FFCP PHASE1:Hg19::chr19:54063237..54063327,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:54063237..54063327,+
|short_description=p@chr19:54063237..54063327,+
|description=CAGE_peak_at_chr19:54063237..54063327,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:54063237..54063327,+ | |||
|coexpression_cluster_id=C437 | |||
|description=CAGE_peak_at_chr19:54063237..54063327,+ | |||
|id=chr19:54063237..54063327,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.25e-07!140;CL:0002031!2.86e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000624;4.61e-10;6!CL:0000860;2.34e-09;33!CL:0002057;2.34e-09;33!CL:0000473;5.25e-08;39!CL:0000234;5.25e-08;39!CL:0000791;9.28e-08;18!CL:0000789;9.28e-08;18!CL:0002419;9.28e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.76e-15,136;CL:0002031,8.22e-15,120;CL:0002087,2.10e-13,115;CL:0000557,1.16e-11,67;CL:0000037,7.28e-11,168;CL:0000473,3.37e-10,48;CL:0000234,3.37e-10,48;CL:0000988,3.53e-10,177;CL:0000860,4.51e-10,42;CL:0002057,4.51e-10,42;CL:0000624,5.97e-10,6;CL:0000839,6.36e-10,66;CL:0002032,1.15e-09,161;CL:0000837,1.15e-09,161;CL:0000766,2.69e-09,72;CL:0002009,3.09e-09,61;CL:0002194,7.04e-08,59;CL:0000576,7.04e-08,59;CL:0000040,7.04e-08,59;CL:0000559,7.04e-08,59;CL:0000791,1.05e-07,18;CL:0000789,1.05e-07,18;CL:0002420,1.05e-07,18;CL:0002419,1.05e-07,18;CL:0000790,1.05e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;3.59e-08;42!CL:0000790;9.28e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.27e-18!115;UBERON:0001049!9.82e-11!57;UBERON:0005068!9.82e-11!57;UBERON:0006241!9.82e-11!57;UBERON:0007135!9.82e-11!57;UBERON:0002780!4.05e-09!41;UBERON:0001890!4.05e-09!41;UBERON:0006240!4.05e-09!41;UBERON:0003080!1.31e-08!42;UBERON:0002616!2.28e-08!59;UBERON:0002346!5.59e-08!90;UBERON:0001017!9.83e-08!82;UBERON:0003075!1.42e-07!86;UBERON:0007284!1.42e-07!86;UBERON:0000955!2.20e-07!69;UBERON:0006238!2.20e-07!69;UBERON:0005743!4.18e-07!86;UBERON:0000073!4.39e-07!94;UBERON:0001016!4.39e-07!94;UBERON:0002020!5.77e-07!34;UBERON:0003528!5.77e-07!34;UBERON:0001893!8.95e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001894;1.34e-07;7!UBERON:0003296;3.81e-07;4!UBERON:0010133;3.81e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.67e-13,114;UBERON:0001049,3.29e-10,56;UBERON:0005068,3.29e-10,56;UBERON:0006241,3.29e-10,56;UBERON:0007135,3.29e-10,56;UBERON:0002371,3.55e-10,76;UBERON:0002390,9.81e-10,98;UBERON:0003061,9.81e-10,98;UBERON:0001474,1.50e-09,82;UBERON:0002346,4.55e-09,86;UBERON:0000073,5.45e-09,53;UBERON:0002616,5.45e-09,53;UBERON:0002780,1.26e-08,41;UBERON:0001890,1.26e-08,41;UBERON:0003080,1.26e-08,41;UBERON:0006240,1.26e-08,41;UBERON:0003075,2.22e-08,82;UBERON:0007284,2.22e-08,82;UBERON:0002193,5.26e-08,108;UBERON:0004765,5.36e-08,90;UBERON:0001894,1.09e-07,7;UBERON:0006222,1.09e-07,7;UBERON:0002405,1.66e-07,93;UBERON:0003296,3.58e-07,4;UBERON:0010133,3.58e-07,4;UBERON:0001434,4.46e-07,100 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.152826811495903,0.0821005894499457,0.472264687882075,0,0.383829398097213,0.77408061658038,0,0,0,0.0774672005803016,0.142169232487422,0,1.10799081706375,8.42286679374595,7.16135873362311,0,0,0,0.436194716338694,0.377875943688809,0.242584061187816,2.78914844286822,5.75635043230556,4.33588919253145,2.58923153089935,3.07392847834921,0,1.72372840368309,9.03678557017357,4.06279459783025,3.38836211176688,3.27487380069415,0,2.44867113896722,3.20929027076094,4.47535988059329,0,1.99463657621632,0.426224750532694,0,1.13477044938228,0,9.54744927975624,9.38669253156363,0.217188844705117,0,0,0,0,0.212604299965044,0,0.44931452458598,0.750884464207532,0.64290234678832,0,0,0,0,0,0,0,0,0,0,0,31.3067133010197,21.1405388173538,24.4654866000146,2.64342657158052,0,0,19.4742672412695,44.4102161906556,35.5690593269151,0,3.58514493296949,3.31413464014313,0,0,2.3568472597987,1.10766947291811,2.43723477388514,0.25618263945135,0.390178042679635,0.657751618414705,0.552700035571697,0.289803085735052,5.04174314751005,1.60524496853828,5.22677619024884,0.113309342697566,1.14966148080576,2.06176467289578,3.79529538029254,0,0.651083453856419,0,0,0,2.49861453104692,0,0,10.6851573909108,22.9998568373816,33.4544372969266,0,0,0,0.722878304769133,0,0,0,0,0.189069634328136,0.221729397462564,0.351339142772504,0.327447688744282,0,0,0.324547393654683,0.348259474598534,0,4.05434061319081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.397227542439656,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0.438977620880838,0,0.150238058906597,0,1.07633781413317,0,0,0,0.103052529238439,0.515281080091258,0.18611685633159,0.168776332241266,0.194874010322397,0.757301322732344,0,0,1.06502877754984,0,0,0,0,0,0.121973706129595,0.265059536642971,0,0.10366105501537,0.252320850875628,1.09493207722749,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0.404493924480493,0.196221465125346,0,0,0,0,0,0,1.96565443335525,5.31710916013264,0.441463099414651,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0.462985512576611,0.380508304469197,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0.268675568108545,0,0,1.47798971368783,0.088048434013226,9.95174954595706,7.06187771743111,3.02981840223312,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,0,0,0,0,0.399891964728228,0,1.00451418286425,14.7583757638122,0,0,0,0,0.410952645100767,0.179060963239896,0.112085143993527,9.65450724989443,23.2877780848279,24.7702060019914,0,0,0,0.167516265334349,1.27587750330633,0,0,1.65766205374414,0,0,0,0.207970861530807,0.356857977594324,0,0.117141414992713,0,0,0,0.664225598535437,0,0,0,0,15.5076019592166,7.76571122947021,11.3131211271651,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0.348631135379878,0.241718899183244,0,0.552485933615378,0.114814448164607,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.309123034943167,0.183138929636687,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0.382838137483752,0,0,0.62962469366128,0,0,0,0,0,0,0,0.316379424718726,0.190630193923825,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0,0.670302275535787,0,0.282431402330337,0,0,0,0.229723400206959,0,0,0,0.238231775457789,0.411362273086194,0,0.540031437238115,0,0,0,0.245040215981032,0.371606350251437,0,0.640276590135727,0.318852545457645,0.59873811429845,0,0.423347165447766,0,0,0,0,5.01268954180134,0.169291777801603,0,0.201799707191048,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0.18714054040822,0.879049075631364,0.121360521749513,0,0,0.47748896947538,0,0,0,1.26602474769461,0.111308705022906,0,1.26675244876796,4.18420775327246,0,0.755798243562828,0,0.246169610922139,0,0,0,0.511572370226872,2.76201535783414,0,0,0.969332746095218,0.463840490809256,0,0,0.262379999988587,0,0,0.254253650292766,1.18193840883968,0.344743373241465,0.291604613383254,0.347249989866585,0.885741385813839,1.08536794762867,0,2.76448149828062,1.18219047581419,0.438770794307945,0,0,1.53900517007594,0.113942055847001,0,0.179515288819544,0.217294743844016,0,0,0,0,0.156980256395025,0.332423363800313,0,0,0,0,0.317873157960757,0,0.163232808159148,0.141353071433941,0.216388639742091,0,0.176915129006678,0,1.18608451472249,0.247127877893006,0.313265848516366,0.337005664903385,0,0,0.182454789215666,0,0.242780379534093,1.18375320854817,0,0.91821828489147,0.379119477770928,0.150323419414493,0.518440956986236,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,1.7472666824203,1.0319161948297,0,0,0.0821154570532092,0.0969890164884194,0.176512253383001,0.225980740780532,0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| ||
|short_description=p@chr19:54063237..54063327,+ | |||
}} | }} |
Latest revision as of 17:00, 27 July 2015
Short description: | p@chr19:54063237..54063327, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54063237..54063327, + |
Coexpression cluster: | C437_CD4_CD8_Natural_CD19_thyroid_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.76e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 8.22e-15 | 120 |
nongranular leukocyte | 2.10e-13 | 115 |
granulocyte monocyte progenitor cell | 1.16e-11 | 67 |
hematopoietic stem cell | 7.28e-11 | 168 |
defensive cell | 3.37e-10 | 48 |
phagocyte | 3.37e-10 | 48 |
hematopoietic cell | 3.53e-10 | 177 |
classical monocyte | 4.51e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.51e-10 | 42 |
CD4-positive, alpha-beta T cell | 5.97e-10 | 6 |
myeloid lineage restricted progenitor cell | 6.36e-10 | 66 |
hematopoietic oligopotent progenitor cell | 1.15e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.15e-09 | 161 |
myeloid leukocyte | 2.69e-09 | 72 |
macrophage dendritic cell progenitor | 3.09e-09 | 61 |
monopoietic cell | 7.04e-08 | 59 |
monocyte | 7.04e-08 | 59 |
monoblast | 7.04e-08 | 59 |
promonocyte | 7.04e-08 | 59 |
mature alpha-beta T cell | 1.05e-07 | 18 |
alpha-beta T cell | 1.05e-07 | 18 |
immature T cell | 1.05e-07 | 18 |
mature T cell | 1.05e-07 | 18 |
immature alpha-beta T cell | 1.05e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.67e-13 | 114 |
neural tube | 3.29e-10 | 56 |
neural rod | 3.29e-10 | 56 |
future spinal cord | 3.29e-10 | 56 |
neural keel | 3.29e-10 | 56 |
bone marrow | 3.55e-10 | 76 |
hematopoietic system | 9.81e-10 | 98 |
blood island | 9.81e-10 | 98 |
bone element | 1.50e-09 | 82 |
neurectoderm | 4.55e-09 | 86 |
regional part of nervous system | 5.45e-09 | 53 |
regional part of brain | 5.45e-09 | 53 |
regional part of forebrain | 1.26e-08 | 41 |
forebrain | 1.26e-08 | 41 |
anterior neural tube | 1.26e-08 | 41 |
future forebrain | 1.26e-08 | 41 |
neural plate | 2.22e-08 | 82 |
presumptive neural plate | 2.22e-08 | 82 |
hemolymphoid system | 5.26e-08 | 108 |
skeletal element | 5.36e-08 | 90 |
diencephalon | 1.09e-07 | 7 |
future diencephalon | 1.09e-07 | 7 |
immune system | 1.66e-07 | 93 |
gland of diencephalon | 3.58e-07 | 4 |
neuroendocrine gland | 3.58e-07 | 4 |
skeletal system | 4.46e-07 | 100 |