FF:11323-117D9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005764 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005764 | ||
|accession_numbers=CAGE;DRX008207;DRR009079;DRZ000504;DRZ001889;DRZ011854;DRZ013239 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037213;DRR041579;DRZ007221 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001778,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001775,UBERON:0010230,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000064,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000067,CL:0005012,CL:0002304 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000040 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:31839488..31839515,-!p3@PAX6!1.72!51.44!PAX6;;chr6:45296048..45296082,+!p1@RUNX2!1.62!46.34!RUNX2;;chr14:29235961..29236008,+!p1@FOXG1!1.47!28.60!FOXG1;;chr11:31832658..31832681,-!p1@PAX6!1.45!27.05!PAX6;;chr3:147127142..147127168,+!p1@ZIC1!1.44!26.39!ZIC1;;chr7:35293685..35293718,-!p1@TBX20!1.41!24.83!TBX20;;chr16:86600426..86600441,+!p1@FOXC2!1.40!58.31!FOXC2;;chr13:72441315..72441454,-!p1@DACH1!1.40!47.23!DACH1;;chr10:48355030..48355090,+!p1@ZNF488!1.38!29.49!ZNF488;;chr20:30433396..30433414,-!p1@FOXS1!1.36!21.73!FOXS1;;chr5:92918919..92918942,+!p1@NR2F1!1.33!89.80!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.56!HMGA2;;chr2:45168875..45168916,+!p1@SIX3!1.29!18.63!SIX3;;chr12:66218598..66218645,+!p2@HMGA2!1.28!80.93!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!1.28!62.53!FOXP1;;chr2:5832508..5832524,+!p1@SOX11!1.28!17.96!SOX11;;chr9:126774018..126774055,+!p1@LHX2!1.27!17.74!LHX2;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.85!ZIC1;;chr2:45168834..45168847,+!p2@SIX3!1.24!16.19!SIX3;;chr3:170076314..170076334,+!p2@SKIL!1.21!19.96!SKIL;;chr14:60975883..60975911,+!p1@SIX6!1.19!14.63!SIX6;;chr2:63277948..63277974,+!p1@OTX1!1.19!14.41!OTX1;;chr3:25470156..25470227,+!p2@RARB!1.17!13.75!RARB;;chr14:29236269..29236285,+!p3@FOXG1!1.17!13.75!FOXG1;;chr12:66218212..66218244,+!p5@HMGA2!1.16!19.73!HMGA2;;chr11:31832581..31832601,-!p7@PAX6!1.16!13.30!PAX6;;chr3:21792682..21792720,-!p1@ZNF385D!1.16!13.30!ZNF385D;;chrX:136648279..136648295,+!p1@ZIC3!1.16!13.30!ZIC3;;chr2:45169193..45169219,+!p3@SIX3!1.14!12.86!SIX3;;chr3:25469724..25469773,+!p1@RARB!1.13!18.18!RARB;;chr12:26277817..26277863,-!p2@BHLHE41!1.11!15.96!BHLHE41;;chr4:8873545..8873583,-!p1@HMX1!1.11!11.75!HMX1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.17!HMGA2;;chr3:147111231..147111281,+!p3@ZIC1!1.09!11.31!ZIC1;;chr13:100623375..100623425,-!p1@ZIC5!1.07!10.86!ZIC5;;chr13:72441074..72441172,-!p2@DACH1!1.06!10.42!DACH1;;chr11:31827535..31827565,-!p11@PAX6!1.04!9.98!PAX6;;chr3:147139053..147139112,+!p5@ZIC1!1.04!9.98!ZIC1;;chr1:197886461..197886558,+!p1@LHX9!1.04!9.98!LHX9;;chr3:21792585..21792625,-!p2@ZNF385D!1.03!10.86!ZNF385D;;chr13:45010939..45011033,-!p1@TSC22D1!1.02!631.26!TSC22D1;;chr11:31832610..31832639,-!p5@PAX6!1.02!9.53!PAX6;;chr19:46800289..46800327,+!p2@HIF3A!1.02!9.53!HIF3A;;chr1:151032922..151032951,+!p2@MLLT11!0.98!14.41!MLLT11;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.93!HMGA2;;chr5:92918894..92918912,+!p2@NR2F1!0.97!27.94!NR2F1;;chr12:26277956..26277980,-!p1@BHLHE41!0.96!30.16!BHLHE41;;chr5:92919100..92919135,+!p3@NR2F1!0.96!9.98!NR2F1;;chr3:71631151..71631194,-!p15@FOXP1!0.96!9.09!FOXP1;;chr13:100634031..100634045,+!p1@ZIC2!0.96!8.20!ZIC2;;chr14:29234581..29234601,+!p2@FOXG1!0.96!8.20!FOXG1;;chrX:136648643..136648711,+!p2@ZIC3!0.96!8.20!ZIC3;;chr1:151032860..151032918,+!p1@MLLT11!0.92!90.02!MLLT11;;chr2:25475120..25475176,-!p2@DNMT3A!0.92!9.98!DNMT3A;;chr2:45169143..45169167,+!p5@SIX3!0.90!6.87!SIX3;;chrY:21906594..21906622,-!p1@KDM5D!0.90!6.87!KDM5D;;chr14:73360799..73360817,-!p1@DPF3!0.89!24.39!DPF3;;chr5:92918768..92918783,+!p8@NR2F1!0.88!6.65!NR2F1;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.54!MECOM;;chr9:77112244..77112262,+!p1@RORB!0.86!7.10!RORB;;chrX:139587228..139587234,-!p1@SOX3!0.86!6.21!SOX3;;chr14:60975858..60975869,+!p2@SIX6!0.86!6.21!SIX6;;chr12:80084279..80084293,-!p8@PAWR!0.85!10.42!PAWR;;chr9:4300050..4300118,-!p1@GLIS3!0.84!41.02!GLIS3;;chr17:59477233..59477263,+!p1@TBX2!0.84!19.29!TBX2;;chr11:31832807..31832823,-!p4@PAX6!0.84!5.99!PAX6;;chr14:60975644..60975673,+!p3@SIX6!0.84!5.99!SIX6;;chr18:56940611..56940660,-!p1@RAX!0.83!5.76!RAX;;chr2:63277978..63277995,+!p2@OTX1!0.83!5.76!OTX1;;chr3:25470062..25470084,+!p4@RARB!0.83!5.76!RARB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.82!5.99!GLIS1;;chr13:45009301..45009320,-!p7@TSC22D1!0.82!5.54!TSC22D1;;chr5:92918789..92918800,+!p12@NR2F1!0.82!5.54!NR2F1;;chr9:16705069..16705086,-!p3@BNC2!0.82!5.54!BNC2;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.54!FOXC2;;chr5:72744594..72744609,-!p1@FOXD1!0.80!25.94!FOXD1;;chr11:31832862..31832884,-!p2@PAX6!0.80!5.32!PAX6;;chr14:21994337..21994442,-!p1@SALL2!0.79!15.08!SALL2;;chr1:164528616..164528660,+!p5@PBX1!0.79!11.09!PBX1;;chr5:92918956..92918969,+!p4@NR2F1!0.79!5.76!NR2F1;;chr3:147124307..147124336,-!p2@ZIC4!0.79!5.10!ZIC4;;chr8:77593474..77593612,+!p1@ZFHX4!0.78!23.06!ZFHX4;;chr2:66662281..66662308,+!p1@MEIS1!0.78!18.85!MEIS1;;chr12:66218573..66218596,+!p7@HMGA2!0.78!7.76!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.78!6.43!FOXF1;;chr18:19749541..19749557,+!p1@GATA6!0.77!16.41!GATA6;;chr11:31832687..31832704,-!p6@PAX6!0.77!4.88!PAX6;;chr3:150126759..150126784,+!p2@TSC22D2!0.76!23.73!TSC22D2;;chr8:60031619..60031676,-!p1@TOX!0.76!11.09!TOX;;chr12:26277929..26277955,-!p3@BHLHE41!0.76!7.10!BHLHE41;;chr6:45390077..45390105,+!p9@RUNX2!0.76!6.21!RUNX2;;chr5:92918860..92918871,+!p10@NR2F1!0.76!5.32!NR2F1;;chr14:61116183..61116208,-!p1@SIX1!0.75!19.07!SIX1;;chr3:170076223..170076242,+!p6@SKIL!0.75!5.32!SKIL;;chr2:5832493..5832507,+!p2@SOX11!0.75!4.66!SOX11;;chr3:147111198..147111225,+!p4@ZIC1!0.75!4.66!ZIC1;;chr3:181429704..181429722,+!p1@SOX2!0.75!4.66!SOX2;;chr19:49864746..49864780,-!p2@TEAD2!0.74!6.43!TEAD2;;chr6:43140095..43140145,+!p5@SRF!0.74!5.76!SRF;;chr5:92919068..92919082,+!p5@NR2F1!0.74!5.54!NR2F1;;chr1:164528687..164528711,+!p6@PBX1!0.74!5.32!PBX1;;chrX:84498989..84499003,+!p1@ZNF711!0.73!6.21!ZNF711;;chr9:16870659..16870675,-!p2@BNC2!0.72!5.32!BNC2;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.66!NR2F1;;chr2:45169179..45169190,+!p8@SIX3!0.72!4.21!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.72!4.21!RARB;;chr16:86601052..86601066,+!p4@FOXC2!0.72!4.21!FOXC2;;chr12:66357214..66357233,+!p13@HMGA2!0.72!4.21!HMGA2;;chr2:60780607..60780624,-!p2@BCL11A!0.70!13.75!BCL11A;;chr6:45390025..45390076,+!p2@RUNX2!0.70!10.42!RUNX2;;chr11:61520075..61520136,+!p1@C11orf9!0.70!9.31!C11orf9;;chr8:60031682..60031710,-!p2@TOX!0.70!6.87!TOX;;chr6:45390300..45390335,+!p4@RUNX2!0.70!6.65!RUNX2;;chr19:53496768..53496799,-!p1@ZNF702P!0.70!6.65!ZNF702P;;chr11:31839453..31839462,-!p9@PAX6!0.70!3.99!PAX6;;chr9:126774058..126774081,+!p3@LHX2!0.70!3.99!LHX2;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.76!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.69!4.66!FOXP1;;chr3:71355163..71355209,-!p5@FOXP1!0.68!5.54!FOXP1;;chr7:14028488..14028516,-!p2@ETV1!0.68!4.21!ETV1;;chrX:136648297..136648319,+!p3@ZIC3!0.68!3.77!ZIC3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.68!3.77!PEG3;;chr3:147127329..147127341,+!p7@ZIC1!0.68!3.77!ZIC1;;chr6:21593973..21593988,+!p1@SOX4!0.67!154.10!SOX4;;chr7:14029283..14029311,-!p1@ETV1!0.67!22.62!ETV1;;chr5:92920456..92920488,+!p9@NR2F1!0.67!4.43!NR2F1;;chr2:71127699..71127744,+!p1@VAX2!0.66!7.98!VAX2;;chr3:12330560..12330579,+!p1@PPARG!0.66!4.21!PPARG;;chr3:21792631..21792665,-!p3@ZNF385D!0.66!3.55!ZNF385D;;chr4:8873716..8873738,-!p2@HMX1!0.66!3.55!HMX1;;chr20:45142154..45142227,-!p1@ZNF334!0.65!7.54!ZNF334;;chr7:113726357..113726443,+!p1@FOXP2!0.65!6.43!FOXP2;;chr12:66218378..66218401,+!p6@HMGA2!0.65!5.76!HMGA2;;chr1:23696448..23696453,-!p5@ZNF436!0.65!4.43!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.65!3.99!ZNF436;;chr5:124082322..124082364,-!p1@ZNF608!0.64!9.76!ZNF608;;chr12:24715376..24715432,-!p1@SOX5!0.64!4.43!SOX5;;chr12:66358080..66358094,+!p15@HMGA2!0.64!3.33!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!0.64!3.33!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!0.63!18.63!NFE2L3;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr3:150126904..150126958,+!p7@TSC22D2!0.63!6.21!TSC22D2;;chr9:4299979..4299996,-!p3@GLIS3!0.63!5.76!GLIS3;;chr1:8926441..8926473,-!p10@ENO1!0.63!5.32!ENO1;;chrX:84499081..84499115,+!p2@ZNF711!0.63!5.10!ZNF711;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.21!FOXD1;;chr2:66662895..66662907,+!p3@MEIS1!0.63!4.21!MEIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.62!23.50!SNAI2;;chr14:62162285..62162296,+!p3@HIF1A!0.62!19.29!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.76!FOXD1;;chr20:50721803..50721857,-!p2@ZFP64!0.62!5.32!ZFP64;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.43!ARNT2;;chr15:37392724..37392757,-!p1@MEIS2!0.61!16.41!MEIS2;;chr9:4300016..4300039,-!p2@GLIS3!0.61!5.76!GLIS3;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.21!BCL3;;chr3:168865194..168865245,-!p3@MECOM!0.61!4.21!MECOM;;chr12:80083807..80083859,-!p11@PAWR!0.61!3.99!PAWR;;chr2:25475094..25475112,-!p3@DNMT3A!0.61!3.10!DNMT3A;;chrY:2803415..2803468,+!p1@ZFY!0.61!3.10!ZFY;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.76!ZNF804A;;chr12:66218443..66218461,+!p8@HMGA2!0.60!3.99!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!0.59!33.48!HIF1A;;chr7:28725740..28725778,+!p1@CREB5!0.59!31.04!CREB5;;chr3:114343768..114343822,-!p1@ZBTB20!0.59!15.08!ZBTB20;;chr1:164528911..164528940,+!p7@PBX1!0.59!4.66!PBX1;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.21!CENPT;;chr12:26278008..26278024,-!p4@BHLHE41!0.59!3.55!BHLHE41;;chr16:30406423..30406447,+!p4@ZNF48!0.59!2.88!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.59!2.88!FOXC2;;chr18:42260840..42260860,+!p2@SETBP1!0.59!2.88!SETBP1;;chr2:45169233..45169244,+!p10@SIX3!0.59!2.88!SIX3;;chr3:168865144..168865160,-!p6@MECOM!0.59!2.88!MECOM;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.82!TEAD2;;chr1:164528410..164528428,+!p1@PBX1!0.57!25.28!PBX1;;chr19:1592714..1592762,-!p1@MBD3!0.57!25.28!MBD3;;chr21:30671690..30671762,+!p2@BACH1!0.57!11.09!BACH1;;chr9:14083467..14083483,-!p4@NFIB!0.57!7.76!NFIB;;chr15:96869255..96869291,+!p6@NR2F2!0.57!5.54!NR2F2;;chr9:16870710..16870763,-!p1@BNC2!0.57!5.32!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.57!5.10!CREB3L1;;chr3:42947600..42947680,+!p1@ZNF662!0.57!4.21!ZNF662;;chr20:6748325..6748352,+!p1@BMP2!0.57!4.21!BMP2;;chr12:125002739..125002756,-!p6@NCOR2!0.56!4.21!NCOR2;;chr6:134210243..134210257,+!p1@TCF21!0.56!2.66!TCF21;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.66!ZFHX4;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.98!ENO1;;chr15:66994561..66994597,+!p2@SMAD6!0.55!7.10!SMAD6;;chr1:23696308..23696339,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| |expression_enrichment_score=chr11:31839488..31839515,-!p3@PAX6!1.72!51.44!PAX6;;chr6:45296048..45296082,+!p1@RUNX2!1.62!46.34!RUNX2;;chr14:29235961..29236008,+!p1@FOXG1!1.47!28.60!FOXG1;;chr11:31832658..31832681,-!p1@PAX6!1.45!27.05!PAX6;;chr3:147127142..147127168,+!p1@ZIC1!1.44!26.39!ZIC1;;chr7:35293685..35293718,-!p1@TBX20!1.41!24.83!TBX20;;chr16:86600426..86600441,+!p1@FOXC2!1.40!58.31!FOXC2;;chr13:72441315..72441454,-!p1@DACH1!1.40!47.23!DACH1;;chr10:48355030..48355090,+!p1@ZNF488!1.38!29.49!ZNF488;;chr20:30433396..30433414,-!p1@FOXS1!1.36!21.73!FOXS1;;chr5:92918919..92918942,+!p1@NR2F1!1.33!89.80!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.56!HMGA2;;chr2:45168875..45168916,+!p1@SIX3!1.29!18.63!SIX3;;chr12:66218598..66218645,+!p2@HMGA2!1.28!80.93!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!1.28!62.53!FOXP1;;chr2:5832508..5832524,+!p1@SOX11!1.28!17.96!SOX11;;chr9:126774018..126774055,+!p1@LHX2!1.27!17.74!LHX2;;chr3:147127177..147127194,+!p2@ZIC1!1.25!16.85!ZIC1;;chr2:45168834..45168847,+!p2@SIX3!1.24!16.19!SIX3;;chr3:170076314..170076334,+!p2@SKIL!1.21!19.96!SKIL;;chr14:60975883..60975911,+!p1@SIX6!1.19!14.63!SIX6;;chr2:63277948..63277974,+!p1@OTX1!1.19!14.41!OTX1;;chr3:25470156..25470227,+!p2@RARB!1.17!13.75!RARB;;chr14:29236269..29236285,+!p3@FOXG1!1.17!13.75!FOXG1;;chr12:66218212..66218244,+!p5@HMGA2!1.16!19.73!HMGA2;;chr11:31832581..31832601,-!p7@PAX6!1.16!13.30!PAX6;;chr3:21792682..21792720,-!p1@ZNF385D!1.16!13.30!ZNF385D;;chrX:136648279..136648295,+!p1@ZIC3!1.16!13.30!ZIC3;;chr2:45169193..45169219,+!p3@SIX3!1.14!12.86!SIX3;;chr3:25469724..25469773,+!p1@RARB!1.13!18.18!RARB;;chr12:26277817..26277863,-!p2@BHLHE41!1.11!15.96!BHLHE41;;chr4:8873545..8873583,-!p1@HMX1!1.11!11.75!HMX1;;chr12:66218183..66218209,+!p4@HMGA2!1.10!22.17!HMGA2;;chr3:147111231..147111281,+!p3@ZIC1!1.09!11.31!ZIC1;;chr13:100623375..100623425,-!p1@ZIC5!1.07!10.86!ZIC5;;chr13:72441074..72441172,-!p2@DACH1!1.06!10.42!DACH1;;chr11:31827535..31827565,-!p11@PAX6!1.04!9.98!PAX6;;chr3:147139053..147139112,+!p5@ZIC1!1.04!9.98!ZIC1;;chr1:197886461..197886558,+!p1@LHX9!1.04!9.98!LHX9;;chr3:21792585..21792625,-!p2@ZNF385D!1.03!10.86!ZNF385D;;chr13:45010939..45011033,-!p1@TSC22D1!1.02!631.26!TSC22D1;;chr11:31832610..31832639,-!p5@PAX6!1.02!9.53!PAX6;;chr19:46800289..46800327,+!p2@HIF3A!1.02!9.53!HIF3A;;chr1:151032922..151032951,+!p2@MLLT11!0.98!14.41!MLLT11;;chr12:66218836..66218888,+!p1@HMGA2!0.97!80.93!HMGA2;;chr5:92918894..92918912,+!p2@NR2F1!0.97!27.94!NR2F1;;chr12:26277956..26277980,-!p1@BHLHE41!0.96!30.16!BHLHE41;;chr5:92919100..92919135,+!p3@NR2F1!0.96!9.98!NR2F1;;chr3:71631151..71631194,-!p15@FOXP1!0.96!9.09!FOXP1;;chr13:100634031..100634045,+!p1@ZIC2!0.96!8.20!ZIC2;;chr14:29234581..29234601,+!p2@FOXG1!0.96!8.20!FOXG1;;chrX:136648643..136648711,+!p2@ZIC3!0.96!8.20!ZIC3;;chr1:151032860..151032918,+!p1@MLLT11!0.92!90.02!MLLT11;;chr2:25475120..25475176,-!p2@DNMT3A!0.92!9.98!DNMT3A;;chr2:45169143..45169167,+!p5@SIX3!0.90!6.87!SIX3;;chrY:21906594..21906622,-!p1@KDM5D!0.90!6.87!KDM5D;;chr14:73360799..73360817,-!p1@DPF3!0.89!24.39!DPF3;;chr5:92918768..92918783,+!p8@NR2F1!0.88!6.65!NR2F1;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.54!MECOM;;chr9:77112244..77112262,+!p1@RORB!0.86!7.10!RORB;;chrX:139587228..139587234,-!p1@SOX3!0.86!6.21!SOX3;;chr14:60975858..60975869,+!p2@SIX6!0.86!6.21!SIX6;;chr12:80084279..80084293,-!p8@PAWR!0.85!10.42!PAWR;;chr9:4300050..4300118,-!p1@GLIS3!0.84!41.02!GLIS3;;chr17:59477233..59477263,+!p1@TBX2!0.84!19.29!TBX2;;chr11:31832807..31832823,-!p4@PAX6!0.84!5.99!PAX6;;chr14:60975644..60975673,+!p3@SIX6!0.84!5.99!SIX6;;chr18:56940611..56940660,-!p1@RAX!0.83!5.76!RAX;;chr2:63277978..63277995,+!p2@OTX1!0.83!5.76!OTX1;;chr3:25470062..25470084,+!p4@RARB!0.83!5.76!RARB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.82!5.99!GLIS1;;chr13:45009301..45009320,-!p7@TSC22D1!0.82!5.54!TSC22D1;;chr5:92918789..92918800,+!p12@NR2F1!0.82!5.54!NR2F1;;chr9:16705069..16705086,-!p3@BNC2!0.82!5.54!BNC2;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.54!FOXC2;;chr5:72744594..72744609,-!p1@FOXD1!0.80!25.94!FOXD1;;chr11:31832862..31832884,-!p2@PAX6!0.80!5.32!PAX6;;chr14:21994337..21994442,-!p1@SALL2!0.79!15.08!SALL2;;chr1:164528616..164528660,+!p5@PBX1!0.79!11.09!PBX1;;chr5:92918956..92918969,+!p4@NR2F1!0.79!5.76!NR2F1;;chr3:147124307..147124336,-!p2@ZIC4!0.79!5.10!ZIC4;;chr8:77593474..77593612,+!p1@ZFHX4!0.78!23.06!ZFHX4;;chr2:66662281..66662308,+!p1@MEIS1!0.78!18.85!MEIS1;;chr12:66218573..66218596,+!p7@HMGA2!0.78!7.76!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.78!6.43!FOXF1;;chr18:19749541..19749557,+!p1@GATA6!0.77!16.41!GATA6;;chr11:31832687..31832704,-!p6@PAX6!0.77!4.88!PAX6;;chr3:150126759..150126784,+!p2@TSC22D2!0.76!23.73!TSC22D2;;chr8:60031619..60031676,-!p1@TOX!0.76!11.09!TOX;;chr12:26277929..26277955,-!p3@BHLHE41!0.76!7.10!BHLHE41;;chr6:45390077..45390105,+!p9@RUNX2!0.76!6.21!RUNX2;;chr5:92918860..92918871,+!p10@NR2F1!0.76!5.32!NR2F1;;chr14:61116183..61116208,-!p1@SIX1!0.75!19.07!SIX1;;chr3:170076223..170076242,+!p6@SKIL!0.75!5.32!SKIL;;chr2:5832493..5832507,+!p2@SOX11!0.75!4.66!SOX11;;chr3:147111198..147111225,+!p4@ZIC1!0.75!4.66!ZIC1;;chr3:181429704..181429722,+!p1@SOX2!0.75!4.66!SOX2;;chr19:49864746..49864780,-!p2@TEAD2!0.74!6.43!TEAD2;;chr6:43140095..43140145,+!p5@SRF!0.74!5.76!SRF;;chr5:92919068..92919082,+!p5@NR2F1!0.74!5.54!NR2F1;;chr1:164528687..164528711,+!p6@PBX1!0.74!5.32!PBX1;;chrX:84498989..84499003,+!p1@ZNF711!0.73!6.21!ZNF711;;chr9:16870659..16870675,-!p2@BNC2!0.72!5.32!BNC2;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.66!NR2F1;;chr2:45169179..45169190,+!p8@SIX3!0.72!4.21!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.72!4.21!RARB;;chr16:86601052..86601066,+!p4@FOXC2!0.72!4.21!FOXC2;;chr12:66357214..66357233,+!p13@HMGA2!0.72!4.21!HMGA2;;chr2:60780607..60780624,-!p2@BCL11A!0.70!13.75!BCL11A;;chr6:45390025..45390076,+!p2@RUNX2!0.70!10.42!RUNX2;;chr11:61520075..61520136,+!p1@C11orf9!0.70!9.31!C11orf9;;chr8:60031682..60031710,-!p2@TOX!0.70!6.87!TOX;;chr6:45390300..45390335,+!p4@RUNX2!0.70!6.65!RUNX2;;chr19:53496768..53496799,-!p1@ZNF702P!0.70!6.65!ZNF702P;;chr11:31839453..31839462,-!p9@PAX6!0.70!3.99!PAX6;;chr9:126774058..126774081,+!p3@LHX2!0.70!3.99!LHX2;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.76!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.69!4.66!FOXP1;;chr3:71355163..71355209,-!p5@FOXP1!0.68!5.54!FOXP1;;chr7:14028488..14028516,-!p2@ETV1!0.68!4.21!ETV1;;chrX:136648297..136648319,+!p3@ZIC3!0.68!3.77!ZIC3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.68!3.77!PEG3;;chr3:147127329..147127341,+!p7@ZIC1!0.68!3.77!ZIC1;;chr6:21593973..21593988,+!p1@SOX4!0.67!154.10!SOX4;;chr7:14029283..14029311,-!p1@ETV1!0.67!22.62!ETV1;;chr5:92920456..92920488,+!p9@NR2F1!0.67!4.43!NR2F1;;chr2:71127699..71127744,+!p1@VAX2!0.66!7.98!VAX2;;chr3:12330560..12330579,+!p1@PPARG!0.66!4.21!PPARG;;chr3:21792631..21792665,-!p3@ZNF385D!0.66!3.55!ZNF385D;;chr4:8873716..8873738,-!p2@HMX1!0.66!3.55!HMX1;;chr20:45142154..45142227,-!p1@ZNF334!0.65!7.54!ZNF334;;chr7:113726357..113726443,+!p1@FOXP2!0.65!6.43!FOXP2;;chr12:66218378..66218401,+!p6@HMGA2!0.65!5.76!HMGA2;;chr1:23696448..23696453,-!p5@ZNF436!0.65!4.43!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.65!3.99!ZNF436;;chr5:124082322..124082364,-!p1@ZNF608!0.64!9.76!ZNF608;;chr12:24715376..24715432,-!p1@SOX5!0.64!4.43!SOX5;;chr12:66358080..66358094,+!p15@HMGA2!0.64!3.33!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!0.64!3.33!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!0.63!18.63!NFE2L3;;chr5:178368186..178368238,+!p1@ZNF454!0.63!6.43!ZNF454;;chr3:150126904..150126958,+!p7@TSC22D2!0.63!6.21!TSC22D2;;chr9:4299979..4299996,-!p3@GLIS3!0.63!5.76!GLIS3;;chr1:8926441..8926473,-!p10@ENO1!0.63!5.32!ENO1;;chrX:84499081..84499115,+!p2@ZNF711!0.63!5.10!ZNF711;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.21!FOXD1;;chr2:66662895..66662907,+!p3@MEIS1!0.63!4.21!MEIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.62!23.50!SNAI2;;chr14:62162285..62162296,+!p3@HIF1A!0.62!19.29!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.76!FOXD1;;chr20:50721803..50721857,-!p2@ZFP64!0.62!5.32!ZFP64;;chr15:80696703..80696754,+!p1@ARNT2!0.62!4.43!ARNT2;;chr15:37392724..37392757,-!p1@MEIS2!0.61!16.41!MEIS2;;chr9:4300016..4300039,-!p2@GLIS3!0.61!5.76!GLIS3;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.21!BCL3;;chr3:168865194..168865245,-!p3@MECOM!0.61!4.21!MECOM;;chr12:80083807..80083859,-!p11@PAWR!0.61!3.99!PAWR;;chr2:25475094..25475112,-!p3@DNMT3A!0.61!3.10!DNMT3A;;chrY:2803415..2803468,+!p1@ZFY!0.61!3.10!ZFY;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.76!ZNF804A;;chr12:66218443..66218461,+!p8@HMGA2!0.60!3.99!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!0.59!33.48!HIF1A;;chr7:28725740..28725778,+!p1@CREB5!0.59!31.04!CREB5;;chr3:114343768..114343822,-!p1@ZBTB20!0.59!15.08!ZBTB20;;chr1:164528911..164528940,+!p7@PBX1!0.59!4.66!PBX1;;chr16:67881588..67881612,-!p2@CENPT!0.59!4.21!CENPT;;chr12:26278008..26278024,-!p4@BHLHE41!0.59!3.55!BHLHE41;;chr16:30406423..30406447,+!p4@ZNF48!0.59!2.88!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.59!2.88!FOXC2;;chr18:42260840..42260860,+!p2@SETBP1!0.59!2.88!SETBP1;;chr2:45169233..45169244,+!p10@SIX3!0.59!2.88!SIX3;;chr3:168865144..168865160,-!p6@MECOM!0.59!2.88!MECOM;;chr19:49865646..49865718,-!p1@TEAD2!0.57!28.82!TEAD2;;chr1:164528410..164528428,+!p1@PBX1!0.57!25.28!PBX1;;chr19:1592714..1592762,-!p1@MBD3!0.57!25.28!MBD3;;chr21:30671690..30671762,+!p2@BACH1!0.57!11.09!BACH1;;chr9:14083467..14083483,-!p4@NFIB!0.57!7.76!NFIB;;chr15:96869255..96869291,+!p6@NR2F2!0.57!5.54!NR2F2;;chr9:16870710..16870763,-!p1@BNC2!0.57!5.32!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.57!5.10!CREB3L1;;chr3:42947600..42947680,+!p1@ZNF662!0.57!4.21!ZNF662;;chr20:6748325..6748352,+!p1@BMP2!0.57!4.21!BMP2;;chr12:125002739..125002756,-!p6@NCOR2!0.56!4.21!NCOR2;;chr6:134210243..134210257,+!p1@TCF21!0.56!2.66!TCF21;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.66!ZFHX4;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.98!ENO1;;chr15:66994561..66994597,+!p2@SMAD6!0.55!7.10!SMAD6;;chr1:23696308..23696339,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Ciliary%2520Epithelial%2520Cells%252c%2520donor2.CNhs11966.11323-117D9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11323-117D9 | |id=FF:11323-117D9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000040 | ||
|is_obsolete= | |||
|library_id=CNhs11966 | |||
|library_id_phase_based=2:CNhs11966 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11323 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.CTTGTA.11323 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11323 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.CTTGTA.11323 | |||
|name=Ciliary Epithelial Cells, donor2 | |name=Ciliary Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11966,LSID836,release011,COMPLETED | |profile_hcage=CNhs11966,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC6585 | |rna_catalog_number=SC6585 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117D9 | |rna_tube_id=117D9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.CTTGTA | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=T:2.04354886063;NKX2-1,4:2.00531233997;ZIC1..3:1.95752617052;PAX1,9:1.78332765409;ZNF384:1.58101068258;SOX17:1.3566777092;CDC5L:1.23596941698;SOX2:1.22158190373;NKX3-1:1.17989473258;EVI1:1.17762827064;ONECUT1,2:1.12225368599;UFEwm:1.12140966271;GFI1:1.12030016714;NR3C1:1.10783604925;HOXA9_MEIS1:1.0458195469;TEAD1:0.9809840428;NANOG:0.974380684572;MZF1:0.960353876975;FOXP1:0.95466847667;TOPORS:0.928299834013;EBF1:0.881609562578;MAZ:0.866559538227;NKX6-1,2:0.823128793641;HOX{A4,D4}:0.804827717811;EGR1..3:0.798179420409;NR6A1:0.757170942316;POU3F1..4:0.736405632669;GFI1B:0.736085079453;ALX1:0.712833026944;HMGA1,2:0.680422675879;NFY{A,B,C}:0.662126991023;ZFP161:0.659885301558;DBP:0.642566558054;SRF:0.640448734499;HSF1,2:0.632480769245;GTF2A1,2:0.631458445725;KLF4:0.618115644159;ALX4:0.594629042018;CDX1,2,4:0.590020303663;LHX3,4:0.58858454871;TFCP2:0.578616629894;TFDP1:0.565327360553;TBX4,5:0.552185964571;NKX2-3_NKX2-5:0.522227715578;STAT1,3:0.521009956187;PAX5:0.518449624033;SP1:0.513715106421;AIRE:0.511017540567;TFAP2{A,C}:0.503925177806;GATA4:0.503050585875;TLX1..3_NFIC{dimer}:0.499086341369;PATZ1:0.49510520105;TFAP4:0.4454890519;IKZF1:0.440283795911;GZF1:0.438153853851;NRF1:0.418851737833;XCPE1{core}:0.407760622206;PAX8:0.403703730173;E2F1..5:0.401582106639;ELK1,4_GABP{A,B1}:0.393915001963;HOX{A5,B5}:0.379949023002;ZBTB6:0.377865516468;GTF2I:0.360820591977;PAX4:0.358641822021;MTE{core}:0.351095732379;POU6F1:0.331698386064;SOX{8,9,10}:0.326981391345;ZNF143:0.324118719693;PRDM1:0.27529592701;RXR{A,B,G}:0.258219337707;ZBTB16:0.234213375037;FOXD3:0.232404145471;HIC1:0.214629191636;TEF:0.211293468525;PBX1:0.204025211933;TFAP2B:0.190860652121;MYBL2:0.183799701088;GLI1..3:0.183382121754;TAL1_TCF{3,4,12}:0.181409148584;ESRRA:0.176317605999;YY1:0.151892927877;NFATC1..3:0.151590092321;HNF4A_NR2F1,2:0.134790986123;POU5F1:0.121427176973;OCT4_SOX2{dimer}:0.119393954335;NFE2L1:0.119246641247;EN1,2:0.116334189093;ADNP_IRX_SIX_ZHX:0.110546404186;ZNF148:0.0857576180134;LEF1_TCF7_TCF7L1,2:0.0736384583636;PITX1..3:0.0661543948574;FOXM1:0.0581553661171;NKX3-2:0.0526889132147;IKZF2:0.0393566177416;NHLH1,2:0.022210270876;RBPJ:0.0177417693562;XBP1:0.0136449404946;RFX1:0.0122125014912;HMX1:0.00942254750912;FOSL2:-0.0164438140794;MYOD1:-0.0172904599741;TP53:-0.040611919639;AHR_ARNT_ARNT2:-0.0631898451043;BACH2:-0.0673333676262;MTF1:-0.0792850358599;SPZ1:-0.103895728054;MYFfamily:-0.111585660378;NANOG{mouse}:-0.112116506559;LMO2:-0.12411823747;NR1H4:-0.13182978016;CRX:-0.138392614142;GCM1,2:-0.141508875317;SMAD1..7,9:-0.161581420107;MYB:-0.175276386858;FOS_FOS{B,L1}_JUN{B,D}:-0.185629427661;HNF1A:-0.187731014356;NKX2-2,8:-0.19206663387;PAX6:-0.197334760053;ARID5B:-0.200525421199;RREB1:-0.205624157019;NFE2L2:-0.206393154565;STAT2,4,6:-0.206676910213;BREu{core}:-0.215140652211;JUN:-0.217042451296;FOXL1:-0.219214519679;RUNX1..3:-0.221872000983;VSX1,2:-0.22739645277;NR5A1,2:-0.238664505705;RXRA_VDR{dimer}:-0.239733580443;POU2F1..3:-0.245023703291;ZEB1:-0.254569354664;REST:-0.258045674538;FOXA2:-0.285419452862;CUX2:-0.294349602504;TLX2:-0.296326046465;POU1F1:-0.299481884132;TBP:-0.308294482254;MED-1{core}:-0.317575395886;SNAI1..3:-0.317898853315;ATF6:-0.318684719996;MEF2{A,B,C,D}:-0.321065612305;FOXN1:-0.368280683408;NFE2:-0.369508307449;TGIF1:-0.380540415954;PRRX1,2:-0.399735965588;CREB1:-0.410424454597;FOXP3:-0.423206057753;NFIX:-0.428489156456;NFKB1_REL_RELA:-0.429045956935;AR:-0.430762239448;HOX{A6,A7,B6,B7}:-0.441646028656;RFX2..5_RFXANK_RFXAP:-0.48095852778;ZNF423:-0.488401496691;ATF4:-0.489604444284;IRF1,2:-0.491910846866;PAX2:-0.495533445124;SOX5:-0.49785056063;HIF1A:-0.499610695936;BPTF:-0.518758768778;ELF1,2,4:-0.540091719778;PAX3,7:-0.554349551569;FOXQ1:-0.56444361503;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.606645414045;SPI1:-0.607038315487;STAT5{A,B}:-0.607845350412;HLF:-0.612886197698;ATF2:-0.62844953028;ESR1:-0.639259428953;FOX{D1,D2}:-0.646035255901;EP300:-0.648386901194;SPIB:-0.664624896862;RORA:-0.676556290285;MAFB:-0.679258222527;FOX{I1,J2}:-0.697222077081;ZNF238:-0.745945652904;ETS1,2:-0.757575632909;IRF7:-0.773420084121;ATF5_CREB3:-0.778225081121;DMAP1_NCOR{1,2}_SMARC:-0.780693605026;GATA6:-0.793580165971;bHLH_family:-0.800280039975;FOXO1,3,4:-0.87627895134;SREBF1,2:-0.884992429057;CEBPA,B_DDIT3:-0.897136962169;PDX1:-0.902941096415;NFIL3:-0.926024545055;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.933111306771;HBP1_HMGB_SSRP1_UBTF:-1.0609360863;HAND1,2:-1.09898919768;FOX{F1,F2,J1}:-1.32327217235;PPARG:-1.42742902664;HES1:-1.6043197772 | |top_motifs=T:2.04354886063;NKX2-1,4:2.00531233997;ZIC1..3:1.95752617052;PAX1,9:1.78332765409;ZNF384:1.58101068258;SOX17:1.3566777092;CDC5L:1.23596941698;SOX2:1.22158190373;NKX3-1:1.17989473258;EVI1:1.17762827064;ONECUT1,2:1.12225368599;UFEwm:1.12140966271;GFI1:1.12030016714;NR3C1:1.10783604925;HOXA9_MEIS1:1.0458195469;TEAD1:0.9809840428;NANOG:0.974380684572;MZF1:0.960353876975;FOXP1:0.95466847667;TOPORS:0.928299834013;EBF1:0.881609562578;MAZ:0.866559538227;NKX6-1,2:0.823128793641;HOX{A4,D4}:0.804827717811;EGR1..3:0.798179420409;NR6A1:0.757170942316;POU3F1..4:0.736405632669;GFI1B:0.736085079453;ALX1:0.712833026944;HMGA1,2:0.680422675879;NFY{A,B,C}:0.662126991023;ZFP161:0.659885301558;DBP:0.642566558054;SRF:0.640448734499;HSF1,2:0.632480769245;GTF2A1,2:0.631458445725;KLF4:0.618115644159;ALX4:0.594629042018;CDX1,2,4:0.590020303663;LHX3,4:0.58858454871;TFCP2:0.578616629894;TFDP1:0.565327360553;TBX4,5:0.552185964571;NKX2-3_NKX2-5:0.522227715578;STAT1,3:0.521009956187;PAX5:0.518449624033;SP1:0.513715106421;AIRE:0.511017540567;TFAP2{A,C}:0.503925177806;GATA4:0.503050585875;TLX1..3_NFIC{dimer}:0.499086341369;PATZ1:0.49510520105;TFAP4:0.4454890519;IKZF1:0.440283795911;GZF1:0.438153853851;NRF1:0.418851737833;XCPE1{core}:0.407760622206;PAX8:0.403703730173;E2F1..5:0.401582106639;ELK1,4_GABP{A,B1}:0.393915001963;HOX{A5,B5}:0.379949023002;ZBTB6:0.377865516468;GTF2I:0.360820591977;PAX4:0.358641822021;MTE{core}:0.351095732379;POU6F1:0.331698386064;SOX{8,9,10}:0.326981391345;ZNF143:0.324118719693;PRDM1:0.27529592701;RXR{A,B,G}:0.258219337707;ZBTB16:0.234213375037;FOXD3:0.232404145471;HIC1:0.214629191636;TEF:0.211293468525;PBX1:0.204025211933;TFAP2B:0.190860652121;MYBL2:0.183799701088;GLI1..3:0.183382121754;TAL1_TCF{3,4,12}:0.181409148584;ESRRA:0.176317605999;YY1:0.151892927877;NFATC1..3:0.151590092321;HNF4A_NR2F1,2:0.134790986123;POU5F1:0.121427176973;OCT4_SOX2{dimer}:0.119393954335;NFE2L1:0.119246641247;EN1,2:0.116334189093;ADNP_IRX_SIX_ZHX:0.110546404186;ZNF148:0.0857576180134;LEF1_TCF7_TCF7L1,2:0.0736384583636;PITX1..3:0.0661543948574;FOXM1:0.0581553661171;NKX3-2:0.0526889132147;IKZF2:0.0393566177416;NHLH1,2:0.022210270876;RBPJ:0.0177417693562;XBP1:0.0136449404946;RFX1:0.0122125014912;HMX1:0.00942254750912;FOSL2:-0.0164438140794;MYOD1:-0.0172904599741;TP53:-0.040611919639;AHR_ARNT_ARNT2:-0.0631898451043;BACH2:-0.0673333676262;MTF1:-0.0792850358599;SPZ1:-0.103895728054;MYFfamily:-0.111585660378;NANOG{mouse}:-0.112116506559;LMO2:-0.12411823747;NR1H4:-0.13182978016;CRX:-0.138392614142;GCM1,2:-0.141508875317;SMAD1..7,9:-0.161581420107;MYB:-0.175276386858;FOS_FOS{B,L1}_JUN{B,D}:-0.185629427661;HNF1A:-0.187731014356;NKX2-2,8:-0.19206663387;PAX6:-0.197334760053;ARID5B:-0.200525421199;RREB1:-0.205624157019;NFE2L2:-0.206393154565;STAT2,4,6:-0.206676910213;BREu{core}:-0.215140652211;JUN:-0.217042451296;FOXL1:-0.219214519679;RUNX1..3:-0.221872000983;VSX1,2:-0.22739645277;NR5A1,2:-0.238664505705;RXRA_VDR{dimer}:-0.239733580443;POU2F1..3:-0.245023703291;ZEB1:-0.254569354664;REST:-0.258045674538;FOXA2:-0.285419452862;CUX2:-0.294349602504;TLX2:-0.296326046465;POU1F1:-0.299481884132;TBP:-0.308294482254;MED-1{core}:-0.317575395886;SNAI1..3:-0.317898853315;ATF6:-0.318684719996;MEF2{A,B,C,D}:-0.321065612305;FOXN1:-0.368280683408;NFE2:-0.369508307449;TGIF1:-0.380540415954;PRRX1,2:-0.399735965588;CREB1:-0.410424454597;FOXP3:-0.423206057753;NFIX:-0.428489156456;NFKB1_REL_RELA:-0.429045956935;AR:-0.430762239448;HOX{A6,A7,B6,B7}:-0.441646028656;RFX2..5_RFXANK_RFXAP:-0.48095852778;ZNF423:-0.488401496691;ATF4:-0.489604444284;IRF1,2:-0.491910846866;PAX2:-0.495533445124;SOX5:-0.49785056063;HIF1A:-0.499610695936;BPTF:-0.518758768778;ELF1,2,4:-0.540091719778;PAX3,7:-0.554349551569;FOXQ1:-0.56444361503;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.606645414045;SPI1:-0.607038315487;STAT5{A,B}:-0.607845350412;HLF:-0.612886197698;ATF2:-0.62844953028;ESR1:-0.639259428953;FOX{D1,D2}:-0.646035255901;EP300:-0.648386901194;SPIB:-0.664624896862;RORA:-0.676556290285;MAFB:-0.679258222527;FOX{I1,J2}:-0.697222077081;ZNF238:-0.745945652904;ETS1,2:-0.757575632909;IRF7:-0.773420084121;ATF5_CREB3:-0.778225081121;DMAP1_NCOR{1,2}_SMARC:-0.780693605026;GATA6:-0.793580165971;bHLH_family:-0.800280039975;FOXO1,3,4:-0.87627895134;SREBF1,2:-0.884992429057;CEBPA,B_DDIT3:-0.897136962169;PDX1:-0.902941096415;NFIL3:-0.926024545055;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.933111306771;HBP1_HMGB_SSRP1_UBTF:-1.0609360863;HAND1,2:-1.09898919768;FOX{F1,F2,J1}:-1.32327217235;PPARG:-1.42742902664;HES1:-1.6043197772 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11323-117D9;search_select_hide=table117:FF:11323-117D9 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Ciliary Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11966 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11966
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11966
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.109 |
| 10 | 10 | 0.229 |
| 100 | 100 | 0.637 |
| 101 | 101 | 0.498 |
| 102 | 102 | 0.477 |
| 103 | 103 | 0.165 |
| 104 | 104 | 0.656 |
| 105 | 105 | 0.0522 |
| 106 | 106 | 0.0419 |
| 107 | 107 | 0.705 |
| 108 | 108 | 0.888 |
| 109 | 109 | 0.108 |
| 11 | 11 | 0.114 |
| 110 | 110 | 0.704 |
| 111 | 111 | 0.00601 |
| 112 | 112 | 0.039 |
| 113 | 113 | 0.166 |
| 114 | 114 | 0.115 |
| 115 | 115 | 0.0361 |
| 116 | 116 | 0.779 |
| 117 | 117 | 0.28 |
| 118 | 118 | 0.46 |
| 119 | 119 | 0.621 |
| 12 | 12 | 0.193 |
| 120 | 120 | 0.925 |
| 121 | 121 | 0.961 |
| 122 | 122 | 0.33 |
| 123 | 123 | 0.0816 |
| 124 | 124 | 0.236 |
| 125 | 125 | 0.82 |
| 126 | 126 | 0.101 |
| 127 | 127 | 0.158 |
| 128 | 128 | 0.36 |
| 129 | 129 | 0.335 |
| 13 | 13 | 0.552 |
| 130 | 130 | 0.492 |
| 131 | 131 | 0.693 |
| 132 | 132 | 0.89 |
| 133 | 133 | 0.904 |
| 134 | 134 | 0.55 |
| 135 | 135 | 0.0395 |
| 136 | 136 | 0.24 |
| 137 | 137 | 0.0594 |
| 138 | 138 | 0.24 |
| 139 | 139 | 0.0577 |
| 14 | 14 | 0.615 |
| 140 | 140 | 0.164 |
| 141 | 141 | 0.255 |
| 142 | 142 | 0.98 |
| 143 | 143 | 0.0892 |
| 144 | 144 | 0.771 |
| 145 | 145 | 0.728 |
| 146 | 146 | 0.591 |
| 147 | 147 | 0.539 |
| 148 | 148 | 0.0382 |
| 149 | 149 | 0.234 |
| 15 | 15 | 0.116 |
| 150 | 150 | 0.731 |
| 151 | 151 | 0.212 |
| 152 | 152 | 0.182 |
| 153 | 153 | 0.326 |
| 154 | 154 | 0.558 |
| 155 | 155 | 0.012 |
| 156 | 156 | 0.132 |
| 157 | 157 | 0.378 |
| 158 | 158 | 0.00554 |
| 159 | 159 | 0.544 |
| 16 | 16 | 0.71 |
| 160 | 160 | 0.265 |
| 161 | 161 | 0.66 |
| 162 | 162 | 0.226 |
| 163 | 163 | 0.437 |
| 164 | 164 | 0.286 |
| 165 | 165 | 0.883 |
| 166 | 166 | 0.0398 |
| 167 | 167 | 0.946 |
| 168 | 168 | 0.719 |
| 169 | 169 | 0.00845 |
| 17 | 17 | 0.215 |
| 18 | 18 | 0.0945 |
| 19 | 19 | 0.498 |
| 2 | 2 | 0.422 |
| 20 | 20 | 0.922 |
| 21 | 21 | 0.769 |
| 22 | 22 | 0.154 |
| 23 | 23 | 0.153 |
| 24 | 24 | 0.334 |
| 25 | 25 | 0.253 |
| 26 | 26 | 0.427 |
| 27 | 27 | 0.27 |
| 28 | 28 | 0.919 |
| 29 | 29 | 0.212 |
| 3 | 3 | 0.237 |
| 30 | 30 | 0.895 |
| 31 | 31 | 0.748 |
| 32 | 32 | 0.302 |
| 33 | 33 | 0.445 |
| 34 | 34 | 0.526 |
| 35 | 35 | 0.318 |
| 36 | 36 | 0.0252 |
| 37 | 37 | 0.206 |
| 38 | 38 | 0.119 |
| 39 | 39 | 0.423 |
| 4 | 4 | 0.494 |
| 40 | 40 | 0.071 |
| 41 | 41 | 0.034 |
| 42 | 42 | 0.319 |
| 43 | 43 | 0.0794 |
| 44 | 44 | 0.925 |
| 45 | 45 | 0.428 |
| 46 | 46 | 0.105 |
| 47 | 47 | 0.378 |
| 48 | 48 | 0.337 |
| 49 | 49 | 0.048 |
| 5 | 5 | 0.123 |
| 50 | 50 | 0.716 |
| 51 | 51 | 0.502 |
| 52 | 52 | 0.438 |
| 53 | 53 | 0.37 |
| 54 | 54 | 0.515 |
| 55 | 55 | 0.989 |
| 56 | 56 | 0.498 |
| 57 | 57 | 0.611 |
| 58 | 58 | 0.0756 |
| 59 | 59 | 0.292 |
| 6 | 6 | 0.644 |
| 60 | 60 | 0.0376 |
| 61 | 61 | 0.169 |
| 62 | 62 | 0.0704 |
| 63 | 63 | 0.235 |
| 64 | 64 | 0.204 |
| 65 | 65 | 0.134 |
| 66 | 66 | 0.848 |
| 67 | 67 | 0.832 |
| 68 | 68 | 0.489 |
| 69 | 69 | 0.767 |
| 7 | 7 | 0.29 |
| 70 | 70 | 0.0924 |
| 71 | 71 | 0.144 |
| 72 | 72 | 0.103 |
| 73 | 73 | 0.128 |
| 74 | 74 | 0.64 |
| 75 | 75 | 0.0293 |
| 76 | 76 | 0.197 |
| 77 | 77 | 0.261 |
| 78 | 78 | 0.718 |
| 79 | 79 | 0.536 |
| 8 | 8 | 0.563 |
| 80 | 80 | 0.105 |
| 81 | 81 | 0.483 |
| 82 | 82 | 0.0919 |
| 83 | 83 | 0.579 |
| 84 | 84 | 0.27 |
| 85 | 85 | 0.0489 |
| 86 | 86 | 0.165 |
| 87 | 87 | 0.799 |
| 88 | 88 | 0.743 |
| 89 | 89 | 0.575 |
| 9 | 9 | 0.261 |
| 90 | 90 | 0.516 |
| 91 | 91 | 0.856 |
| 92 | 92 | 0.201 |
| 93 | 93 | 0.0062 |
| 94 | 94 | 0.145 |
| 95 | 95 | 0.0203 |
| 96 | 96 | 0.0499 |
| 97 | 97 | 0.782 |
| 98 | 98 | 0.0547 |
| 99 | 99 | 0.156 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11966
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000064 (ciliated cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000067 (ciliated epithelial cell)
0005012 (multi-ciliated epithelial cell)
0002304 (non-pigmented ciliary epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001778 (ciliary epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0001775 (ciliary body)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000040 (human ciliary epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
