr6:31323216..31323285,- | |||
|coexpression_cluster_id=C500 | |coexpression_cluster_id=C500 | ||
|description=CAGE_peak_3_at_HLA-C_5end,CAGE_peak_5_at_HLA-B_5end | |description=CAGE_peak_3_at_HLA-C_5end,CAGE_peak_5_at_HLA-B_5end | ||
|id=chr6:31323216..31323285,- | |id=chr6:31323216..31323285,- | ||
|ontology_enrichment_celltype=CL:0000738!8.55e-47!140;CL:0002087!1.65e-42!119;CL:0002031!2.23e-37!124;CL:0000988!2.61e-32!182;CL:0000037!3.51e-32!172;CL:0000566!3.51e-32!172;CL:0002032!1.81e-30!165;CL:0000837!1.81e-30!165;CL:0000766!2.67e-26!76;CL:0002009!9.59e-26!65;CL:0002194!5.00e-25!63;CL:0000576!5.00e-25!63;CL:0000040!5.00e-25!63;CL:0000559!5.00e-25!63;CL:0002057!4.66e-24!42;CL:0000557!1.08e-21!71;CL:0000860!1.22e-21!45;CL:0000839!1.70e-20!70;CL:0000542!1.61e-15!53;CL:0000051!1.61e-15!53;CL:0000838!1.73e-15!52;CL:0000763!4.65e-15!112;CL:0000049!4.65e-15!112;CL:0000134!5.41e-12!358;CL:0002320!5.81e-11!365;CL:0000048!9.19e-10!430;CL:0000791!1.37e-09!18;CL:0000789!1.37e-09!18;CL:0002420!1.37e-09!18;CL:0002419!1.37e-09!18;CL:0000790!1.37e-09!18;CL:0000084!5.17e-09!25;CL:0000827!5.17e-09!25;CL:0000723!7.44e-09!436;CL:0000034!1.61e-08!444;CL:0000219!6.33e-07!390;CL:0000625!9.80e-07!11 | |ontology_enrichment_celltype=CL:0000738!8.55e-47!140;CL:0002087!1.65e-42!119;CL:0002031!2.23e-37!124;CL:0000988!2.61e-32!182;CL:0000037!3.51e-32!172;CL:0000566!3.51e-32!172;CL:0002032!1.81e-30!165;CL:0000837!1.81e-30!165;CL:0000766!2.67e-26!76;CL:0002009!9.59e-26!65;CL:0002194!5.00e-25!63;CL:0000576!5.00e-25!63;CL:0000040!5.00e-25!63;CL:0000559!5.00e-25!63;CL:0002057!4.66e-24!42;CL:0000557!1.08e-21!71;CL:0000860!1.22e-21!45;CL:0000839!1.70e-20!70;CL:0000542!1.61e-15!53;CL:0000051!1.61e-15!53;CL:0000838!1.73e-15!52;CL:0000763!4.65e-15!112;CL:0000049!4.65e-15!112;CL:0000134!5.41e-12!358;CL:0002320!5.81e-11!365;CL:0000048!9.19e-10!430;CL:0000791!1.37e-09!18;CL:0000789!1.37e-09!18;CL:0002420!1.37e-09!18;CL:0002419!1.37e-09!18;CL:0000790!1.37e-09!18;CL:0000084!5.17e-09!25;CL:0000827!5.17e-09!25;CL:0000723!7.44e-09!436;CL:0000034!1.61e-08!444;CL:0000219!6.33e-07!390;CL:0000625!9.80e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.70e-24;33!CL:0002057;4.70e-24;33!CL:0000473;6.24e-24;39!CL:0000234;6.24e-24;39!CL:0000576;1.74e-19;48!CL:0002087;1.81e-15;104!CL:0000766;2.70e-15;69!CL:0000738;4.98e-13;136!CL:0000791;4.51e-12;18!CL:0000789;4.51e-12;18!CL:0002419;4.51e-12;18!CL:0000542;4.90e-11;53!CL:0000084;1.00e-10;25!CL:0000988;1.48e-08;177!CL:0000625;1.85e-08;11!CL:0000219;5.07e-08;193!CL:0000451;1.36e-07;10!CL:0000094;2.76e-07;8!CL:0000945;5.09e-07;24!CL:0000763;7.12e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.37e-61,136;CL:0002087,1.23e-55,115;CL:0002031,6.22e-49,120;CL:0000037,1.99e-46,168;CL:0000988,4.93e-46,177;CL:0002032,1.05e-43,161;CL:0000837,1.05e-43,161;CL:0000766,3.58e-36,72;CL:0000473,4.04e-36,48;CL:0000234,4.04e-36,48;CL:0002009,7.07e-36,61;CL:0002194,6.22e-35,59;CL:0000576,6.22e-35,59;CL:0000040,6.22e-35,59;CL:0000559,6.22e-35,59;CL:0000860,1.94e-31,42;CL:0002057,1.94e-31,42;CL:0000557,2.56e-30,67;CL:0000839,1.51e-28,66;CL:0000763,6.20e-24,108;CL:0000049,6.20e-24,108;CL:0000542,2.79e-18,53;CL:0000051,2.79e-18,53;CL:0000838,3.17e-18,52;CL:0000134,2.69e-15,354;CL:0002320,1.79e-14,361;CL:0000791,3.25e-12,18;CL:0000789,3.25e-12,18;CL:0002420,3.25e-12,18;CL:0002419,3.25e-12,18;CL:0000790,3.25e-12,18;CL:0000084,8.89e-11,25;CL:0000827,8.89e-11,25;CL:0000048,1.38e-10,427;CL:0000219,3.85e-10,386;CL:0000723,8.86e-10,433;CL:0000034,1.90e-09,441;CL:0000625,1.96e-08,11;CL:0000451,1.57e-07,10;CL:0000094,2.50e-07,8;CL:0000945,4.17e-07,24;CL:0000826,4.17e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.20e-22;42!CL:0000790;4.51e-12;18!CL:0000051;4.90e-11;53!CL:0000049;5.70e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.78e-28!102;UBERON:0003061!5.78e-28!102;UBERON:0002193!8.92e-28!112;UBERON:0002371!3.22e-20!80;UBERON:0001474!4.13e-18!86;UBERON:0002405!1.47e-16!115;UBERON:0004765!1.85e-14!101;UBERON:0001434!1.85e-14!101;UBERON:0002384!3.68e-11!375;UBERON:0003081!1.54e-10!216;UBERON:0002204!3.17e-09!167;UBERON:0000178!2.75e-08!15;UBERON:0000179!2.75e-08!15;UBERON:0000463!2.75e-08!15 | |ontology_enrichment_uberon=UBERON:0002390!5.78e-28!102;UBERON:0003061!5.78e-28!102;UBERON:0002193!8.92e-28!112;UBERON:0002371!3.22e-20!80;UBERON:0001474!4.13e-18!86;UBERON:0002405!1.47e-16!115;UBERON:0004765!1.85e-14!101;UBERON:0001434!1.85e-14!101;UBERON:0002384!3.68e-11!375;UBERON:0003081!1.54e-10!216;UBERON:0002204!3.17e-09!167;UBERON:0000178!2.75e-08!15;UBERON:0000179!2.75e-08!15;UBERON:0000463!2.75e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.16e-10;15!UBERON:0000179;2.16e-10;15!UBERON:0000463;2.16e-10;15 | |||
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| ||
|short_description=p3@HLA-C,p5@HLA-B | |short_description=p3@HLA-C,p5@HLA-B | ||
}} | }} |
Latest revision as of 20:18, 17 September 2015
Short description: | p3@HLA-C, p5@HLA-B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HLA-C_5end, CAGE_peak_5_at_HLA-B_5end |
Coexpression cluster: | C500_Neutrophils_Monocytederived_blood_CD14_Eosinophils_lung_mixed |
Association with transcript: | 83bp_to_uc003ntb.2, uc003nti.1, uc010jsm.1, uc011dnk.1_5end |
EntrezGene: | 3107,3106 |
HGNC: | 4932&submit=Submit 4933, 4932 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.30e-37 | 98 |
blood island | 1.30e-37 | 98 |
hemolymphoid system | 7.88e-36 | 108 |
bone marrow | 9.76e-29 | 76 |
immune system | 9.65e-27 | 93 |
bone element | 1.41e-25 | 82 |
skeletal element | 5.33e-21 | 90 |
skeletal system | 3.13e-19 | 100 |
lateral plate mesoderm | 7.50e-15 | 203 |
connective tissue | 1.38e-14 | 371 |
blood | 1.74e-10 | 15 |
haemolymphatic fluid | 1.74e-10 | 15 |
organism substance | 1.74e-10 | 15 |
musculoskeletal system | 1.46e-09 | 167 |