FF:11686-122I3: Difference between revisions

Latest revision as of 18:14, 4 June 2020

Name:	Cardiac Myocyte, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12571
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	NA
sex	NA
age	NA
cell type	cardiac muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	6755
catalog number	SC6205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005296

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12571		CAGE		DRX008200		DRR009072

Accession ID Hg19

Library id		BAM		CTSS
CNhs12571		DRZ000497		DRZ001882

Accession ID Hg38

Library id		BAM		CTSS
CNhs12571		DRZ011847		DRZ013232

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.204
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.1
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.215
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.425
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0408
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.197
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.556
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0989
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.117
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.118
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0989
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0523
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0923
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0316
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.745
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.631
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0451
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0503
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0523
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.179
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.319
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.142
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.404
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.446
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.581
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12571

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.121
MA0003.1	MA0003.1	0.484
MA0004.1	MA0004.1	0.0411
MA0006.1	MA0006.1	0.196
MA0007.1	MA0007.1	0.0432
MA0009.1	MA0009.1	0.504
MA0014.1	MA0014.1	0.739
MA0017.1	MA0017.1	0.948
MA0018.2	MA0018.2	4.32127e-5
MA0019.1	MA0019.1	0.937
MA0024.1	MA0024.1	0.879
MA0025.1	MA0025.1	0.363
MA0027.1	MA0027.1	0.928
MA0028.1	MA0028.1	0.061
MA0029.1	MA0029.1	0.354
MA0030.1	MA0030.1	0.172
MA0031.1	MA0031.1	0.268
MA0035.2	MA0035.2	0.00459
MA0038.1	MA0038.1	0.769
MA0039.2	MA0039.2	0.406
MA0040.1	MA0040.1	0.319
MA0041.1	MA0041.1	0.3
MA0042.1	MA0042.1	0.258
MA0043.1	MA0043.1	0.102
MA0046.1	MA0046.1	0.92
MA0047.2	MA0047.2	0.81
MA0048.1	MA0048.1	0.627
MA0050.1	MA0050.1	4.30599e-4
MA0051.1	MA0051.1	0.794
MA0052.1	MA0052.1	0.613
MA0055.1	MA0055.1	0.654
MA0057.1	MA0057.1	0.317
MA0058.1	MA0058.1	0.00207
MA0059.1	MA0059.1	0.453
MA0060.1	MA0060.1	0.0873
MA0061.1	MA0061.1	0.0837
MA0062.2	MA0062.2	1.2285e-7
MA0065.2	MA0065.2	0.476
MA0066.1	MA0066.1	0.326
MA0067.1	MA0067.1	0.00461
MA0068.1	MA0068.1	0.731
MA0069.1	MA0069.1	0.913
MA0070.1	MA0070.1	0.682
MA0071.1	MA0071.1	0.606
MA0072.1	MA0072.1	0.965
MA0073.1	MA0073.1	0.992
MA0074.1	MA0074.1	0.879
MA0076.1	MA0076.1	0.00139
MA0077.1	MA0077.1	0.39
MA0078.1	MA0078.1	0.108
MA0079.2	MA0079.2	0.914
MA0080.2	MA0080.2	8.16256e-7
MA0081.1	MA0081.1	0.0574
MA0083.1	MA0083.1	0.00676
MA0084.1	MA0084.1	0.128
MA0087.1	MA0087.1	0.174
MA0088.1	MA0088.1	0.647
MA0090.1	MA0090.1	2.61168e-7
MA0091.1	MA0091.1	0.0903
MA0092.1	MA0092.1	0.00975
MA0093.1	MA0093.1	0.0419
MA0099.2	MA0099.2	0.00488
MA0100.1	MA0100.1	0.533
MA0101.1	MA0101.1	0.241
MA0102.2	MA0102.2	0.471
MA0103.1	MA0103.1	0.00179
MA0104.2	MA0104.2	0.128
MA0105.1	MA0105.1	0.0795
MA0106.1	MA0106.1	0.593
MA0107.1	MA0107.1	0.235
MA0108.2	MA0108.2	4.35098e-12
MA0111.1	MA0111.1	0.333
MA0112.2	MA0112.2	0.228
MA0113.1	MA0113.1	0.0375
MA0114.1	MA0114.1	0.718
MA0115.1	MA0115.1	0.0598
MA0116.1	MA0116.1	0.966
MA0117.1	MA0117.1	0.345
MA0119.1	MA0119.1	0.119
MA0122.1	MA0122.1	0.529
MA0124.1	MA0124.1	0.226
MA0125.1	MA0125.1	0.648
MA0131.1	MA0131.1	0.432
MA0135.1	MA0135.1	0.255
MA0136.1	MA0136.1	2.30798e-8
MA0137.2	MA0137.2	0.33
MA0138.2	MA0138.2	0.316
MA0139.1	MA0139.1	0.41
MA0140.1	MA0140.1	9.19531e-4
MA0141.1	MA0141.1	0.255
MA0142.1	MA0142.1	0.355
MA0143.1	MA0143.1	0.467
MA0144.1	MA0144.1	0.175
MA0145.1	MA0145.1	0.192
MA0146.1	MA0146.1	0.696
MA0147.1	MA0147.1	0.242
MA0148.1	MA0148.1	0.847
MA0149.1	MA0149.1	0.556
MA0150.1	MA0150.1	0.0285
MA0152.1	MA0152.1	0.0246
MA0153.1	MA0153.1	0.712
MA0154.1	MA0154.1	0.865
MA0155.1	MA0155.1	0.537
MA0156.1	MA0156.1	5.40785e-5
MA0157.1	MA0157.1	0.705
MA0159.1	MA0159.1	0.69
MA0160.1	MA0160.1	0.77
MA0162.1	MA0162.1	0.151
MA0163.1	MA0163.1	0.836
MA0164.1	MA0164.1	0.173
MA0258.1	MA0258.1	0.825
MA0259.1	MA0259.1	0.366

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12571

Novel motif	Logo	P-value
1	1	0.584
10	10	0.00917
100	100	0.859
101	101	0.751
102	102	0.165
103	103	0.433
104	104	0.298
105	105	0.596
106	106	0.4
107	107	0.0433
108	108	0.622
109	109	0.855
11	11	0.887
110	110	0.949
111	111	0.0378
112	112	0.467
113	113	0.0782
114	114	0.406
115	115	0.815
116	116	0.264
117	117	0.0122
118	118	0.801
119	119	0.682
12	12	0.693
120	120	0.59
121	121	0.777
122	122	0.964
123	123	2.43847e-4
124	124	0.985
125	125	0.519
126	126	0.859
127	127	0.775
128	128	0.304
129	129	0.722
13	13	0.584
130	130	0.0397
131	131	0.183
132	132	0.343
133	133	0.933
134	134	0.118
135	135	0.138
136	136	0.695
137	137	0.162
138	138	0.144
139	139	0.0691
14	14	0.254
140	140	0.267
141	141	0.876
142	142	0.872
143	143	0.623
144	144	0.769
145	145	0.899
146	146	0.0945
147	147	0.437
148	148	0.43
149	149	0.00471
15	15	0.963
150	150	0.15
151	151	0.596
152	152	0.128
153	153	0.651
154	154	0.0839
155	155	0.0183
156	156	0.806
157	157	0.533
158	158	7.41707e-4
159	159	0.296
16	16	0.175
160	160	0.0982
161	161	0.854
162	162	0.933
163	163	0.448
164	164	0.94
165	165	0.0523
166	166	0.116
167	167	0.092
168	168	0.461
169	169	0.148
17	17	0.932
18	18	0.24
19	19	0.0857
2	2	0.24
20	20	0.329
21	21	0.693
22	22	0.383
23	23	0.587
24	24	0.793
25	25	0.207
26	26	0.75
27	27	0.655
28	28	0.199
29	29	0.603
3	3	0.837
30	30	0.114
31	31	0.419
32	32	1.67756e-9
33	33	0.505
34	34	0.312
35	35	0.208
36	36	0.468
37	37	0.848
38	38	0.527
39	39	0.124
4	4	0.649
40	40	0.615
41	41	0.831
42	42	0.699
43	43	0.679
44	44	0.943
45	45	0.348
46	46	0.839
47	47	0.662
48	48	0.977
49	49	0.725
5	5	0.424
50	50	0.424
51	51	0.873
52	52	0.624
53	53	0.373
54	54	0.991
55	55	0.465
56	56	0.811
57	57	0.553
58	58	0.264
59	59	0.37
6	6	0.773
60	60	0.651
61	61	0.681
62	62	0.436
63	63	0.624
64	64	0.742
65	65	0.811
66	66	0.347
67	67	0.562
68	68	0.842
69	69	0.957
7	7	0.871
70	70	0.274
71	71	0.324
72	72	0.844
73	73	0.277
74	74	0.665
75	75	0.471
76	76	0.108
77	77	0.102
78	78	0.573
79	79	0.196
8	8	0.225
80	80	0.399
81	81	0.363
82	82	0.223
83	83	0.0685
84	84	0.293
85	85	0.182
86	86	0.27
87	87	0.0812
88	88	0.482
89	89	0.135
9	9	0.711
90	90	0.716
91	91	0.861
92	92	0.493
93	93	0.534
94	94	0.849
95	95	0.883
96	96	0.51
97	97	0.398
98	98	0.15
99	99	0.00419

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12571

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000118 human cardiac myocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000118 (human cardiac myocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0001134,UBERON:0000948,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0003103,UBERON:0005291,UBERON:0002036,UBERON:0002385,UBERON:0000486,UBERON:0003104,UBERON:0000914,UBERON:0005256,UBERON:0001048,UBERON:0006598,UBERON:0001015,UBERON:0002532,UBERON:0002329,UBERON:0002204,UBERON:0004535,UBERON:0000383,UBERON:0005498,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0003082,UBERON:0004872,UBERON:0003084,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285,UBERON:0007005,UBERON:0004139,UBERON:0004291
+|DRA_sample_Accession=CAGE@SAMD00005296
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000211,CL:0000056,CL:0000255,CL:0002494,CL:0000737,CL:0000222,CL:0000746,CL:0000355,CL:0000513
+|accession_numbers=CAGE;DRX008200;DRR009072;DRZ000497;DRZ001882;DRZ011847;DRZ013232
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000118
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.78!58.82!TCF21;;chr18:19749386..19749404,+!p2@GATA6!1.77!80.68!GATA6;;chr8:11561684..11561751,+!p1@GATA4!1.72!51.02!GATA4;;chr7:35293685..35293718,-!p1@TBX20!1.62!40.53!TBX20;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.47!28.77!PEG3;;chr5:92918919..92918942,+!p1@NR2F1!1.38!99.60!NR2F1;;chr6:19837592..19837621,+!p1@ID4!1.30!114.05!ID4;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.28!HAND2;;chr2:19558373..19558392,-!p1@OSR1!1.28!48.97!OSR1;;chr18:19749541..19749557,+!p1@GATA6!1.25!51.78!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.25!16.62!SOX17;;chr5:92919375..92919438,+!p6@NR2F1!1.20!15.98!NR2F1;;chr18:19749353..19749367,+!p4@GATA6!1.17!13.68!GATA6;;chr20:62680984..62680999,-!p1@SOX18!1.14!16.88!SOX18;;chr19:46801639..46801699,+!p1@HIF3A!1.14!12.66!HIF3A;;chr11:32457075..32457095,-!p1@WT1!1.13!12.53!WT1;;chr11:61520075..61520136,+!p1@C11orf9!1.10!24.68!C11orf9;;chr5:92918956..92918969,+!p4@NR2F1!1.09!12.53!NR2F1;;chr19:47523058..47523114,+!p1@NPAS1!1.04!9.97!NPAS1;;chrX:131545273..131545287,-!p17@MBNL3!1.04!9.85!MBNL3;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.87!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.01!24.81!HIC1;;chr1:40105299..40105326,-!p1@HEYL!1.00!9.08!HEYL;;chr16:8962202..8962222,-!p3@CARHSP1!0.99!15.98!CARHSP1;;chr6:85474299..85474324,-!p1@TBX18!0.99!15.85!TBX18;;chr3:25469724..25469773,+!p1@RARB!0.96!12.02!RARB;;chr18:53068911..53068935,-!p4@TCF4!0.94!8.69!TCF4;;chr1:8938709..8938720,-!p3@ENO1!0.93!381.16!ENO1;;chr19:45260775..45260838,+!p5@BCL3!0.93!9.85!BCL3;;chr5:92919100..92919135,+!p3@NR2F1!0.93!9.21!NR2F1;;chr14:62162285..62162296,+!p3@HIF1A!0.91!39.13!HIF1A;;chr17:70117153..70117174,+!p1@SOX9!0.88!70.71!SOX9;;chr14:62162258..62162269,+!p2@HIF1A!0.87!65.98!HIF1A;;chr1:170633348..170633399,+!p2@PRRX1!0.86!8.69!PRRX1;;chr15:66994561..66994597,+!p2@SMAD6!0.85!15.34!SMAD6;;chr4:174450089..174450153,-!p2@HAND2!0.85!6.01!HAND2;;chr15:66994663..66994680,+!p1@SMAD6!0.83!14.32!SMAD6;;chr15:66994615..66994630,+!p3@SMAD6!0.83!8.57!SMAD6;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.83!5.75!SEBOX;;chr20:61051039..61051057,-!p1@GATA5!0.83!5.75!GATA5;;chr16:8962853..8962878,-!p1@CARHSP1!0.79!329.63!CARHSP1;;chr1:197886461..197886558,+!p1@LHX9!0.78!4.99!LHX9;;chr20:30193083..30193098,+!p1@ID1!0.77!437.93!ID1;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.69!CREB3L1;;chr8:49833978..49833996,-!p1@SNAI2!0.75!106.13!SNAI2;;chr3:25470156..25470227,+!p2@RARB!0.75!4.60!RARB;;chr8:48650715..48650735,-!p1@CEBPD!0.74!644.17!CEBPD;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.60!TWIST2;;chr9:73029219..73029289,-!p2@KLF9!0.74!14.96!KLF9;;chr8:106330656..106330684,+!p1@ZFPM2!0.74!12.79!ZFPM2;;chr15:57511609..57511651,+!p2@TCF12!0.74!7.93!TCF12;;chr12:80084279..80084293,-!p8@PAWR!0.74!7.80!PAWR;;chr8:72756637..72756664,-!p3@MSC!0.74!5.24!MSC;;chr17:6926362..6926377,+!p1@BCL6B!0.74!4.48!BCL6B;;chr8:49833948..49833973,-!p2@SNAI2!0.72!30.43!SNAI2;;chr8:72756267..72756296,-!p4@MSC!0.71!6.39!MSC;;chr18:3450334..3450341,+!p15@TGIF1!0.71!5.50!TGIF1;;chr17:46132044..46132080,+!p4@NFE2L1!0.71!4.09!NFE2L1;;chr15:66994885..66994904,+!p7@SMAD6!0.70!3.96!SMAD6;;chrY:21906594..21906622,-!p1@KDM5D!0.70!3.96!KDM5D;;chrY:2803415..2803468,+!p1@ZFY!0.70!3.96!ZFY;;chr5:92918894..92918912,+!p2@NR2F1!0.69!14.06!NR2F1;;chr16:86600426..86600441,+!p1@FOXC2!0.69!10.61!FOXC2;;chr8:128749984..128750033,+!p4@MYC!0.68!15.47!MYC;;chr1:170632959..170632987,+!p4@PRRX1!0.68!4.22!PRRX1;;chr21:39870339..39870443,-!p1@ERG!0.68!3.84!ERG;;chr5:92919312..92919334,+!p13@NR2F1!0.68!3.84!NR2F1;;chr8:10588010..10588030,-!p1@SOX7!0.68!3.84!SOX7;;chr12:80085061..80085119,-!p6@PAWR!0.67!6.27!PAWR;;chr18:3450293..3450304,+!p4@TGIF1!0.66!9.72!TGIF1;;chr5:92919068..92919082,+!p5@NR2F1!0.66!4.35!NR2F1;;chrX:131545301..131545315,-!p22@MBNL3!0.66!3.58!MBNL3;;chr14:62162224..62162254,+!p1@HIF1A!0.65!597.63!HIF1A;;chr8:72756063..72756125,-!p1@MSC!0.65!7.67!MSC;;chr3:25469815..25469866,+!p3@RARB!0.65!3.45!RARB;;chr17:1958388..1958404,+!p1@HIC1!0.64!24.93!HIC1;;chr7:19157248..19157268,-!p1@TWIST1!0.64!10.48!TWIST1;;chr15:66994718..66994729,+!p4@SMAD6!0.64!3.32!SMAD6;;chr11:125034640..125034655,+!p1@PKNOX2!0.64!3.32!PKNOX2;;chr17:38498594..38498661,+!p2@RARA!0.63!12.40!RARA;;chr19:47922750..47922795,-!p1@MEIS3!0.63!5.75!MEIS3;;chr1:170632285..170632309,+!p1@PRRX1!0.63!3.84!PRRX1;;chr1:8938736..8938756,-!p1@ENO1!0.62!4146.97!ENO1;;chr1:23885981..23886002,-!p1@ID3!0.62!661.43!ID3;;chr6:126102292..126102329,+!p3@NCOA7!0.62!11.89!NCOA7;;chr8:72756667..72756736,-!p2@MSC!0.62!5.37!MSC;;chr10:131762504..131762555,-!p1@EBF3!0.62!3.20!EBF3;;chr8:128748308..128748324,+!p2@MYC!0.61!104.08!MYC;;chr10:63809013..63809041,+!p3@ARID5B!0.61!20.07!ARID5B;;chr2:85980951..85981004,+!p1@ATOH8!0.61!5.50!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.61!5.50!ATOH8;;chr8:37963466..37963506,+!p3@ASH2L!0.61!4.09!ASH2L;;chr8:72755987..72756002,-!p7@MSC!0.61!3.07!MSC;;chr19:50432453..50432468,+!p1@ATF5!0.60!203.94!ATF5;;chr12:800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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000737;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000513
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor3.CNhs12571.11686-122I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor3.CNhs12571.11686-122I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor3.CNhs12571.11686-122I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor3.CNhs12571.11686-122I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor3.CNhs12571.11686-122I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11686-122I3
-|is_a=EFO:0002091;;FF:0000002;;FF:0000118;;FF:0000210
+|is_a=EFO:0002091;;FF:0000118
+|is_obsolete=
+|library_id=CNhs12571
+|library_id_phase_based=2:CNhs12571
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11686
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11686
 |name=Cardiac Myocyte, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12571,LSID917,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=122
 |rna_catalog_number=SC6205
@@ Line 57: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=heart
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11686-122I3;search_select_hide=table117:FF:11686-122I3
 }}

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FF:11686-122I3: Difference between revisions

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Latest revision as of 18:14, 4 June 2020

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