FF:10025-101D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005642 | ||
|HumanCAGEScanFiles=NCig10022;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008730;DRR009602;DRZ001027;DRZ002412;DRZ012377;DRZ013762 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010025 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.33!211.84!POU2AF1;;chr6:134210243..134210257,+!p1@TCF21!2.26!181.39!TCF21;;chr11:47400078..47400106,-!p1@SPI1!2.21!161.18!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.18!151.22!IRF8;;chr12:101869096..101869118,+!p1@SPIC!2.10!124.34!SPIC;;chr2:68592406..68592424,+!p1@PLEK!2.04!109.02!PLEK;;chr21:39870339..39870443,-!p1@ERG!1.88!74.62!ERG;;chr6:391743..391759,+!p1@IRF4!1.82!65.32!IRF4;;chr19:50922187..50922204,+!p1@SPIB!1.77!57.80!SPIB;;chr1:214161272..214161322,+!p1@PROX1!1.76!78.85!PROX1;;chr20:39317868..39317884,-!p1@MAFB!1.73!588.90!MAFB;;chr2:100759010..100759035,-!p1@AFF3!1.70!49.06!AFF3;;chr20:62680984..62680999,-!p1@SOX18!1.56!46.62!SOX18;;chr11:47400062..47400077,-!p2@SPI1!1.54!33.65!SPI1;;chr8:55370487..55370503,+!p1@SOX17!1.52!32.24!SOX17;;chr2:231090471..231090504,+!p2@SP140!1.49!30.07!SP140;;chr10:101292684..101292706,+!p1@NKX2-3!1.49!29.89!NKX2-3;;chr7:50344289..50344323,+!p1@IKZF1!1.46!27.73!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.46!27.54!HIF3A;;chr10:102890846..102890877,+!p2@TLX1!1.44!26.50!TLX1;;chr2:231090433..231090469,+!p1@SP140!1.44!26.32!SP140;;chr10:102891048..102891078,+!p1@TLX1!1.43!25.94!TLX1;;chr2:100759037..100759058,-!p2@AFF3!1.41!24.81!AFF3;;chr20:50159198..50159299,-!p1@NFATC2!1.40!35.06!NFATC2;;chr5:172662197..172662216,-!p1@NKX2-5!1.40!24.34!NKX2-5;;chr9:127269661..127269719,-!p1@NR5A1!1.40!24.15!NR5A1;;chr17:37934204..37934241,-!p3@IKZF3!1.40!23.87!IKZF3;;chr11:47279504..47279563,+!p1@NR1H3!1.38!51.32!NR1H3;;chr17:38020392..38020477,-!p1@IKZF3!1.38!22.93!IKZF3;;chr11:128457446..128457461,-!p4@ETS1!1.38!22.74!ETS1;;chr9:117150254..117150271,-!p1@AKNA!1.37!60.24!AKNA;;chr1:25256756..25256774,-!p1@RUNX3!1.34!38.44!RUNX3;;chr5:88178983..88179012,-!p1@MEF2C!1.32!150.19!MEF2C;;chr7:115670804..115670825,-!p1@TFEC!1.32!19.92!TFEC;;chr7:50343634..50343717,+!p2@IKZF1!1.32!19.74!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.55!KDM5D;;chr9:127269462..127269484,-!p2@NR5A1!1.28!17.86!NR5A1;;chr11:32457075..32457095,-!p1@WT1!1.27!17.57!WT1;;chr5:71803177..71803255,-!p1@ZNF366!1.26!17.29!ZNF366;;chr12:54778471..54778528,-!p1@ZNF385A!1.26!17.01!ZNF385A;;chr15:96873984..96873999,+!p3@NR2F2!1.25!119.92!NR2F2;;chr16:79634624..79634642,-!p1@MAF!1.24!63.44!MAF;;chr3:27763807..27763822,-!p1@EOMES!1.24!16.54!EOMES;;chr13:72441315..72441454,-!p1@DACH1!1.23!31.95!DACH1;;chr18:19749386..19749404,+!p2@GATA6!1.23!22.84!GATA6;;chr14:75988771..75988826,+!p1@BATF!1.22!20.68!BATF;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.41!SPI1;;chr19:45260775..45260838,+!p5@BCL3!1.21!19.74!BCL3;;chr11:47399947..47399961,-!p3@SPI1!1.19!14.66!SPI1;;chr12:54694758..54694805,-!p1@NFE2!1.18!17.29!NFE2;;chr17:37934365..37934387,-!p2@IKZF3!1.18!14.10!IKZF3;;chr5:88120151..88120177,-!p6@MEF2C!1.18!14.00!MEF2C;;chr10:51572408..51572454,+!p3@NCOA4!1.17!79.32!NCOA4;;chr7:50344251..50344288,+!p3@IKZF1!1.17!13.91!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!1.17!13.63!IKZF1;;chr17:6926362..6926377,+!p1@BCL6B!1.16!13.44!BCL6B;;chr17:38020557..38020572,-!p4@IKZF3!1.15!13.25!IKZF3;;chr18:45935720..45935772,-!p1@ZBTB7C!1.15!12.97!ZBTB7C;;chr1:40105299..40105326,-!p1@HEYL!1.14!12.69!HEYL;;chr18:52989031..52989079,-!p2@TCF4!1.13!29.60!TCF4;;chr2:192015701..192015743,-!p1@STAT4!1.13!17.29!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.13!12.50!SPI1;;chr9:37034186..37034216,-!p2@PAX5!1.13!12.50!PAX5;;chr10:102890767..102890780,+!p4@TLX1!1.12!12.12!TLX1;;chr3:71355163..71355209,-!p5@FOXP1!1.10!15.98!FOXP1;;chr18:53068911..53068935,-!p4@TCF4!1.09!12.78!TCF4;;chr16:79634595..79634620,-!p2@MAF!1.08!20.21!MAF;;chr2:145277640..145277771,-!p1@ZEB2!1.07!146.33!ZEB2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.07!10.81!SMARCE1;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.13!ZBTB16;;chr22:29196433..29196445,-!p4@XBP1!1.06!11.65!XBP1;;chr2:60780607..60780624,-!p2@BCL11A!1.05!31.86!BCL11A;;chr19:13213662..13213686,-!p1@LYL1!1.05!15.04!LYL1;;chr11:128457492..128457506,-!p6@ETS1!1.05!10.24!ETS1;;chr4:185395633..185395651,-!p2@IRF2!1.04!15.98!IRF2;;chr19:42636586..42636607,-!p1@POU2F2!1.03!27.54!POU2F2;;chr2:145277882..145277967,-!p3@ZEB2!1.03!16.82!ZEB2;;chr11:128563948..128564003,+!p1@FLI1!1.01!112.78!FLI1;;chr11:128392273..128392308,-!p2@ETS1!1.01!39.47!ETS1;;chr2:100758991..100759009,-!p3@AFF3!1.01!9.21!AFF3;;chr5:158526756..158526797,-!p3@EBF1!1.01!9.12!EBF1;;chr6:106534192..106534224,+!p1@PRDM1!1.00!25.75!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!0.99!11.09!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!0.99!8.83!RUNX3;;chr1:27240455..27240474,-!p1@NR0B2!0.99!8.83!NR0B2;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!234.49!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!0.98!14.19!ZBTB16;;chr2:60781201..60781258,-!p3@BCL11A!0.98!8.46!BCL11A;;chr15:96873921..96873946,+!p1@NR2F2!0.97!242.67!NR2F2;;chr19:13213704..13213726,-!p3@LYL1!0.97!11.09!LYL1;;chr6:106546808..106546833,+!p3@PRDM1!0.96!10.24!PRDM1;;chr17:38020516..38020544,-!p5@IKZF3!0.96!8.18!IKZF3;;chr10:102891168..102891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| |expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.33!211.84!POU2AF1;;chr6:134210243..134210257,+!p1@TCF21!2.26!181.39!TCF21;;chr11:47400078..47400106,-!p1@SPI1!2.21!161.18!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.18!151.22!IRF8;;chr12:101869096..101869118,+!p1@SPIC!2.10!124.34!SPIC;;chr2:68592406..68592424,+!p1@PLEK!2.04!109.02!PLEK;;chr21:39870339..39870443,-!p1@ERG!1.88!74.62!ERG;;chr6:391743..391759,+!p1@IRF4!1.82!65.32!IRF4;;chr19:50922187..50922204,+!p1@SPIB!1.77!57.80!SPIB;;chr1:214161272..214161322,+!p1@PROX1!1.76!78.85!PROX1;;chr20:39317868..39317884,-!p1@MAFB!1.73!588.90!MAFB;;chr2:100759010..100759035,-!p1@AFF3!1.70!49.06!AFF3;;chr20:62680984..62680999,-!p1@SOX18!1.56!46.62!SOX18;;chr11:47400062..47400077,-!p2@SPI1!1.54!33.65!SPI1;;chr8:55370487..55370503,+!p1@SOX17!1.52!32.24!SOX17;;chr2:231090471..231090504,+!p2@SP140!1.49!30.07!SP140;;chr10:101292684..101292706,+!p1@NKX2-3!1.49!29.89!NKX2-3;;chr7:50344289..50344323,+!p1@IKZF1!1.46!27.73!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.46!27.54!HIF3A;;chr10:102890846..102890877,+!p2@TLX1!1.44!26.50!TLX1;;chr2:231090433..231090469,+!p1@SP140!1.44!26.32!SP140;;chr10:102891048..102891078,+!p1@TLX1!1.43!25.94!TLX1;;chr2:100759037..100759058,-!p2@AFF3!1.41!24.81!AFF3;;chr20:50159198..50159299,-!p1@NFATC2!1.40!35.06!NFATC2;;chr5:172662197..172662216,-!p1@NKX2-5!1.40!24.34!NKX2-5;;chr9:127269661..127269719,-!p1@NR5A1!1.40!24.15!NR5A1;;chr17:37934204..37934241,-!p3@IKZF3!1.40!23.87!IKZF3;;chr11:47279504..47279563,+!p1@NR1H3!1.38!51.32!NR1H3;;chr17:38020392..38020477,-!p1@IKZF3!1.38!22.93!IKZF3;;chr11:128457446..128457461,-!p4@ETS1!1.38!22.74!ETS1;;chr9:117150254..117150271,-!p1@AKNA!1.37!60.24!AKNA;;chr1:25256756..25256774,-!p1@RUNX3!1.34!38.44!RUNX3;;chr5:88178983..88179012,-!p1@MEF2C!1.32!150.19!MEF2C;;chr7:115670804..115670825,-!p1@TFEC!1.32!19.92!TFEC;;chr7:50343634..50343717,+!p2@IKZF1!1.32!19.74!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.55!KDM5D;;chr9:127269462..127269484,-!p2@NR5A1!1.28!17.86!NR5A1;;chr11:32457075..32457095,-!p1@WT1!1.27!17.57!WT1;;chr5:71803177..71803255,-!p1@ZNF366!1.26!17.29!ZNF366;;chr12:54778471..54778528,-!p1@ZNF385A!1.26!17.01!ZNF385A;;chr15:96873984..96873999,+!p3@NR2F2!1.25!119.92!NR2F2;;chr16:79634624..79634642,-!p1@MAF!1.24!63.44!MAF;;chr3:27763807..27763822,-!p1@EOMES!1.24!16.54!EOMES;;chr13:72441315..72441454,-!p1@DACH1!1.23!31.95!DACH1;;chr18:19749386..19749404,+!p2@GATA6!1.23!22.84!GATA6;;chr14:75988771..75988826,+!p1@BATF!1.22!20.68!BATF;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.41!SPI1;;chr19:45260775..45260838,+!p5@BCL3!1.21!19.74!BCL3;;chr11:47399947..47399961,-!p3@SPI1!1.19!14.66!SPI1;;chr12:54694758..54694805,-!p1@NFE2!1.18!17.29!NFE2;;chr17:37934365..37934387,-!p2@IKZF3!1.18!14.10!IKZF3;;chr5:88120151..88120177,-!p6@MEF2C!1.18!14.00!MEF2C;;chr10:51572408..51572454,+!p3@NCOA4!1.17!79.32!NCOA4;;chr7:50344251..50344288,+!p3@IKZF1!1.17!13.91!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!1.17!13.63!IKZF1;;chr17:6926362..6926377,+!p1@BCL6B!1.16!13.44!BCL6B;;chr17:38020557..38020572,-!p4@IKZF3!1.15!13.25!IKZF3;;chr18:45935720..45935772,-!p1@ZBTB7C!1.15!12.97!ZBTB7C;;chr1:40105299..40105326,-!p1@HEYL!1.14!12.69!HEYL;;chr18:52989031..52989079,-!p2@TCF4!1.13!29.60!TCF4;;chr2:192015701..192015743,-!p1@STAT4!1.13!17.29!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.13!12.50!SPI1;;chr9:37034186..37034216,-!p2@PAX5!1.13!12.50!PAX5;;chr10:102890767..102890780,+!p4@TLX1!1.12!12.12!TLX1;;chr3:71355163..71355209,-!p5@FOXP1!1.10!15.98!FOXP1;;chr18:53068911..53068935,-!p4@TCF4!1.09!12.78!TCF4;;chr16:79634595..79634620,-!p2@MAF!1.08!20.21!MAF;;chr2:145277640..145277771,-!p1@ZEB2!1.07!146.33!ZEB2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.07!10.81!SMARCE1;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.13!ZBTB16;;chr22:29196433..29196445,-!p4@XBP1!1.06!11.65!XBP1;;chr2:60780607..60780624,-!p2@BCL11A!1.05!31.86!BCL11A;;chr19:13213662..13213686,-!p1@LYL1!1.05!15.04!LYL1;;chr11:128457492..128457506,-!p6@ETS1!1.05!10.24!ETS1;;chr4:185395633..185395651,-!p2@IRF2!1.04!15.98!IRF2;;chr19:42636586..42636607,-!p1@POU2F2!1.03!27.54!POU2F2;;chr2:145277882..145277967,-!p3@ZEB2!1.03!16.82!ZEB2;;chr11:128563948..128564003,+!p1@FLI1!1.01!112.78!FLI1;;chr11:128392273..128392308,-!p2@ETS1!1.01!39.47!ETS1;;chr2:100758991..100759009,-!p3@AFF3!1.01!9.21!AFF3;;chr5:158526756..158526797,-!p3@EBF1!1.01!9.12!EBF1;;chr6:106534192..106534224,+!p1@PRDM1!1.00!25.75!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!0.99!11.09!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!0.99!8.83!RUNX3;;chr1:27240455..27240474,-!p1@NR0B2!0.99!8.83!NR0B2;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!234.49!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!0.98!14.19!ZBTB16;;chr2:60781201..60781258,-!p3@BCL11A!0.98!8.46!BCL11A;;chr15:96873921..96873946,+!p1@NR2F2!0.97!242.67!NR2F2;;chr19:13213704..13213726,-!p3@LYL1!0.97!11.09!LYL1;;chr6:106546808..106546833,+!p3@PRDM1!0.96!10.24!PRDM1;;chr17:38020516..38020544,-!p5@IKZF3!0.96!8.18!IKZF3;;chr10:102891168..102891197,+!p3@TLX1!0.96!8.18!TLX1;;chr2:68592394..68592405,+!p2@PLEK!0.94!7.71!PLEK;;chr5:133451294..133451310,+!p2@TCF7!0.94!7.61!TCF7;;chr13:41593425..41593480,-!p1@ELF1!0.92!48.03!ELF1;;chr18:19749541..19749557,+!p1@GATA6!0.92!24.06!GATA6;;chr7:97840743..97840786,+!p1@BHLHA15!0.92!7.33!BHLHA15;;chr12:26277956..26277980,-!p1@BHLHE41!0.91!26.69!BHLHE41;;chr3:18486354..18486377,-!p2@SATB1!0.91!9.12!SATB1;;chr19:45251395..45251432,+!p8@BCL3!0.91!7.14!BCL3;;chr2:231090344..231090361,-!p3@SP110!0.91!7.05!SP110;;chrX:131623044..131623089,-!p1@MBNL3!0.90!30.17!MBNL3;;chr12:54694653..54694672,-!p2@NFE2!0.90!6.95!NFE2;;chr17:45810594..45810608,+!p1@TBX21!0.90!6.95!TBX21;;chr3:63953435..63953499,+!p1@ATXN7!0.90!6.95!ATXN7;;chr18:22932080..22932170,-!p1@ZNF521!0.89!29.89!ZNF521;;chr5:88179017..88179046,-!p2@MEF2C!0.89!28.10!MEF2C;;chr11:64764435..64764449,-!p1@BATF2!0.89!9.49!BATF2;;chr7:149470641..149470694,-!p1@ZNF467!0.88!31.01!ZNF467;;chr5:88179195..88179224,-!p3@MEF2C!0.88!10.81!MEF2C;;chr2:70142232..70142251,+!p1@MXD1!0.87!37.78!MXD1;;chr19:45252008..45252024,+!p2@BCL3!0.87!22.37!BCL3;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.61!MECOM;;chr2:27371879..27371907,+!p1@TCF23!0.87!6.39!TCF23;;chr11:47400045..47400060,-!p6@SPI1!0.87!6.39!SPI1;;chr21:40177845..40177863,+!p1@ETS2!0.86!389.19!ETS2;;chr15:96874012..96874042,+!p2@NR2F2!0.86!59.30!NR2F2;;chr2:176994408..176994492,+!p1@HOXD8!0.86!6.20!HOXD8;;chr20:56195474..56195506,-!p1@ZBP1!0.86!6.20!ZBP1;;chr2:61108695..61108753,+!p1@REL!0.85!44.08!REL;;chr16:79633894..79633954,-!p3@MAF!0.85!12.12!MAF;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.11!ZFY;;chr1:167298300..167298319,+!p2@POU2F1!0.85!6.11!POU2F1;;chr2:231084659..231084721,-!p1@SP110!0.84!146.71!SP110;;chr6:157098579..157098634,+!p4@ARID1B!0.84!14.00!ARID1B;;chr10:94449703..94449718,+!p1@HHEX!0.83!23.68!HHEX;;chr19:50432132..50432217,+!p2@ATF5!0.83!6.95!ATF5;;chr17:37934188..37934202,-!p8@IKZF3!0.83!5.83!IKZF3;;chr21:40181520..40181558,+!p11@ETS2!0.83!5.83!ETS2;;chrY:21906761..21906810,-!p2@KDM5D!0.83!5.83!KDM5D;;chr17:37934280..37934299,-!p6@IKZF3!0.83!5.73!IKZF3;;chr6:106534230..106534254,+!p2@PRDM1!0.82!14.94!PRDM1;;chr7:63505799..63505904,+!p1@ZNF727!0.82!5.55!ZNF727;;chr5:133450365..133450444,+!p1@TCF7!0.81!27.07!TCF7;;chr10:35484804..35484902,+!p2@CREM!0.81!22.27!CREM;;chr8:60031619..60031676,-!p1@TOX!0.81!12.31!TOX;;chr17:53342311..53342400,+!p1@HLF!0.81!6.30!HLF;;chr7:50343895..50343936,+!p5@IKZF1!0.81!5.45!IKZF1;;chr6:91006518..91006570,-!p1@BACH2!0.80!12.97!BACH2;;chr10:31288398..31288455,-!p2@ZNF438!0.80!6.30!ZNF438;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.80!5.36!MEF2B;;chr10:114710098..114710130,+!p2@TCF7L2!0.79!42.10!TCF7L2;;chr6:144385698..144385742,-!p2@PLAGL1!0.79!6.48!PLAGL1;;chr13:72441074..72441172,-!p2@DACH1!0.79!5.17!DACH1;;chr1:158979686..158979745,+!p1@IFI16!0.78!181.20!IFI16;;chr15:96876966..96877017,+!p12@NR2F2!0.78!7.52!NR2F2;;chr12:54694807..54694832,-!p3@NFE2!0.78!5.08!NFE2;;chr3:114173720..114173794,-!p6@ZBTB20!0.78!4.98!ZBTB20;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.67!TSHZ2;;chr2:60778035..60778060,-!p4@BCL11A!0.77!5.92!BCL11A;;chr3:71179699..71179744,-!p2@FOXP1!0.76!39.29!FOXP1;;chr3:114866084..114866118,-!p2@ZBTB20!0.76!18.61!ZBTB20;;chr10:94449675..94449694,+!p2@HHEX!0.76!13.91!HHEX;;chr10:35484053..35484076,+!p1@CREM!0.76!12.78!CREM;;chr7:128577972..128578047,+!p1@IRF5!0.76!7.89!IRF5;;chr3:107318352..107318392,+!p14@BBX!0.76!4.79!BBX;;chr4:109087445..109087463,-!p1@LEF1!0.76!4.70!LEF1;;chr11:128392085..128392232,-!p1@ETS1!0.75!172.65!ETS1;;chr3:114819124..114819200,-!p3@ZBTB20!0.75!11.56!ZBTB20;;chr9:117138946..117138968,-!p4@AKNA!0.74!4.51!AKNA;;chr19:45261550..45261641,+!p6@BCL3!0.73!7.80!BCL3;;chr10:114889045..114889074,+!p12@TCF7L2!0.73!4.32!TCF7L2;;chr19:16435625..16435682,+!p1@KLF2!0.72!154.60!KLF2;;chr7:44143925..44143970,+!p1@AEBP1!0.72!106.67!AEBP1;;chr9:117160738..117160782,-!p2@AKNA!0.72!19.36!AKNA;;chr10:51572339..51572376,+!p4@NCOA4!0.72!10.34!NCOA4;;chr7:137620650..137620677,-!p3@CREB3L2!0.72!4.23!CREB3L2;;chr3:25470156..25470227,+!p2@RARB!0.72!4.23!RARB;;chr22:29196547..29196563,-!p2@XBP1!0.71!173.59!XBP1;;chr1:158979872..158979898,+!p3@IFI16!0.71!14.10!IFI16;;chr15:96874145..96874166,+!p7@NR2F2!0.71!8.55!NR2F2;;chr3:32023232..32023273,+!p1@ZNF860!0.71!6.20!ZNF860;;chr5:172662303..172662320,-!p2@NKX2-5!0.71!4.14!NKX2-5;;chr21:40177892..40177903,+!p2@ETS2!0.70!18.14!ETS2;;chr17:59477233..59477263,+!p1@TBX2!0.70!13.82!TBX2;;chr14:75988831..75988847,+!p2@BATF!0.70!4.04!BATF;;chr1:25256439..25256476,-!p3@RUNX3!0.70!4.04!RUNX3;;chr6:106546731..106546755,+!p5@PRDM1!0.70!4.04!PRDM1;;chr1:61548225..61548299,+!p1@NFIA!0.69!58.55!NFIA;;chr8:123793860..123793921,+!p2@ZHX2!0.69!11.94!ZHX2;;chr18:77155922..77155939,+!p1@NFATC1!0.69!11.75!NFATC1;;chr8:106330656..106330684,+!p1@ZFPM2!0.69!11.18!ZFPM2;;chr5:88179518..88179569,-!p5@MEF2C!0.69!5.36!MEF2C;;chr7:28725715..28725727,+!p3@CREB5!0.69!4.79!CREB5;;chr14:75904485..75904519,+!p12@JDP2!0.69!3.95!JDP2;;chr18:197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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002106;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004177 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0004872,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10025-101D7 | |id=FF:10025-101D7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010025 | ||
|is_obsolete= | |||
|library_id=CNhs10631 | |||
|library_id_phase_based=2:CNhs10631 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10025 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10025 | |||
|name=spleen, adult, pool1 | |name=spleen, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10022,,, | |profile_cagescan=NCig10022,,, | ||
|profile_hcage=CNhs10631,LSID657,release008,COMPLETED | |profile_hcage=CNhs10631,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,1.08242997642141,0.0195054688671048,0,0,0,0,0.167614206416373,0.10787168088319,0.335577332252536,-0.282403560576942,0,0,0,0.0390109377342095,0,0,0,0,0,0,0.0390109377342095,0,0,-0.114312072614218,0,0,0,0,0.243502208731316,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0.0195054688671048,0,0,0,0,0.0390109377342095,0,-0.0189830044295003,0,0,0,0,0,0,0,0,0.0131873200623149,0,0,0,0.243502208731316,0,0.0052801975408952,0,-0.0579814235083956,0,0,0.069949950651955,0,0,0,0,0,0,0.10787168088319,0,0.0390109377342095,0,0,0.083646788932526,0,0.138598130132424,0,0,0,0,0.106701406241361,0,0,0,0,0.0125839262556152,0.0960770171220692,0.053935840441595,0,0.0329887869561458,0.0494248540713644,0.063154859732128,0,0.194209953782392,0.0195054688671048,0.0390109377342095,0.0405627788947176,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0390109377342095,0.0577829936944455,0,0,0,0.152974202493971,0.195671482014388,0,0,0,0,0,0 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -16 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -16 | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 101: | ||
|sample_tissue=spleen | |sample_tissue=spleen | ||
|top_motifs=POU5F1:2.23351717773;TFAP4:2.05081609735;POU2F1..3:1.85476386081;SPIB:1.8449402307;RBPJ:1.83823476104;ETS1,2:1.83270814229;TLX2:1.81346639899;IRF1,2:1.71073098803;NFATC1..3:1.66382115777;ELF1,2,4:1.6602809751;SPI1:1.41528287697;IRF7:1.4056091439;TFCP2:1.38299799762;T:1.35077963279;STAT1,3:1.34612139379;PRDM1:1.26992258685;DMAP1_NCOR{1,2}_SMARC:1.15321593166;IKZF2:1.15200609435;PATZ1:1.13616435803;RUNX1..3:1.08485540856;SPZ1:1.00293827914;FOXO1,3,4:1.00156962571;AR:0.98731747087;FOX{D1,D2}:0.958044134552;STAT2,4,6:0.93258712567;XCPE1{core}:0.917614163877;SREBF1,2:0.916629986346;FOXA2:0.878253642554;SOX5:0.85121539507;MYFfamily:0.835997422572;RXRA_VDR{dimer}:0.786171942469;NANOG{mouse}:0.779672971973;NR5A1,2:0.764326989721;MTF1:0.714665664457;MAZ:0.700682726989;FOXD3:0.692220342887;MAFB:0.688867279625;MTE{core}:0.686921474919;GATA6:0.681990923649;SMAD1..7,9:0.664238782256;GCM1,2:0.659385339749;MZF1:0.657937098589;TGIF1:0.649209216649;FOXP3:0.645565949322;GATA4:0.644054307402;HMX1:0.633487741193;SP1:0.588815891117;SRF:0.586794722228;HAND1,2:0.557122621579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.554021343842;HBP1_HMGB_SSRP1_UBTF:0.540831563063;PAX6:0.531199631054;MYOD1:0.518207347305;ZNF148:0.504547453325;FOX{I1,J2}:0.494933181777;RREB1:0.415108820084;BREu{core}:0.39190814216;NR1H4:0.381487940804;HNF4A_NR2F1,2:0.35707763675;EP300:0.296443233127;GTF2I:0.281859843647;ALX1:0.276322530884;EBF1:0.262067390416;ZFP161:0.26151257415;FOX{F1,F2,J1}:0.2594401874;ESR1:0.254387631555;MED-1{core}:0.249214375979;EGR1..3:0.23738115451;ATF2:0.227611237088;RXR{A,B,G}:0.198056043895;GTF2A1,2:0.190290217308;ZEB1:0.185955043022;TBP:0.168242359533;TFAP2{A,C}:0.164874672014;LMO2:0.156962621672;HIC1:0.146411417954;HMGA1,2:0.139920992801;NR3C1:0.13960683177;SOX{8,9,10}:0.139585208243;IKZF1:0.118493272116;NFKB1_REL_RELA:0.111712716678;ZNF238:0.0690422176082;GZF1:0.0671320603491;HES1:0.0649379191544;ZNF423:0.0225416439166;NKX6-1,2:0.0078930731922;TFAP2B:-0.000487913669464;PBX1:-0.0181435549882;CEBPA,B_DDIT3:-0.0233954524027;TLX1..3_NFIC{dimer}:-0.0299634043902;NKX3-2:-0.0321675095888;AIRE:-0.0420187679692;ADNP_IRX_SIX_ZHX:-0.0611050185469;PAX5:-0.0638494508638;CUX2:-0.0723460618742;REST:-0.0880578082542;PAX3,7:-0.0978394486975;SNAI1..3:-0.119625896452;NR6A1:-0.131068522303;FOXP1:-0.132636901937;NFIL3:-0.134849060436;FOXN1:-0.159559398106;NKX3-1:-0.163572714325;FOXQ1:-0.16891121889;HIF1A:-0.179669251715;GFI1B:-0.186962512398;HNF1A:-0.199295294742;CRX:-0.209180695698;EN1,2:-0.25824382727;POU1F1:-0.258494943989;OCT4_SOX2{dimer}:-0.270764398767;PAX2:-0.277649012238;ZNF143:-0.292230755705;bHLH_family:-0.299038307563;NFY{A,B,C}:-0.304296476492;SOX2:-0.309669148402;MEF2{A,B,C,D}:-0.311130738812;KLF4:-0.316377837977;E2F1..5:-0.320504401101;CDX1,2,4:-0.322050012681;MYBL2:-0.324018976863;LEF1_TCF7_TCF7L1,2:-0.342994359725;TOPORS:-0.347968231775;NANOG:-0.351965324415;TEF:-0.363749039613;PAX1,9:-0.397661128606;TEAD1:-0.405932763451;NKX2-1,4:-0.410787768615;NHLH1,2:-0.418410120916;HSF1,2:-0.421972007351;TAL1_TCF{3,4,12}:-0.430119474735;ALX4:-0.435375461229;RORA:-0.468134672134;HLF:-0.468526045346;CREB1:-0.478795259028;VSX1,2:-0.481931219609;ATF6:-0.48543947905;NRF1:-0.505215013987;NKX2-2,8:-0.508584536265;ATF4:-0.516784886091;POU3F1..4:-0.531287707609;BPTF:-0.54068175365;EVI1:-0.54578305674;MYB:-0.560639708498;JUN:-0.569269895765;NFE2L2:-0.570515832423;DBP:-0.583821461127;GLI1..3:-0.594274411266;GFI1:-0.599049738314;PPARG:-0.60510710547;RFX2..5_RFXANK_RFXAP:-0.60804779634;HOX{A6,A7,B6,B7}:-0.608502513941;XBP1:-0.620903219913;PRRX1,2:-0.633619114286;ZNF384:-0.636743449643;SOX17:-0.641622965056;AHR_ARNT_ARNT2:-0.645495338333;ATF5_CREB3:-0.6472595173;PDX1:-0.664260935361;POU6F1:-0.68246913778;LHX3,4:-0.690744635561;NFE2:-0.705779943346;TFDP1:-0.714267270286;ELK1,4_GABP{A,B1}:-0.720395149159;TBX4,5:-0.747112443419;FOSL2:-0.757791205039;YY1:-0.777004190932;FOS_FOS{B,L1}_JUN{B,D}:-0.78668462861;ZIC1..3:-0.803018945289;CDC5L:-0.852766154663;FOXM1:-0.857770962712;NKX2-3_NKX2-5:-0.872864951485;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.91919282423;UFEwm:-0.924980358134;BACH2:-0.941392410187;STAT5{A,B}:-0.970100844968;FOXL1:-1.03366097725;PAX8:-1.0574160465;HOXA9_MEIS1:-1.08572242833;PITX1..3:-1.09162706439;HOX{A4,D4}:-1.20576047686;ZBTB6:-1.25698796987;ZBTB16:-1.26765672701;NFE2L1:-1.26911084491;TP53:-1.280275462;RFX1:-1.31179874407;ESRRA:-1.36906286554;HOX{A5,B5}:-1.3723917292;NFIX:-1.39336348888;PAX4:-1.51379388328;ARID5B:-1.70670247799;ONECUT1,2:-2.24148722139 | |top_motifs=POU5F1:2.23351717773;TFAP4:2.05081609735;POU2F1..3:1.85476386081;SPIB:1.8449402307;RBPJ:1.83823476104;ETS1,2:1.83270814229;TLX2:1.81346639899;IRF1,2:1.71073098803;NFATC1..3:1.66382115777;ELF1,2,4:1.6602809751;SPI1:1.41528287697;IRF7:1.4056091439;TFCP2:1.38299799762;T:1.35077963279;STAT1,3:1.34612139379;PRDM1:1.26992258685;DMAP1_NCOR{1,2}_SMARC:1.15321593166;IKZF2:1.15200609435;PATZ1:1.13616435803;RUNX1..3:1.08485540856;SPZ1:1.00293827914;FOXO1,3,4:1.00156962571;AR:0.98731747087;FOX{D1,D2}:0.958044134552;STAT2,4,6:0.93258712567;XCPE1{core}:0.917614163877;SREBF1,2:0.916629986346;FOXA2:0.878253642554;SOX5:0.85121539507;MYFfamily:0.835997422572;RXRA_VDR{dimer}:0.786171942469;NANOG{mouse}:0.779672971973;NR5A1,2:0.764326989721;MTF1:0.714665664457;MAZ:0.700682726989;FOXD3:0.692220342887;MAFB:0.688867279625;MTE{core}:0.686921474919;GATA6:0.681990923649;SMAD1..7,9:0.664238782256;GCM1,2:0.659385339749;MZF1:0.657937098589;TGIF1:0.649209216649;FOXP3:0.645565949322;GATA4:0.644054307402;HMX1:0.633487741193;SP1:0.588815891117;SRF:0.586794722228;HAND1,2:0.557122621579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.554021343842;HBP1_HMGB_SSRP1_UBTF:0.540831563063;PAX6:0.531199631054;MYOD1:0.518207347305;ZNF148:0.504547453325;FOX{I1,J2}:0.494933181777;RREB1:0.415108820084;BREu{core}:0.39190814216;NR1H4:0.381487940804;HNF4A_NR2F1,2:0.35707763675;EP300:0.296443233127;GTF2I:0.281859843647;ALX1:0.276322530884;EBF1:0.262067390416;ZFP161:0.26151257415;FOX{F1,F2,J1}:0.2594401874;ESR1:0.254387631555;MED-1{core}:0.249214375979;EGR1..3:0.23738115451;ATF2:0.227611237088;RXR{A,B,G}:0.198056043895;GTF2A1,2:0.190290217308;ZEB1:0.185955043022;TBP:0.168242359533;TFAP2{A,C}:0.164874672014;LMO2:0.156962621672;HIC1:0.146411417954;HMGA1,2:0.139920992801;NR3C1:0.13960683177;SOX{8,9,10}:0.139585208243;IKZF1:0.118493272116;NFKB1_REL_RELA:0.111712716678;ZNF238:0.0690422176082;GZF1:0.0671320603491;HES1:0.0649379191544;ZNF423:0.0225416439166;NKX6-1,2:0.0078930731922;TFAP2B:-0.000487913669464;PBX1:-0.0181435549882;CEBPA,B_DDIT3:-0.0233954524027;TLX1..3_NFIC{dimer}:-0.0299634043902;NKX3-2:-0.0321675095888;AIRE:-0.0420187679692;ADNP_IRX_SIX_ZHX:-0.0611050185469;PAX5:-0.0638494508638;CUX2:-0.0723460618742;REST:-0.0880578082542;PAX3,7:-0.0978394486975;SNAI1..3:-0.119625896452;NR6A1:-0.131068522303;FOXP1:-0.132636901937;NFIL3:-0.134849060436;FOXN1:-0.159559398106;NKX3-1:-0.163572714325;FOXQ1:-0.16891121889;HIF1A:-0.179669251715;GFI1B:-0.186962512398;HNF1A:-0.199295294742;CRX:-0.209180695698;EN1,2:-0.25824382727;POU1F1:-0.258494943989;OCT4_SOX2{dimer}:-0.270764398767;PAX2:-0.277649012238;ZNF143:-0.292230755705;bHLH_family:-0.299038307563;NFY{A,B,C}:-0.304296476492;SOX2:-0.309669148402;MEF2{A,B,C,D}:-0.311130738812;KLF4:-0.316377837977;E2F1..5:-0.320504401101;CDX1,2,4:-0.322050012681;MYBL2:-0.324018976863;LEF1_TCF7_TCF7L1,2:-0.342994359725;TOPORS:-0.347968231775;NANOG:-0.351965324415;TEF:-0.363749039613;PAX1,9:-0.397661128606;TEAD1:-0.405932763451;NKX2-1,4:-0.410787768615;NHLH1,2:-0.418410120916;HSF1,2:-0.421972007351;TAL1_TCF{3,4,12}:-0.430119474735;ALX4:-0.435375461229;RORA:-0.468134672134;HLF:-0.468526045346;CREB1:-0.478795259028;VSX1,2:-0.481931219609;ATF6:-0.48543947905;NRF1:-0.505215013987;NKX2-2,8:-0.508584536265;ATF4:-0.516784886091;POU3F1..4:-0.531287707609;BPTF:-0.54068175365;EVI1:-0.54578305674;MYB:-0.560639708498;JUN:-0.569269895765;NFE2L2:-0.570515832423;DBP:-0.583821461127;GLI1..3:-0.594274411266;GFI1:-0.599049738314;PPARG:-0.60510710547;RFX2..5_RFXANK_RFXAP:-0.60804779634;HOX{A6,A7,B6,B7}:-0.608502513941;XBP1:-0.620903219913;PRRX1,2:-0.633619114286;ZNF384:-0.636743449643;SOX17:-0.641622965056;AHR_ARNT_ARNT2:-0.645495338333;ATF5_CREB3:-0.6472595173;PDX1:-0.664260935361;POU6F1:-0.68246913778;LHX3,4:-0.690744635561;NFE2:-0.705779943346;TFDP1:-0.714267270286;ELK1,4_GABP{A,B1}:-0.720395149159;TBX4,5:-0.747112443419;FOSL2:-0.757791205039;YY1:-0.777004190932;FOS_FOS{B,L1}_JUN{B,D}:-0.78668462861;ZIC1..3:-0.803018945289;CDC5L:-0.852766154663;FOXM1:-0.857770962712;NKX2-3_NKX2-5:-0.872864951485;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.91919282423;UFEwm:-0.924980358134;BACH2:-0.941392410187;STAT5{A,B}:-0.970100844968;FOXL1:-1.03366097725;PAX8:-1.0574160465;HOXA9_MEIS1:-1.08572242833;PITX1..3:-1.09162706439;HOX{A4,D4}:-1.20576047686;ZBTB6:-1.25698796987;ZBTB16:-1.26765672701;NFE2L1:-1.26911084491;TP53:-1.280275462;RFX1:-1.31179874407;ESRRA:-1.36906286554;HOX{A5,B5}:-1.3723917292;NFIX:-1.39336348888;PAX4:-1.51379388328;ARID5B:-1.70670247799;ONECUT1,2:-2.24148722139 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10025-101D7;search_select_hide=table117:FF:10025-101D7 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | spleen, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10631 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10631
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10631
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.323 |
| 10 | 10 | 0.226 |
| 100 | 100 | 0.0699 |
| 101 | 101 | 0.974 |
| 102 | 102 | 0.756 |
| 103 | 103 | 0.963 |
| 104 | 104 | 0.634 |
| 105 | 105 | 0.198 |
| 106 | 106 | 0.0948 |
| 107 | 107 | 0.107 |
| 108 | 108 | 0.644 |
| 109 | 109 | 0.735 |
| 11 | 11 | 0.921 |
| 110 | 110 | 0.63 |
| 111 | 111 | 0.891 |
| 112 | 112 | 0.154 |
| 113 | 113 | 0.0692 |
| 114 | 114 | 0.426 |
| 115 | 115 | 0.698 |
| 116 | 116 | 0.131 |
| 117 | 117 | 0.164 |
| 118 | 118 | 0.156 |
| 119 | 119 | 0.993 |
| 12 | 12 | 0.925 |
| 120 | 120 | 0.331 |
| 121 | 121 | 0.0579 |
| 122 | 122 | 0.0957 |
| 123 | 123 | 0.867 |
| 124 | 124 | 0.108 |
| 125 | 125 | 0.782 |
| 126 | 126 | 0.529 |
| 127 | 127 | 0.491 |
| 128 | 128 | 0.55 |
| 129 | 129 | 0.0233 |
| 13 | 13 | 0.0374 |
| 130 | 130 | 0.402 |
| 131 | 131 | 0.884 |
| 132 | 132 | 0.719 |
| 133 | 133 | 0.00161 |
| 134 | 134 | 0.313 |
| 135 | 135 | 0.00398 |
| 136 | 136 | 0.73 |
| 137 | 137 | 0.126 |
| 138 | 138 | 0.147 |
| 139 | 139 | 0.636 |
| 14 | 14 | 0.333 |
| 140 | 140 | 0.612 |
| 141 | 141 | 0.828 |
| 142 | 142 | 0.424 |
| 143 | 143 | 0.0664 |
| 144 | 144 | 0.749 |
| 145 | 145 | 0.297 |
| 146 | 146 | 0.477 |
| 147 | 147 | 0.213 |
| 148 | 148 | 0.361 |
| 149 | 149 | 0.342 |
| 15 | 15 | 0.639 |
| 150 | 150 | 0.916 |
| 151 | 151 | 0.948 |
| 152 | 152 | 0.166 |
| 153 | 153 | 0.532 |
| 154 | 154 | 0.366 |
| 155 | 155 | 0.355 |
| 156 | 156 | 0.779 |
| 157 | 157 | 0.228 |
| 158 | 158 | 0.824 |
| 159 | 159 | 0.358 |
| 16 | 16 | 0.641 |
| 160 | 160 | 0.447 |
| 161 | 161 | 0.82 |
| 162 | 162 | 0.491 |
| 163 | 163 | 0.418 |
| 164 | 164 | 0.0199 |
| 165 | 165 | 0.852 |
| 166 | 166 | 0.653 |
| 167 | 167 | 0.0218 |
| 168 | 168 | 5.53779e-4 |
| 169 | 169 | 0.274 |
| 17 | 17 | 0.957 |
| 18 | 18 | 0.494 |
| 19 | 19 | 0.202 |
| 2 | 2 | 0.0229 |
| 20 | 20 | 0.0573 |
| 21 | 21 | 0.569 |
| 22 | 22 | 0.328 |
| 23 | 23 | 0.347 |
| 24 | 24 | 0.373 |
| 25 | 25 | 0.79 |
| 26 | 26 | 0.615 |
| 27 | 27 | 0.0193 |
| 28 | 28 | 0.855 |
| 29 | 29 | 0.205 |
| 3 | 3 | 0.901 |
| 30 | 30 | 0.14 |
| 31 | 31 | 0.509 |
| 32 | 32 | 0.43 |
| 33 | 33 | 0.807 |
| 34 | 34 | 0.0366 |
| 35 | 35 | 0.797 |
| 36 | 36 | 0.756 |
| 37 | 37 | 0.58 |
| 38 | 38 | 0.592 |
| 39 | 39 | 0.742 |
| 4 | 4 | 0.146 |
| 40 | 40 | 0.559 |
| 41 | 41 | 0.767 |
| 42 | 42 | 0.748 |
| 43 | 43 | 0.639 |
| 44 | 44 | 0.531 |
| 45 | 45 | 0.0678 |
| 46 | 46 | 0.788 |
| 47 | 47 | 0.547 |
| 48 | 48 | 0.768 |
| 49 | 49 | 0.933 |
| 5 | 5 | 0.9 |
| 50 | 50 | 0.26 |
| 51 | 51 | 0.536 |
| 52 | 52 | 0.414 |
| 53 | 53 | 0.268 |
| 54 | 54 | 0.524 |
| 55 | 55 | 0.299 |
| 56 | 56 | 0.913 |
| 57 | 57 | 0.0592 |
| 58 | 58 | 0.23 |
| 59 | 59 | 0.0655 |
| 6 | 6 | 0.416 |
| 60 | 60 | 0.416 |
| 61 | 61 | 0.525 |
| 62 | 62 | 0.511 |
| 63 | 63 | 0.838 |
| 64 | 64 | 0.515 |
| 65 | 65 | 0.514 |
| 66 | 66 | 0.119 |
| 67 | 67 | 0.75 |
| 68 | 68 | 0.923 |
| 69 | 69 | 0.219 |
| 7 | 7 | 0.936 |
| 70 | 70 | 0.0531 |
| 71 | 71 | 0.427 |
| 72 | 72 | 0.0166 |
| 73 | 73 | 0.773 |
| 74 | 74 | 0.602 |
| 75 | 75 | 0.233 |
| 76 | 76 | 0.257 |
| 77 | 77 | 0.253 |
| 78 | 78 | 0.928 |
| 79 | 79 | 0.782 |
| 8 | 8 | 0.971 |
| 80 | 80 | 9.55431e-6 |
| 81 | 81 | 0.586 |
| 82 | 82 | 0.416 |
| 83 | 83 | 0.117 |
| 84 | 84 | 0.302 |
| 85 | 85 | 0.407 |
| 86 | 86 | 0.263 |
| 87 | 87 | 0.667 |
| 88 | 88 | 0.351 |
| 89 | 89 | 0.864 |
| 9 | 9 | 0.0495 |
| 90 | 90 | 0.909 |
| 91 | 91 | 0.614 |
| 92 | 92 | 0.409 |
| 93 | 93 | 0.362 |
| 94 | 94 | 0.94 |
| 95 | 95 | 0.517 |
| 96 | 96 | 0.783 |
| 97 | 97 | 0.802 |
| 98 | 98 | 0.305 |
| 99 | 99 | 0.986 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10631
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010025 human spleen - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002106 (spleen)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010025 (human spleen - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)
