FF:11214-116A8: Difference between revisions

Latest revision as of 16:24, 3 June 2020

Name:	Mesenchymal stem cells - umbilical, donor0
Species:	Human (Homo sapiens)
Library ID:	CNhs12492
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical cord
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal stem cell
cell line	NA
company	Sciencell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	7535
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005911

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12492		CAGE		DRX008362		DRR009234

Accession ID Hg19

Library id		BAM		CTSS
CNhs12492		DRZ000659		DRZ002044

Accession ID Hg38

Library id		BAM		CTSS
CNhs12492		DRZ012009		DRZ013394

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005911

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.GCCAAT		sRNA-Seq		DRX037230		DRR041596

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.GCCAAT		DRZ007238

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0968
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.412
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.253
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0682
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.313
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.471
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.253
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0918
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.253
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.813
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.024
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.568
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.412
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.722
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.865
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.412
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.412
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12492

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.789
MA0003.1	MA0003.1	0.414
MA0004.1	MA0004.1	0.731
MA0006.1	MA0006.1	0.737
MA0007.1	MA0007.1	0.0524
MA0009.1	MA0009.1	0.815
MA0014.1	MA0014.1	0.918
MA0017.1	MA0017.1	0.0211
MA0018.2	MA0018.2	0.0019
MA0019.1	MA0019.1	0.293
MA0024.1	MA0024.1	0.0342
MA0025.1	MA0025.1	0.00234
MA0027.1	MA0027.1	0.479
MA0028.1	MA0028.1	0.0951
MA0029.1	MA0029.1	0.746
MA0030.1	MA0030.1	0.00181
MA0031.1	MA0031.1	0.0232
MA0035.2	MA0035.2	0.315
MA0038.1	MA0038.1	0.0381
MA0039.2	MA0039.2	0.883
MA0040.1	MA0040.1	0.528
MA0041.1	MA0041.1	0.951
MA0042.1	MA0042.1	0.569
MA0043.1	MA0043.1	0.00858
MA0046.1	MA0046.1	0.764
MA0047.2	MA0047.2	0.983
MA0048.1	MA0048.1	0.147
MA0050.1	MA0050.1	7.91765e-8
MA0051.1	MA0051.1	2.79958e-5
MA0052.1	MA0052.1	0.14
MA0055.1	MA0055.1	7.99598e-4
MA0057.1	MA0057.1	0.371
MA0058.1	MA0058.1	0.822
MA0059.1	MA0059.1	0.0045
MA0060.1	MA0060.1	0.00549
MA0061.1	MA0061.1	0.549
MA0062.2	MA0062.2	0.787
MA0065.2	MA0065.2	0.0169
MA0066.1	MA0066.1	0.0595
MA0067.1	MA0067.1	0.0237
MA0068.1	MA0068.1	0.269
MA0069.1	MA0069.1	0.669
MA0070.1	MA0070.1	0.35
MA0071.1	MA0071.1	0.0581
MA0072.1	MA0072.1	0.961
MA0073.1	MA0073.1	0.769
MA0074.1	MA0074.1	0.192
MA0076.1	MA0076.1	0.509
MA0077.1	MA0077.1	0.287
MA0078.1	MA0078.1	0.634
MA0079.2	MA0079.2	0.142
MA0080.2	MA0080.2	3.94887e-7
MA0081.1	MA0081.1	0.0995
MA0083.1	MA0083.1	0.00991
MA0084.1	MA0084.1	0.109
MA0087.1	MA0087.1	0.944
MA0088.1	MA0088.1	0.0135
MA0090.1	MA0090.1	0.155
MA0091.1	MA0091.1	0.068
MA0092.1	MA0092.1	0.176
MA0093.1	MA0093.1	0.784
MA0099.2	MA0099.2	0.298
MA0100.1	MA0100.1	0.172
MA0101.1	MA0101.1	0.874
MA0102.2	MA0102.2	0.115
MA0103.1	MA0103.1	0.638
MA0104.2	MA0104.2	0.136
MA0105.1	MA0105.1	0.00922
MA0106.1	MA0106.1	0.0401
MA0107.1	MA0107.1	0.562
MA0108.2	MA0108.2	0.00468
MA0111.1	MA0111.1	0.41
MA0112.2	MA0112.2	0.00132
MA0113.1	MA0113.1	0.0441
MA0114.1	MA0114.1	0.0287
MA0115.1	MA0115.1	0.197
MA0116.1	MA0116.1	0.009
MA0117.1	MA0117.1	0.774
MA0119.1	MA0119.1	0.0284
MA0122.1	MA0122.1	0.739
MA0124.1	MA0124.1	0.89
MA0125.1	MA0125.1	0.83
MA0131.1	MA0131.1	0.712
MA0135.1	MA0135.1	0.127
MA0136.1	MA0136.1	8.68068e-4
MA0137.2	MA0137.2	0.895
MA0138.2	MA0138.2	0.171
MA0139.1	MA0139.1	0.426
MA0140.1	MA0140.1	0.0963
MA0141.1	MA0141.1	0.0248
MA0142.1	MA0142.1	0.788
MA0143.1	MA0143.1	0.875
MA0144.1	MA0144.1	0.825
MA0145.1	MA0145.1	0.319
MA0146.1	MA0146.1	0.109
MA0147.1	MA0147.1	0.0655
MA0148.1	MA0148.1	0.575
MA0149.1	MA0149.1	0.239
MA0150.1	MA0150.1	0.829
MA0152.1	MA0152.1	0.59
MA0153.1	MA0153.1	0.557
MA0154.1	MA0154.1	0.0869
MA0155.1	MA0155.1	0.469
MA0156.1	MA0156.1	0.255
MA0157.1	MA0157.1	0.115
MA0159.1	MA0159.1	0.268
MA0160.1	MA0160.1	0.285
MA0162.1	MA0162.1	0.0706
MA0163.1	MA0163.1	2.75043e-7
MA0164.1	MA0164.1	0.447
MA0258.1	MA0258.1	0.0205
MA0259.1	MA0259.1	0.25

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12492

Novel motif	Logo	P-value
1	1	0.0242
10	10	0.12
100	100	0.127
101	101	0.609
102	102	0.693
103	103	0.0626
104	104	0.0553
105	105	0.808
106	106	0.603
107	107	0.233
108	108	0.924
109	109	0.0112
11	11	0.0231
110	110	0.0207
111	111	0.602
112	112	0.844
113	113	0.751
114	114	0.253
115	115	0.743
116	116	0.0139
117	117	0.168
118	118	0.13
119	119	0.429
12	12	0.538
120	120	0.037
121	121	0.805
122	122	0.448
123	123	0.417
124	124	0.94
125	125	0.403
126	126	0.416
127	127	0.0747
128	128	0.405
129	129	0.842
13	13	0.0543
130	130	0.0596
131	131	0.385
132	132	0.654
133	133	0.335
134	134	0.886
135	135	0.729
136	136	0.231
137	137	0.133
138	138	0.0729
139	139	0.811
14	14	0.653
140	140	0.795
141	141	0.809
142	142	0.466
143	143	0.185
144	144	0.754
145	145	0.497
146	146	0.0689
147	147	0.232
148	148	0.11
149	149	0.199
15	15	0.23
150	150	0.583
151	151	0.623
152	152	0.43
153	153	0.334
154	154	0.667
155	155	0.352
156	156	0.54
157	157	0.859
158	158	0.193
159	159	0.425
16	16	0.0503
160	160	0.0202
161	161	0.329
162	162	0.355
163	163	0.687
164	164	0.255
165	165	0.756
166	166	0.626
167	167	0.226
168	168	0.514
169	169	0.0335
17	17	0.242
18	18	0.288
19	19	0.144
2	2	0.778
20	20	0.986
21	21	0.64
22	22	0.293
23	23	0.947
24	24	0.0902
25	25	0.635
26	26	0.0129
27	27	0.525
28	28	0.322
29	29	0.0899
3	3	0.0701
30	30	0.902
31	31	0.582
32	32	7.59088e-6
33	33	0.0838
34	34	0.701
35	35	0.581
36	36	0.0644
37	37	0.0435
38	38	0.285
39	39	0.313
4	4	0.818
40	40	0.015
41	41	0.265
42	42	0.259
43	43	0.194
44	44	0.165
45	45	0.91
46	46	0.0513
47	47	0.042
48	48	0.0401
49	49	0.256
5	5	0.819
50	50	0.351
51	51	0.177
52	52	0.518
53	53	0.509
54	54	0.858
55	55	0.93
56	56	0.558
57	57	0.179
58	58	0.879
59	59	0.0817
6	6	0.751
60	60	0.973
61	61	0.234
62	62	0.371
63	63	0.139
64	64	0.0511
65	65	0.158
66	66	0.133
67	67	0.325
68	68	0.865
69	69	0.286
7	7	0.396
70	70	0.344
71	71	0.0121
72	72	0.628
73	73	0.202
74	74	0.465
75	75	0.212
76	76	0.663
77	77	0.102
78	78	0.66
79	79	0.042
8	8	0.0116
80	80	0.94
81	81	0.363
82	82	0.384
83	83	0.0643
84	84	0.275
85	85	0.536
86	86	0.898
87	87	0.244
88	88	0.52
89	89	0.0254
9	9	0.504
90	90	0.705
91	91	0.992
92	92	0.983
93	93	0.591
94	94	0.116
95	95	0.0647
96	96	0.597
97	97	0.834
98	98	0.436
99	99	0.001

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12492

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000094 human mesenchymal stem cell of umbilical cord-Sciencell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005911
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005911
+|accession_numbers=CAGE;DRX008362;DRR009234;DRZ000659;DRZ002044;DRZ012009;DRZ013394
+|accession_numbers_RNASeq=sRNA-Seq;DRX037230;DRR041596;DRZ007238
 |ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.35!221.75!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.59!38.01!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.58!99.79!TWIST1;;chr5:134369905..134369972,-!p1@PITX1!1.58!56.23!PITX1;;chr2:176969228..176969260,+!p1@HOXD11!1.43!26.13!HOXD11;;chr5:134369879..134369898,-!p2@PITX1!1.30!19.01!PITX1;;chr4:174451350..174451363,-!p3@HAND2!1.25!16.63!HAND2;;chr2:5832508..5832524,+!p1@SOX11!1.23!15.84!SOX11;;chr4:111544219..111544240,-!p1@PITX2!1.21!15.05!PITX2;;chr7:35293685..35293718,-!p1@TBX20!1.14!12.67!TBX20;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.14!12.67!HOXC5;;chr12:66218255..66218304,+!p3@HMGA2!1.11!31.68!HMGA2;;chr17:59477233..59477263,+!p1@TBX2!1.10!36.43!TBX2;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.26!FOXF1;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.48!HMGA2;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.09!HAND2;;chr12:115122318..115122331,-!p2@TBX3!1.05!10.30!TBX3;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!52.27!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!1.02!9.50!HOXC9;;chr4:111558135..111558198,-!p2@PITX2!1.02!9.50!PITX2;;chr7:27205136..27205164,-!p1@HOXA9!1.02!9.50!HOXA9;;chr7:19157043..19157088,-!p2@TWIST1!0.97!21.38!TWIST1;;chr19:45260775..45260838,+!p5@BCL3!0.97!11.09!BCL3;;chr19:46801639..46801699,+!p1@HIF3A!0.95!7.92!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!0.95!7.92!HOXC10;;chr17:8027418..8027432,-!p1@HES7!0.95!7.92!HES7;;chr7:27224842..27224872,-!p1@HOXA11!0.95!7.92!HOXA11;;chr7:27205106..27205134,-!p2@HOXA9!0.91!7.13!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!0.91!7.13!HOXC8;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.88!TCF12;;chr12:66218212..66218244,+!p5@HMGA2!0.87!9.50!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.87!6.34!HOXC10;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.34!KDM5D;;chr3:141087393..141087426,+!p3@ZBTB38!0.85!25.34!ZBTB38;;chr14:62213758..62213774,+!p8@HIF1A!0.85!7.92!HIF1A;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.30!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!0.82!26.93!NR2F1;;chr17:41623692..41623715,-!p1@ETV4!0.82!25.34!ETV4;;chr7:27192185..27192209,-!p1@HOXA3!0.82!5.54!HOXA3;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.54!HOXD8;;chr20:42543441..42543497,+!p1@TOX2!0.81!26.13!TOX2;;chr5:176738887..176738934,-!p1@MXD3!0.80!38.01!MXD3;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.42!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.13!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.71!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!0.76!7.13!GATA6;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.75!HOXC10;;chr2:176969179..176969226,+!p2@HOXD11!0.76!4.75!HOXD11;;chr8:48650715..48650735,-!p1@CEBPD!0.75!663.66!CEBPD;;chr14:62162285..62162296,+!p3@HIF1A!0.74!26.13!HIF1A;;chr11:63684602..63684664,-!p1@RCOR2!0.74!9.50!RCOR2;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.93!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.18!TBX3;;chr19:38720294..38720348,-!p1@DPF1!0.73!5.54!DPF1;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.23!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.72!10.30!HOXB2;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.13!ZFP64;;chr11:65686732..65686756,+!p2@DRAP1!0.70!19.01!DRAP1;;chr17:59477275..59477286,+!p3@TBX2!0.70!5.54!TBX2;;chr1:170633262..170633285,+!p3@PRRX1!0.70!4.75!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.70!3.96!HOXB6;;chr12:54422217..54422239,+!p3@HOXC6!0.70!3.96!HOXC6;;chr2:239756739..239756755,+!p2@TWIST2!0.69!7.13!TWIST2;;chr17:41622765..41622821,-!p2@ETV4!0.69!6.34!ETV4;;chr11:120107344..120107351,+!p1@POU2F3!0.68!4.75!POU2F3;;chr14:62162258..62162269,+!p2@HIF1A!0.67!40.39!HIF1A;;chr5:92918894..92918912,+!p2@NR2F1!0.64!12.67!NR2F1;;chr15:83953397..83953425,-!p1@BNC1!0.64!3.96!BNC1;;chr8:72756667..72756736,-!p2@MSC!0.63!5.54!MSC;;chr5:92920456..92920488,+!p9@NR2F1!0.63!3.96!NR2F1;;chr12:115122005..115122016,-!p3@TBX3!0.62!3.96!TBX3;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.17!CREB3L1;;chr12:115121587..115121597,-!p10@TBX3!0.62!3.17!TBX3;;chr12:115121802..115121814,-!p5@TBX3!0.62!3.17!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.62!3.17!TBX3;;chr12:54378984..54378996,+!p7@HOXC10!0.62!3.17!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.17!HOXC10;;chr12:54402790..54402805,+!p2@HOXC8!0.62!3.17!HOXC8;;chr18:3447536..3447542,+!p23@TGIF1!0.62!3.17!TGIF1;;chr19:58740449..58740456,+!p3@ZNF544!0.62!3.17!ZNF544;;chr4:111558118..111558133,-!p5@PITX2!0.62!3.17!PITX2;;chr7:27224795..27224840,-!p2@HOXA11!0.62!3.17!HOXA11;;chr12:7079780..7079791,-!p2@PHB2!0.61!19.01!PHB2;;chr6:45390269..45390298,+!p5@RUNX2!0.61!5.54!RUNX2;;chr6:85473156..85473210,-!p2@TBX18!0.61!3.96!TBX18;;chr14:62162224..62162254,+!p1@HIF1A!0.60!524.27!HIF1A;;chr12:66218183..66218209,+!p4@HMGA2!0.60!6.34!HMGA2;;chr6:45390025..45390076,+!p2@RUNX2!0.59!7.92!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.59!3.96!NFATC2;;chr5:92919375..92919438,+!p6@NR2F1!0.59!3.17!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.30!GATA6;;chr5:92918956..92918969,+!p4@NR2F1!0.58!3.17!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!0.57!3.17!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!0.56!4.75!FOXQ1;;chr6:45296048..45296082,+!p1@RUNX2!0.56!3.17!RUNX2;;chr20:42543506..42543549,+!p2@TOX2!0.55!7.13!TOX2;;chr19:45261550..45261641,+!p6@BCL3!0.55!4.75!BCL3;;chr18:47814010..47814021,-!p3@CXXC1!0.55!4.75!CXXC1;;chr19:22817119..22817145,+!p1@ZNF492!0.55!4.75!ZNF492;;chr17:41623075..41623101,-!p9@ETV4!0.55!3.17!ETV4;;chr11:19263160..19263176,-!p1@E2F8!0.55!3.17!E2F8;;chr16:8962853..8962878,-!p1@CARHSP1!0.54!183.73!CARHSP1;;chr3:141087339..141087387,+!p2@ZBTB38!0.54!31.68!ZBTB38;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.34!GLI2;;chr17:59477197..59477212,+!p2@TBX2!0.54!4.75!TBX2;;chr5:92919100..92919135,+!p3@NR2F1!0.54!3.17!NR2F1;;chr8:72756063..72756125,-!p1@MSC!0.53!5.54!MSC;;chr19:19617430..19617443,+!p9@GATAD2A!0.53!5.54!GATAD2A;;chr12:3068501..3068515,+!p4@TEAD4!0.53!4.75!TEAD4;;chr12:66218573..66218596,+!p7@HMGA2!0.53!3.96!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.53!3.96!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.53!2.38!ETV4;;chr18:19749504..19749515,+!p5@GATA6!0.53!2.38!GATA6;;chr11:65688877..65688891,+!p13@DRAP1!0.53!2.38!DRAP1;;chr11:76092029..76092038,-!p4@PRKRIR!0.53!2.38!PRKRIR;;chr12:115121770..115121781,-!p4@TBX3!0.53!2.38!TBX3;;chr12:54366975..54367001,+!p1@HOXC11!0.53!2.38!HOXC11;;chr12:54394059..54394088,+!p3@HOXC9!0.53!2.38!HOXC9;;chr12:54426831..54426836,+!p10@HOXC5!0.53!2.38!HOXC5;;chr14:62214151..62214164,+!p11@HIF1A!0.53!2.38!HIF1A;;chr7:27213893..27213954,-!p1@HOXA10!0.53!2.38!HOXA10;;chr7:27239703..27239715,-!p1@HOXA13!0.53!2.38!HOXA13;;chr7:27239740..27239759,-!p2@HOXA13!0.53!2.38!HOXA13;;chr4:111544254..111544270,-!p3@PITX2!0.53!2.38!PITX2;;chr17:41277372..41277418,-!p1@BRCA1!0.52!10.30!BRCA1;;chr12:66218378..66218401,+!p6@HMGA2!0.52!3.96!HMGA2;;chr15:37391588..37391604,-!p11@MEIS2!0.52!3.17!MEIS2;;chr9:73028814..73028895,-!p1@KLF9!0.51!28.51!KLF9;;chr18:3448455..3448480,+!p5@TGIF1!0.51!4.75!TGIF1;;chr6:45390300..45390335,+!p4@RUNX2!0.51!3.96!RUNX2;;chr2:46612334..46612349,+!p6@EPAS1!0.51!3.17!EPAS1;;chr17:47492236..47492251,-!p1@PHB!0.50!39.60!PHB;;chr20:48599506..48599526,+!p1@SNAI1!0.50!18.21!SNAI1;;chr11:65687362..65687436,+!p3@DRAP1!0.50!12.67!DRAP1;;chr4:56412978..56413003,-!p1@CLOCK!0.50!6.34!CLOCK;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.50!5.54!SOHLH2;;chr17:41623009..41623053,-!p4@ETV4!0.50!3.96!ETV4;;chr17:42295897..42295953,-!p10@UBTF!0.50!3.17!UBTF;;chr1:8926369..8926385,-!p12@ENO1!0.50!3.17!ENO1;;chr12:66218152..66218174,+!p10@HMGA2!0.50!2.38!HMGA2;;chr6:144329384..144329405,-!p1@PLAGL1!0.49!32.47!PLAGL1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!30.89!TAX1BP3;;chr1:8934931..8934947,-!p4@ENO1!0.49!8.71!ENO1;;chr16:86600426..86600441,+!p1@FOXC2!0.49!6.34!FOXC2;;chr16:29818199..29818216,+!p11@MAZ!0.49!3.96!MAZ;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.49!3.96!PCBP2;;chr15:37390482..37390572,-!p7@MEIS2!0.49!3.17!MEIS2;;chr9:73028598..73028617,-!p5@KLF9!0.48!3.96!KLF9;;chr14:62213827..62213853,+!p6@HIF1A!0.48!3.17!HIF1A;;chr9:77112244..77112262,+!p1@RORB!0.48!2.38!RORB;;chr6:31126291..31126399,+!p1@TCF19!0.47!25.34!TCF19;;chr20:32274179..32274213,-!p1@E2F1!0.47!17.42!E2F1;;chr8:49833948..49833973,-!p2@SNAI2!0.47!16.63!SNAI2;;chr11:65686952..65686975,+!p5@DRAP1!0.47!14.26!DRAP1;;chr20:48807587..48807603,+!p16@CEBPB!0.47!2.38!CEBPB;;chr17:46622205..46622218,-!p3@HOXB2!0.47!2.38!HOXB2;;chr16:2059754..2059777,-!p2@ZNF598!0.46!8.71!ZNF598;;chr12:27485762..27485776,+!p3@ARNTL2!0.46!6.34!ARNTL2;;chr6:85474299..85474324,-!p1@TBX18!0.46!3.96!TBX18;;chr12:2986206..2986258,-!p2@FOXM1!0.45!15.05!FOXM1;;chr11:47270436..47270464,+!p2@NR1H3!0.45!4.75!NR1H3;;chr12:66218003..66218018,+!p9@HMGA2!0.45!2.38!HMGA2;;chr5:150284461..150284481,-!p4@ZNF300!0.45!2.38!ZNF300;;chr1:23885981..23886002,-!p1@ID3!0.44!437.95!ID3;;chr20:42295713..42295738,+!p2@MYBL2!0.44!14.26!MYBL2;;chr1:164528445..164528459,+!p2@PBX1!0.44!7.13!PBX1;;chr17:46655730..46655791,-!p1@HOXB4!0.44!5.54!HOXB4;;chr8:48650982..48651023,-!p3@CEBPD!0.44!5.54!CEBPD;;chr8:72756023..72756055,-!p6@MSC!0.44!2.38!MSC;;chr1:247495210..247495226,-!p4@ZNF496!0.44!2.38!ZNF496;;chr19:10291229..10291247,-!p5@DNMT1!0.44!2.38!DNMT1;;chr2:169312600..169312606,+!p2@CERS6!0.43!3.17!CERS6;;chr12:66218443..66218461,+!p8@HMGA2!0.43!2.38!HMGA2;;chr19:45971246..45971265,+!p1@FOSB!0.42!44.35!FOSB;;chr5:138609782..138609826,+!p5@MATR3!0.42!15.05!MATR3;;chr15:37390850..37390909,-!p3@MEIS2!0.42!3.96!MEIS2;;chrX:119384566..119384585,+!p2@ZBTB33!0.42!3.17!ZBTB33;;chr11:113930291..113930339,+!p2@ZBTB16!0.42!3.17!ZBTB16;;chr11:6947720..6947812,+!p1@ZNF215!0.42!2.38!ZNF215;;chr17:3571863..3571881,-!p1@TAX1BP3!0.41!167.89!TAX1BP3;;chr12:3068544..3068597,+!p1@TEAD4!0.41!13.46!TEAD4;;chr5:137804484..137804498,+!p2@EGR1!0.41!8.71!EGR1;;chr1:153939955..153940009,+!p2@CREB3L4!0.41!4.75!CREB3L4;;chr2:121493492..121493537,+!p2@GLI2!0.41!3.17!GLI2;;chr9:137218262..137218273,+!p5@RXRA!0.41!3.17!RXRA;;chr2: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520stem%2520cells%2520-%2520umbilical%252c%2520donor0.CNhs12492.11214-116A8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11214-116A8
 |is_a=EFO:0002091;;FF:0000094
 |is_obsolete=
+|library_id=CNhs12492
+|library_id_phase_based=2:CNhs12492
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11214
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GCCAAT.11214
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11214
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GCCAAT.11214
 |name=Mesenchymal stem cells - umbilical, donor0
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12492,LSID916,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=116
 |rna_catalog_number=7535
@@ Line 60: / Line 82: @@
 |rna_tube_id=116A8
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10014.GCCAAT
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11214-116A8;search_select_hide=table117:FF:11214-116A8
 }}

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FF:11214-116A8: Difference between revisions

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Latest revision as of 16:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0