FF:11389-118C3: Difference between revisions

Latest revision as of 17:57, 4 June 2020

Name:	Macrophage - monocyte derived, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12003
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	57 years old adult
sex	female
age	57
cell type	macrophage
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	Mac724
catalog number	3H100-80-10
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005152

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12003		CAGE		DRX008324		DRR009196

Accession ID Hg19

Library id		BAM		CTSS
CNhs12003		DRZ000621		DRZ002006

Accession ID Hg38

Library id		BAM		CTSS
CNhs12003		DRZ011971		DRZ013356

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005152

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10006.GTTTCG		sRNA-Seq		DRX037086		DRR041452

Accession ID Hg19

Library id		BAM		CTSS
SRhi10006.GTTTCG		DRZ007094

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0579
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0663
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.181
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0602
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.749
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0274
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0.76
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0196
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-8.163487e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.136
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.737
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0602
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.162
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.266
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.113
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.584
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.31
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0687
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0202
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.14
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.743
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.976
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.489
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.396
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0.113
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.255
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.113
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.421
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.786
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12003

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00129
MA0003.1	MA0003.1	0.105
MA0004.1	MA0004.1	0.321
MA0006.1	MA0006.1	0.328
MA0007.1	MA0007.1	0.027
MA0009.1	MA0009.1	0.674
MA0014.1	MA0014.1	0.0631
MA0017.1	MA0017.1	2.64892e-4
MA0018.2	MA0018.2	0.00324
MA0019.1	MA0019.1	0.453
MA0024.1	MA0024.1	0.247
MA0025.1	MA0025.1	0.992
MA0027.1	MA0027.1	0.828
MA0028.1	MA0028.1	0.906
MA0029.1	MA0029.1	0.882
MA0030.1	MA0030.1	0.00235
MA0031.1	MA0031.1	0.0417
MA0035.2	MA0035.2	0.655
MA0038.1	MA0038.1	0.445
MA0039.2	MA0039.2	0.0163
MA0040.1	MA0040.1	0.88
MA0041.1	MA0041.1	0.288
MA0042.1	MA0042.1	0.562
MA0043.1	MA0043.1	0.0488
MA0046.1	MA0046.1	0.463
MA0047.2	MA0047.2	0.62
MA0048.1	MA0048.1	0.319
MA0050.1	MA0050.1	3.85709e-4
MA0051.1	MA0051.1	0.0213
MA0052.1	MA0052.1	0.263
MA0055.1	MA0055.1	0.961
MA0057.1	MA0057.1	0.311
MA0058.1	MA0058.1	0.0307
MA0059.1	MA0059.1	0.167
MA0060.1	MA0060.1	0.0165
MA0061.1	MA0061.1	0.209
MA0062.2	MA0062.2	0.00302
MA0065.2	MA0065.2	0.00292
MA0066.1	MA0066.1	0.163
MA0067.1	MA0067.1	0.483
MA0068.1	MA0068.1	0.00443
MA0069.1	MA0069.1	0.19
MA0070.1	MA0070.1	0.56
MA0071.1	MA0071.1	0.0982
MA0072.1	MA0072.1	0.778
MA0073.1	MA0073.1	0.138
MA0074.1	MA0074.1	0.0907
MA0076.1	MA0076.1	0.957
MA0077.1	MA0077.1	0.669
MA0078.1	MA0078.1	0.617
MA0079.2	MA0079.2	0.0579
MA0080.2	MA0080.2	9.78276e-17
MA0081.1	MA0081.1	4.45831e-4
MA0083.1	MA0083.1	0.0318
MA0084.1	MA0084.1	0.0253
MA0087.1	MA0087.1	0.681
MA0088.1	MA0088.1	0.144
MA0090.1	MA0090.1	0.0142
MA0091.1	MA0091.1	0.132
MA0092.1	MA0092.1	0.171
MA0093.1	MA0093.1	0.194
MA0099.2	MA0099.2	0.1
MA0100.1	MA0100.1	0.711
MA0101.1	MA0101.1	0.774
MA0102.2	MA0102.2	0.217
MA0103.1	MA0103.1	0.709
MA0104.2	MA0104.2	0.663
MA0105.1	MA0105.1	0.14
MA0106.1	MA0106.1	0.502
MA0107.1	MA0107.1	0.581
MA0108.2	MA0108.2	0.00646
MA0111.1	MA0111.1	0.23
MA0112.2	MA0112.2	7.7328e-4
MA0113.1	MA0113.1	0.356
MA0114.1	MA0114.1	0.00365
MA0115.1	MA0115.1	0.256
MA0116.1	MA0116.1	0.00167
MA0117.1	MA0117.1	0.824
MA0119.1	MA0119.1	0.753
MA0122.1	MA0122.1	0.46
MA0124.1	MA0124.1	0.312
MA0125.1	MA0125.1	0.614
MA0131.1	MA0131.1	0.253
MA0135.1	MA0135.1	0.0614
MA0136.1	MA0136.1	5.15171e-12
MA0137.2	MA0137.2	0.269
MA0138.2	MA0138.2	0.72
MA0139.1	MA0139.1	0.942
MA0140.1	MA0140.1	0.421
MA0141.1	MA0141.1	0.00407
MA0142.1	MA0142.1	0.579
MA0143.1	MA0143.1	0.249
MA0144.1	MA0144.1	0.0483
MA0145.1	MA0145.1	0.0776
MA0146.1	MA0146.1	0.00443
MA0147.1	MA0147.1	0.951
MA0148.1	MA0148.1	0.252
MA0149.1	MA0149.1	0.124
MA0150.1	MA0150.1	0.0611
MA0152.1	MA0152.1	0.143
MA0153.1	MA0153.1	0.00598
MA0154.1	MA0154.1	0.0112
MA0155.1	MA0155.1	0.712
MA0156.1	MA0156.1	2.43781e-7
MA0157.1	MA0157.1	0.318
MA0159.1	MA0159.1	0.0197
MA0160.1	MA0160.1	0.00348
MA0162.1	MA0162.1	0.967
MA0163.1	MA0163.1	0.00916
MA0164.1	MA0164.1	0.775
MA0258.1	MA0258.1	0.0104
MA0259.1	MA0259.1	0.307

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12003

Novel motif	Logo	P-value
1	1	0.114
10	10	0.0414
100	100	0.865
101	101	0.28
102	102	0.25
103	103	0.16
104	104	0.491
105	105	0.808
106	106	0.0768
107	107	0.332
108	108	0.759
109	109	0.0057
11	11	0.0901
110	110	0.226
111	111	0.0302
112	112	0.111
113	113	0.416
114	114	0.0617
115	115	0.712
116	116	0.514
117	117	0.0415
118	118	0.245
119	119	0.188
12	12	0.5
120	120	0.538
121	121	0.594
122	122	0.553
123	123	0.72
124	124	0.631
125	125	0.0604
126	126	0.189
127	127	0.0863
128	128	0.093
129	129	0.541
13	13	0.0238
130	130	0.802
131	131	0.695
132	132	0.63
133	133	0.925
134	134	0.561
135	135	0.162
136	136	0.159
137	137	0.0169
138	138	0.288
139	139	0.144
14	14	0.387
140	140	0.401
141	141	0.516
142	142	0.373
143	143	0.469
144	144	0.376
145	145	0.681
146	146	0.977
147	147	0.135
148	148	0.0633
149	149	0.405
15	15	0.137
150	150	0.42
151	151	0.724
152	152	0.0227
153	153	0.217
154	154	0.979
155	155	0.142
156	156	0.421
157	157	0.785
158	158	0.995
159	159	0.367
16	16	0.127
160	160	0.542
161	161	0.666
162	162	0.781
163	163	0.679
164	164	0.137
165	165	0.386
166	166	0.599
167	167	0.565
168	168	0.7
169	169	0.00491
17	17	0.166
18	18	0.31
19	19	0.15
2	2	0.809
20	20	0.867
21	21	0.141
22	22	0.0991
23	23	0.368
24	24	0.0166
25	25	0.575
26	26	0.0159
27	27	0.121
28	28	0.557
29	29	0.127
3	3	0.0545
30	30	0.831
31	31	0.737
32	32	0.729
33	33	0.382
34	34	0.178
35	35	0.917
36	36	0.386
37	37	0.147
38	38	0.0744
39	39	0.973
4	4	0.689
40	40	0.117
41	41	0.172
42	42	0.772
43	43	0.107
44	44	0.0034
45	45	0.722
46	46	0.187
47	47	0.394
48	48	0.24
49	49	0.311
5	5	0.761
50	50	0.922
51	51	0.567
52	52	0.283
53	53	0.353
54	54	0.373
55	55	0.164
56	56	0.701
57	57	0.9
58	58	0.162
59	59	0.0751
6	6	0.105
60	60	0.119
61	61	0.217
62	62	0.0935
63	63	0.537
64	64	0.252
65	65	0.0562
66	66	0.946
67	67	0.292
68	68	0.993
69	69	0.466
7	7	0.275
70	70	0.086
71	71	0.0564
72	72	0.332
73	73	0.00288
74	74	0.706
75	75	0.0327
76	76	0.616
77	77	0.178
78	78	0.0669
79	79	0.199
8	8	0.12
80	80	0.378
81	81	0.258
82	82	0.394
83	83	0.95
84	84	0.476
85	85	0.0249
86	86	0.0951
87	87	0.00767
88	88	0.262
89	89	0.113
9	9	0.16
90	90	0.115
91	91	0.724
92	92	0.247
93	93	0.89
94	94	0.249
95	95	0.0272
96	96	0.247
97	97	0.955
98	98	0.501
99	99	0.886

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12003

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000086 human macrophage sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000086 (human macrophage sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005152
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000235,CL:0000037,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002009,CL:0000040,CL:0000559
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005152
+|accession_numbers=CAGE;DRX008324;DRR009196;DRZ000621;DRZ002006;DRZ011971;DRZ013356
+|accession_numbers_RNASeq=sRNA-Seq;DRX037086;DRR041452;DRZ007094
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000086
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.71!510.99!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.51!320.15!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.35!220.72!ZNF385A;;chr11:47279504..47279563,+!p1@NR1H3!2.10!271.55!NR1H3;;chr11:47400062..47400077,-!p2@SPI1!2.02!102.70!SPI1;;chr7:115670804..115670825,-!p1@TFEC!1.98!94.08!TFEC;;chr16:85932760..85932775,+!p1@IRF8!1.86!70.90!IRF8;;chr20:39317868..39317884,-!p1@MAFB!1.71!561.53!MAFB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.70!49.20!ZBED1;;chr10:31288398..31288455,-!p2@ZNF438!1.63!47.86!ZNF438;;chr10:64576105..64576133,-!p1@EGR2!1.54!67.48!EGR2;;chr11:47399996..47400014,-!p4@SPI1!1.53!32.85!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!1.52!129.46!CEBPA;;chr7:137620684..137620711,-!p4@CREB3L2!1.51!31.66!CREB3L2;;chr7:128577972..128578047,+!p1@IRF5!1.48!45.33!IRF5;;chr11:47399947..47399961,-!p3@SPI1!1.47!28.39!SPI1;;chr7:137620650..137620677,-!p3@CREB3L2!1.43!25.86!CREB3L2;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.27!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.40!23.93!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.39!132.88!NCOA4;;chr14:75988771..75988826,+!p1@BATF!1.30!25.27!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.29!18.58!ZNF438;;chr3:12330560..12330579,+!p1@PPARG!1.27!20.21!PPARG;;chr11:47400045..47400060,-!p6@SPI1!1.27!17.69!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.22!15.46!PLEK;;chr2:145277640..145277771,-!p1@ZEB2!1.21!202.14!ZEB2;;chr8:72756063..72756125,-!p1@MSC!1.20!30.02!MSC;;chr2:145277882..145277967,-!p3@ZEB2!1.20!25.56!ZEB2;;chr3:69788576..69788648,+!p1@MITF!1.17!72.98!MITF;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.82!ZNF366;;chr12:26277956..26277980,-!p1@BHLHE41!1.13!45.33!BHLHE41;;chr16:79634624..79634642,-!p1@MAF!1.11!46.82!MAF;;chr7:50343634..50343717,+!p2@IKZF1!1.11!11.89!IKZF1;;chr12:12764995..12765017,+!p3@CREBL2!1.10!16.50!CREBL2;;chr19:13213662..13213686,-!p1@LYL1!1.09!16.65!LYL1;;chr19:50432132..50432217,+!p2@ATF5!1.04!11.89!ATF5;;chr6:44233252..44233296,-!p1@NFKBIE!0.98!85.76!NFKBIE;;chr19:13213954..13214021,-!p4@LYL1!0.98!8.62!LYL1;;chr2:70142232..70142251,+!p1@MXD1!0.96!47.12!MXD1;;chr10:64018918..64018936,+!p2@ZNF365!0.95!7.88!ZNF365;;chr17:40440481..40440550,+!p1@STAT5A!0.92!54.55!STAT5A;;chr12:12764947..12764986,+!p2@CREBL2!0.92!14.57!CREBL2;;chr19:13213704..13213726,-!p3@LYL1!0.91!9.51!LYL1;;chr1:158985493..158985535,+!p4@IFI16!0.88!10.40!IFI16;;chr12:26277929..26277955,-!p3@BHLHE41!0.88!9.51!BHLHE41;;chr1:23857698..23857733,-!p1@E2F2!0.86!11.74!E2F2;;chr6:144385698..144385742,-!p2@PLAGL1!0.85!7.58!PLAGL1;;chr11:47279568..47279577,+!p8@NR1H3!0.85!6.09!NR1H3;;chr1:212738742..212738755,+!p2@ATF3!0.84!5.95!ATF3;;chr11:128563948..128564003,+!p1@FLI1!0.83!75.36!FLI1;;chr10:51572339..51572376,+!p4@NCOA4!0.83!13.53!NCOA4;;chr7:149470641..149470694,-!p1@ZNF467!0.82!27.05!ZNF467;;chr18:6414884..6414942,-!p1@L3MBTL4!0.82!7.13!L3MBTL4;;chr11:47399920..47399931,-!p7@SPI1!0.82!5.65!SPI1;;chr7:139762641..139762768,-!p1@PARP12!0.79!77.44!PARP12;;chr9:137217986..137218049,+!p3@RXRA!0.78!15.61!RXRA;;chr20:48807456..48807475,+!p3@CEBPB!0.78!10.26!CEBPB;;chr8:53373491..53373506,-!p4@ST18!0.78!5.05!ST18;;chr2:231090433..231090469,+!p1@SP140!0.78!5.05!SP140;;chr19:42636586..42636607,-!p1@POU2F2!0.77!14.57!POU2F2;;chr16:79634595..79634620,-!p2@MAF!0.77!9.51!MAF;;chr1:212782094..212782109,+!p1@ATF3!0.76!144.32!ATF3;;chr2:145275162..145275202,-!p2@ZEB2!0.76!30.92!ZEB2;;chr10:94449703..94449718,+!p1@HHEX!0.76!20.07!HHEX;;chr11:65554528..65554546,+!p1@OVOL1!0.76!4.76!OVOL1;;chr7:115670792..115670797,-!p2@TFEC!0.76!4.76!TFEC;;chr5:142814364..142814381,-!p22@NR3C1!0.75!4.61!NR3C1;;chr8:72756213..72756243,-!p5@MSC!0.74!5.95!MSC;;chr19:10416315..10416333,-!p1@ZGLP1!0.74!4.46!ZGLP1;;chr13:41593425..41593480,-!p1@ELF1!0.73!30.92!ELF1;;chr2:113999360..113999386,-!p4@PAX8!0.73!4.31!PAX8;;chr18:52989031..52989079,-!p2@TCF4!0.72!10.85!TCF4;;chr19:35759824..35759891,+!p1@USF2!0.71!144.77!USF2;;chr2:231090344..231090361,-!p3@SP110!0.71!4.16!SP110;;chr11:47279491..47279502,+!p6@NR1H3!0.71!4.16!NR1H3;;chr12:26277817..26277863,-!p2@BHLHE41!0.69!5.50!BHLHE41;;chr16:88752889..88752921,-!p1@SNAI3!0.69!4.61!SNAI3;;chr6:41691289..41691312,-!p9@TFEB!0.69!3.86!TFEB;;chr16:31885093..31885165,+!p1@ZNF267!0.68!67.33!ZNF267;;chrX:131623044..131623089,-!p1@MBNL3!0.68!17.69!MBNL3;;chr19:36391434..36391450,-!p1@NFKBID!0.68!8.17!NFKBID;;chr20:48807351..48807384,+!p1@CEBPB!0.67!441.29!CEBPB;;chr3:48282587..48282603,+!p1@ZNF589!0.67!18.58!ZNF589;;chr6:35310395..35310410,+!p2@PPARD!0.67!16.35!PPARD;;chr12:54778351..54778378,-!p6@ZNF385A!0.67!3.72!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!0.67!3.72!TFCP2L1;;chr8:72756267..72756296,-!p4@MSC!0.66!5.50!MSC;;chr6:152011654..152011682,+!p1@ESR1!0.66!3.57!ESR1;;chr3:129158715..129158766,-!p2@MBD4!0.65!38.94!MBD4;;chr6:35310363..35310382,+!p3@PPARD!0.65!14.71!PPARD;;chr19:926001..926046,+!p1@ARID3A!0.65!13.82!ARID3A;;chr10:35484804..35484902,+!p2@CREM!0.64!14.86!CREM;;chr8:116680215..116680245,-!p6@TRPS1!0.64!5.65!TRPS1;;chr19:45252008..45252024,+!p2@BCL3!0.63!12.34!BCL3;;chr2:208031943..208031978,-!p5@KLF7!0.63!4.61!KLF7;;chr1:8484007..8484061,-!p13@RERE!0.63!4.31!RERE;;chr22:38609611..38609624,+!p5@MAFF!0.63!3.27!MAFF;;chr16:67198683..67198698,+!p2@HSF4!0.63!3.27!HSF4;;chr8:102216978..102217003,-!p4@ZNF706!0.63!3.27!ZNF706;;chr19:49140609..49140643,-!p1@DBP!0.62!21.25!DBP;;chr1:40367530..40367597,-!p1@MYCL1!0.62!6.24!MYCL1;;chr19:50432104..50432126,+!p6@ATF5!0.62!3.12!ATF5;;chr16:88752861..88752884,-!p2@SNAI3!0.62!3.12!SNAI3;;chr16:79633894..79633954,-!p3@MAF!0.61!6.54!MAF;;chr1:158979872..158979898,+!p3@IFI16!0.60!10.70!IFI16;;chr10:94449675..94449694,+!p2@HHEX!0.60!9.22!HHEX;;chr5:142814347..142814358,-!p27@NR3C1!0.60!2.97!NR3C1;;chr6:41673552..41673571,-!p10@TFEB!0.60!2.97!TFEB;;chr21:36421535..36421610,-!p2@RUNX1!0.59!12.04!RUNX1;;chr2:185463247..185463263,+!p1@ZNF804A!0.59!5.65!ZNF804A;;chr13:27998831..27998851,+!p2@GTF3A!0.58!20.36!GTF3A;;chr8:72756667..72756736,-!p2@MSC!0.58!4.76!MSC;;chr2:97202480..97202499,+!p1@ARID5A!0.57!33.74!ARID5A;;chr5:88178983..88179012,-!p1@MEF2C!0.57!25.71!MEF2C;;chr12:11802753..11802834,+!p2@ETV6!0.57!16.20!ETV6;;chr3:187463179..187463201,-!p2@BCL6!0.57!13.38!BCL6;;chr16:73092791..73092831,-!p4@ZFHX3!0.57!5.50!ZFHX3;;chr16:67198633..67198671,+!p1@HSF4!0.57!2.68!HSF4;;chr7:139762438..139762447,-!p4@PARP12!0.57!2.68!PARP12;;chr5:142784003..142784065,-!p2@NR3C1!0.56!26.75!NR3C1;;chr2:238600789..238600925,+!p1@LRRFIP1!0.55!64.80!LRRFIP1;;chr2:61108695..61108753,+!p1@REL!0.55!21.85!REL;;chr1:38325256..38325280,-!p1@MTF1!0.55!19.62!MTF1;;chr12:48298785..48298828,-!p1@VDR!0.55!16.65!VDR;;chr15:31619535..31619569,+!p5@KLF13!0.55!5.35!KLF13;;chr22:38609570..38609585,+!p6@MAFF!0.55!2.53!MAFF;;chr7:50344251..50344288,+!p3@IKZF1!0.55!2.53!IKZF1;;chr6:34204973..34204990,+!p4@HMGA1!0.54!41.62!HMGA1;;chr14:21566731..21566836,-!p1@ZNF219!0.54!33.74!ZNF219;;chr5:176738887..176738934,-!p1@MXD3!0.54!20.51!MXD3;;chr6:15246200..15246214,+!p2@JARID2!0.54!8.17!JARID2;;chr10:35484053..35484076,+!p1@CREM!0.54!7.28!CREM;;chr19:926055..926068,+!p2@ARID3A!0.54!6.24!ARID3A;;chr2:28618532..28618610,+!p4@FOSL2!0.54!4.76!FOSL2;;chr18:52989081..52989117,-!p7@TCF4!0.54!4.16!TCF4;;chr14:68283291..68283323,-!p1@ZFYVE26!0.53!50.98!ZFYVE26;;chr16:68119324..68119364,+!p1@NFATC3!0.53!13.38!NFATC3;;chr9:137218362..137218385,+!p4@RXRA!0.53!7.58!RXRA;;chr16:68118689..68118733,+!p3@NFATC3!0.53!7.13!NFATC3;;chr8:72756023..72756055,-!p6@MSC!0.53!3.12!MSC;;chr16:31141328..31141350,+!p2@KAT8!0.53!2.38!KAT8;;chr18:45935720..45935772,-!p1@ZBTB7C!0.53!2.38!ZBTB7C;;chr2:145277589..145277612,-!p12@ZEB2!0.53!2.38!ZEB2;;chr2:145277792..145277808,-!p15@ZEB2!0.53!2.38!ZEB2;;chr3:185826855..185826911,-!p1@ETV5!0.52!82.94!ETV5;;chr6:7108569..7108683,+!p3@RREB1!0.52!11.30!RREB1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.52!8.17!ZBTB7A;;chr6:7108855..7108903,+!p5@RREB1!0.52!6.09!RREB1;;chr15:100106670..100106697,+!p4@MEF2A!0.52!4.31!MEF2A;;chr1:41157641..41157665,+!p7@NFYC!0.52!3.12!NFYC;;chr15:90544532..90544563,+!p1@ZNF710!0.51!5.20!ZNF710;;chr2:231090471..231090504,+!p2@SP140!0.51!2.23!SP140;;chr19:49140572..49140594,-!p2@DBP!0.50!3.86!DBP;;chr17:40440225..40440268,+!p3@STAT5A!0.50!2.97!STAT5A;;chrX:129244454..129244488,-!p1@ELF4!0.49!19.92!ELF4;;chr10:104155480..104155534,+!p2@NFKB2!0.49!17.69!NFKB2;;chr1:161736140..161736151,+!p3@ATF6!0.49!8.17!ATF6;;chr2:145275211..145275220,-!p14@ZEB2!0.49!2.68!ZEB2;;chr2:145275982..145276003,-!p7@ZEB2!0.49!2.08!ZEB2;;chr2:185463521..185463557,+!p3@ZNF804A!0.49!2.08!ZNF804A;;chr3:187455680..187455700,-!p4@BCL6!0.49!2.08!BCL6;;chr8:102216925..102216938,-!p7@ZNF706!0.49!2.08!ZNF706;;chr19:13213399..13213414,-!p6@LYL1!0.49!2.08!LYL1;;chr8:116681194..116681214,-!p1@TRPS1!0.48!25.42!TRPS1;;chr7:99156393..99156433,+!p6@ZNF655!0.48!5.50!ZNF655;;chrX:48900782..48900793,-!p3@TFE3!0.48!4.46!TFE3;;chr5:88179195..88179224,-!p3@MEF2C!0.48!3.72!MEF2C;;chr8:72756637..72756664,-!p3@MSC!0.48!2.38!MSC;;chr3:129158768..129158819,-!p1@MBD4!0.47!40.87!MBD4;;chr4:106068026..106068084,+!p1@TET2!0.47!23.63!TET2;;chr13:27998854..27998866,+!p3@GTF3A!0.47!4.76!GTF3A;;chr5:142782823..142782854,-!p3@NR3C1!0.47!3.12!NR3C1;;chr1:38325227..38325246,-!p2@MTF1!0.47!2.97!MTF1;;chr10:104155659..104155676,+!p4@NFKB2!0.47!2.68!NFKB2;;chr10:31288329..31288353,-!p7@ZNF438!0.47!1.93!ZNF438;;chr2:169312350..169312362,+!p4@CERS6!0.47!1.93!CERS6;;chr2:185463158..185463181,+!p2@ZNF804A!0.47!1.93!ZNF804A;;chr15:90545434..90545449,+!p9@ZNF710!0.47!1.93!ZNF710;;chr16:79634581..79634592,-!p4@MAF!0.47!1.93!MAF;;chr1:156470515..156470542,-!p2@MEF2D!0.46!13.08!MEF2D;;chr6:41703296..41703367,-!p1@TFEB!0.46!12.78!TFEB;;chr2:61108650..61108687,+!p2@REL!0.46!12.19!REL;;chr5:88179017..88179046,-!p2@MEF2C!0.46!9.81!MEF2C;;chr14:89883412..89883478,-!p3@FOXN3!0.46!7.73!FOXN3;;chr17:61920116..61920131,-!p5@SMARCD2!0.46!4.46!SMARCD2;;chr20:48807648..48807671,+!p9@CEBPB!0.46!3.12!CEBPB;;chr18:77160282..77160343,+!p2@NFATC1!0.45!15.31!NFATC1;;chr17:41277372..412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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000235;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor3.CNhs12003.11389-118C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11389-118C3
 |is_a=EFO:0002091;;FF:0000086
 |is_obsolete=
+|library_id=CNhs12003
+|library_id_phase_based=2:CNhs12003
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11389
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTTTCG.11389
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11389
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTTTCG.11389
 |name=Macrophage - monocyte derived, donor3
 |namespace=FANTOM5
@@ Line 44: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12003,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10006,,,
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 |rna_box=118
 |rna_catalog_number=3H100-80-10
@@ Line 58: / Line 82: @@
 |rna_tube_id=118C3
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10006.GTTTCG
 |sample_age=57
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11389-118C3;search_select_hide=table117:FF:11389-118C3
 }}

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FF:11389-118C3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:57, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0