FFCP PHASE1:Hg19::chr7:18535562..18535606,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9734 | |EntrezGene=9734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14065 | |HGNC=14065 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=178bp_to_ENST00000461409_5end | |association_with_transcript=178bp_to_ENST00000461409_5end | ||
|cluster_id=chr7:18535562..18535606,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_17_at_HDAC9_5end | |description=CAGE_peak_17_at_HDAC9_5end | ||
|id=chr7:18535562..18535606,+ | |id=chr7:18535562..18535606,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.71e-10!25;CL:0000540!1.62e-07!6;CL:0000031!1.62e-07!6;CL:0000404!1.62e-07!6;CL:0000047!1.79e-07!8 | |ontology_enrichment_celltype=CL:0002319!1.71e-10!25;CL:0000540!1.62e-07!6;CL:0000031!1.62e-07!6;CL:0000404!1.62e-07!6;CL:0000047!1.79e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.28e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.87e-11,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;7.95e-10;1!DOID:4549;7.95e-10;1!DOID:5861;7.95e-10;1!DOID:6496;7.95e-10;1!DOID:6193;2.44e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,7.98e-10,1;DOID:4549,7.98e-10,1;DOID:5861,7.98e-10,1;DOID:6496,7.98e-10,1;DOID:6193,3.25e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.19e-32!94;UBERON:0001016!1.19e-32!94;UBERON:0005743!1.34e-32!86;UBERON:0001017!4.87e-31!82;UBERON:0002780!4.42e-29!41;UBERON:0001890!4.42e-29!41;UBERON:0006240!4.42e-29!41;UBERON:0001049!2.81e-28!57;UBERON:0005068!2.81e-28!57;UBERON:0006241!2.81e-28!57;UBERON:0007135!2.81e-28!57;UBERON:0003080!4.21e-28!42;UBERON:0001869!1.08e-26!32;UBERON:0002346!1.73e-26!90;UBERON:0001893!1.89e-26!34;UBERON:0000955!1.15e-25!69;UBERON:0006238!1.15e-25!69;UBERON:0003075!1.27e-25!86;UBERON:0007284!1.27e-25!86;UBERON:0002616!1.88e-25!59;UBERON:0002791!2.48e-25!33;UBERON:0002020!2.76e-24!34;UBERON:0003528!2.76e-24!34;UBERON:0003056!3.68e-24!61;UBERON:0000956!3.18e-19!25;UBERON:0000203!3.18e-19!25;UBERON:0000924!4.87e-19!173;UBERON:0006601!4.87e-19!173;UBERON:0004121!3.56e-18!169;UBERON:0007023!3.12e-17!115;UBERON:0002619!8.91e-16!22;UBERON:0000033!7.51e-15!123;UBERON:0000153!9.30e-15!129;UBERON:0007811!9.30e-15!129;UBERON:0001950!9.24e-14!20;UBERON:0002420!7.55e-09!9;UBERON:0007245!7.55e-09!9;UBERON:0010009!7.55e-09!9;UBERON:0010011!7.55e-09!9;UBERON:0000454!7.55e-09!9;UBERON:0000349!4.71e-07!5;UBERON:0001871!9.91e-07!7;UBERON:0009663!9.95e-07!7 | |ontology_enrichment_uberon=UBERON:0000073!1.19e-32!94;UBERON:0001016!1.19e-32!94;UBERON:0005743!1.34e-32!86;UBERON:0001017!4.87e-31!82;UBERON:0002780!4.42e-29!41;UBERON:0001890!4.42e-29!41;UBERON:0006240!4.42e-29!41;UBERON:0001049!2.81e-28!57;UBERON:0005068!2.81e-28!57;UBERON:0006241!2.81e-28!57;UBERON:0007135!2.81e-28!57;UBERON:0003080!4.21e-28!42;UBERON:0001869!1.08e-26!32;UBERON:0002346!1.73e-26!90;UBERON:0001893!1.89e-26!34;UBERON:0000955!1.15e-25!69;UBERON:0006238!1.15e-25!69;UBERON:0003075!1.27e-25!86;UBERON:0007284!1.27e-25!86;UBERON:0002616!1.88e-25!59;UBERON:0002791!2.48e-25!33;UBERON:0002020!2.76e-24!34;UBERON:0003528!2.76e-24!34;UBERON:0003056!3.68e-24!61;UBERON:0000956!3.18e-19!25;UBERON:0000203!3.18e-19!25;UBERON:0000924!4.87e-19!173;UBERON:0006601!4.87e-19!173;UBERON:0004121!3.56e-18!169;UBERON:0007023!3.12e-17!115;UBERON:0002619!8.91e-16!22;UBERON:0000033!7.51e-15!123;UBERON:0000153!9.30e-15!129;UBERON:0007811!9.30e-15!129;UBERON:0001950!9.24e-14!20;UBERON:0002420!7.55e-09!9;UBERON:0007245!7.55e-09!9;UBERON:0010009!7.55e-09!9;UBERON:0010011!7.55e-09!9;UBERON:0000454!7.55e-09!9;UBERON:0000349!4.71e-07!5;UBERON:0001871!9.91e-07!7;UBERON:0009663!9.95e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.00e-17;34!UBERON:0001869;2.27e-17;32!UBERON:0002791;2.56e-17;32!UBERON:0003528;4.40e-16;34!UBERON:0002020;4.40e-16;34!UBERON:0000956;2.27e-14;25!UBERON:0000203;2.27e-14;25!UBERON:0002780;3.04e-12;41!UBERON:0001890;3.04e-12;41!UBERON:0005383;1.28e-11;3!UBERON:0005382;1.28e-11;3!UBERON:0001874;2.44e-09;1!UBERON:0000073;5.91e-09;53!UBERON:0002616;5.91e-09;53!UBERON:0000369;6.20e-09;4!UBERON:0002435;6.20e-09;4!UBERON:0000204;6.20e-09;4!UBERON:0002619;1.28e-08;22!UBERON:0000955;7.41e-08;68!UBERON:0001872;2.59e-07;5!UBERON:0001017;9.53e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002791,2.32e-18,32;UBERON:0001869,2.32e-18,32;UBERON:0003528,3.08e-17,34;UBERON:0002020,3.08e-17,34;UBERON:0001893,3.08e-17,34;UBERON:0000956,1.67e-14,25;UBERON:0000203,1.67e-14,25;UBERON:0002780,3.81e-14,41;UBERON:0001890,3.81e-14,41;UBERON:0003080,3.81e-14,41;UBERON:0006240,3.81e-14,41;UBERON:0000073,2.81e-13,53;UBERON:0002616,2.81e-13,53;UBERON:0001049,1.70e-12,56;UBERON:0005068,1.70e-12,56;UBERON:0006241,1.70e-12,56;UBERON:0007135,1.70e-12,56;UBERON:0001017,7.22e-12,81;UBERON:0005383,2.19e-11,3;UBERON:0005382,2.19e-11,3;UBERON:0001016,1.67e-10,89;UBERON:0000955,7.03e-10,68;UBERON:0006238,7.03e-10,68;UBERON:0002346,2.40e-09,86;UBERON:0003056,3.73e-09,61;UBERON:0001874,4.50e-09,1;UBERON:0002619,8.89e-09,22;UBERON:0000369,9.25e-09,4;UBERON:0002435,9.25e-09,4;UBERON:0000204,9.25e-09,4;UBERON:0010082,9.25e-09,4;UBERON:0003075,4.39e-08,82;UBERON:0007284,4.39e-08,82;UBERON:0001872,1.66e-07,5 | |||
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| ||
|short_description=p17@HDAC9 | |short_description=p17@HDAC9 | ||
}} | }} |
Latest revision as of 14:15, 17 September 2015
Short description: | p17@HDAC9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_HDAC9_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 178bp_to_ENST00000461409_5end |
EntrezGene: | HDAC9 |
HGNC: | 14065 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.87e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
regional part of telencephalon | 2.32e-18 | 32 |
cerebral hemisphere | 2.32e-18 | 32 |
brain grey matter | 3.08e-17 | 34 |
gray matter | 3.08e-17 | 34 |
telencephalon | 3.08e-17 | 34 |
cerebral cortex | 1.67e-14 | 25 |
pallium | 1.67e-14 | 25 |
regional part of forebrain | 3.81e-14 | 41 |
forebrain | 3.81e-14 | 41 |
anterior neural tube | 3.81e-14 | 41 |
future forebrain | 3.81e-14 | 41 |
regional part of nervous system | 2.81e-13 | 53 |
regional part of brain | 2.81e-13 | 53 |
neural tube | 1.70e-12 | 56 |
neural rod | 1.70e-12 | 56 |
future spinal cord | 1.70e-12 | 56 |
neural keel | 1.70e-12 | 56 |
central nervous system | 7.22e-12 | 81 |
caudate-putamen | 2.19e-11 | 3 |
dorsal striatum | 2.19e-11 | 3 |
nervous system | 1.67e-10 | 89 |
brain | 7.03e-10 | 68 |
future brain | 7.03e-10 | 68 |
neurectoderm | 2.40e-09 | 86 |
pre-chordal neural plate | 3.73e-09 | 61 |
putamen | 4.50e-09 | 1 |
regional part of cerebral cortex | 8.89e-09 | 22 |
corpus striatum | 9.25e-09 | 4 |
striatum | 9.25e-09 | 4 |
ventral part of telencephalon | 9.25e-09 | 4 |
future corpus striatum | 9.25e-09 | 4 |
neural plate | 4.39e-08 | 82 |
presumptive neural plate | 4.39e-08 | 82 |
parietal lobe | 1.66e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 7.98e-10 | 1 |
extraosseous chondrosarcoma | 7.98e-10 | 1 |
myxoid chondrosarcoma | 7.98e-10 | 1 |
extraskeletal myxoid chondrosarcoma | 7.98e-10 | 1 |
epithelioid sarcoma | 3.25e-09 | 1 |