FFCP PHASE1:Hg19::chr19:50993092..50993120,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:50993092..50993120,- | |||
|description=CAGE_peak_at_chr19:50993092..50993120,- | |description=CAGE_peak_at_chr19:50993092..50993120,- | ||
|id=chr19:50993092..50993120,- | |id=chr19:50993092..50993120,- | ||
|ontology_enrichment_celltype=CL:0000860;3.03e-17;33!CL:0002057;3.03e-17;33!CL:0000576;2.86e-15;48!CL:0000473;1.23e-12;39!CL:0000234;1.23e-12;39!CL:0000766;1.57e-10;69!CL:0002322;1.37e-07;5!CL:0002393;5.39e-07;6!CL:0002397;5.39e-07;6 | |ontology_enrichment_celltype=CL:0002057!3.00e-32!42;CL:0000860!3.98e-29!45;CL:0002194!2.24e-27!63;CL:0000576!2.24e-27!63;CL:0000040!2.24e-27!63;CL:0000559!2.24e-27!63;CL:0002009!4.91e-26!65;CL:0000557!6.01e-25!71;CL:0000839!4.79e-24!70;CL:0000766!3.73e-23!76;CL:0000763!3.69e-15!112;CL:0000049!3.69e-15!112;CL:0002087!4.86e-12!119;CL:0000738!1.49e-09!140;CL:0002031!8.20e-09!124;CL:0000037!9.63e-08!172;CL:0000566!9.63e-08!172;CL:0002032!4.45e-07!165;CL:0000837!4.45e-07!165 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;3.03e-17;33!CL:0002057;3.03e-17;33!CL:0000576;2.86e-15;48!CL:0000473;1.23e-12;39!CL:0000234;1.23e-12;39!CL:0000766;1.57e-10;69!CL:0002322;1.37e-07;5!CL:0002393;5.39e-07;6!CL:0002397;5.39e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.98e-21,42;CL:0002057,5.98e-21,42;CL:0002194,3.73e-20,59;CL:0000576,3.73e-20,59;CL:0000040,3.73e-20,59;CL:0000559,3.73e-20,59;CL:0002009,2.35e-19,61;CL:0000557,2.93e-19,67;CL:0000473,7.37e-18,48;CL:0000234,7.37e-18,48;CL:0000839,1.44e-17,66;CL:0000766,9.54e-16,72;CL:0002087,1.48e-10,115;CL:0000763,3.10e-10,108;CL:0000049,3.10e-10,108;CL:0000738,3.29e-08,136;CL:0002031,9.04e-08,120;CL:0002322,2.16e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;2.46e-16;42!UBERON:0006241;1.07e-13;3!UBERON:0003057;1.07e-13;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002240;1.07e-13;3!UBERON:0005174;1.07e-13;3!UBERON:0001137;1.07e-13;3!UBERON:0002298;1.25e-10;6!UBERON:0005090;8.45e-10;2!UBERON:0001630;8.45e-10;2!UBERON:0002148;8.58e-09;2!UBERON:0006331;8.58e-09;2!UBERON:0009662;8.58e-09;2!UBERON:0004732;1.99e-07;13!UBERON:0000125;4.11e-07;9!UBERON:0002308;4.11e-07;9 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.68e-36!115;UBERON:0002390!2.48e-23!102;UBERON:0003061!2.48e-23!102;UBERON:0002193!2.45e-21!112;UBERON:0002371!2.66e-20!80;UBERON:0001049!6.37e-20!57;UBERON:0005068!6.37e-20!57;UBERON:0006241!6.37e-20!57;UBERON:0007135!6.37e-20!57;UBERON:0001474!1.39e-18!86;UBERON:0002616!1.29e-15!59;UBERON:0003080!1.21e-14!42;UBERON:0001017!1.35e-14!82;UBERON:0004765!3.30e-14!101;UBERON:0001434!3.30e-14!101;UBERON:0005743!5.66e-14!86;UBERON:0002780!6.76e-14!41;UBERON:0001890!6.76e-14!41;UBERON:0006240!6.76e-14!41;UBERON:0002405!1.93e-13!115;UBERON:0002346!3.90e-13!90;UBERON:0003075!6.67e-13!86;UBERON:0007284!6.67e-13!86;UBERON:0000073!2.61e-12!94;UBERON:0001016!2.61e-12!94;UBERON:0000955!3.90e-12!69;UBERON:0006238!3.90e-12!69;UBERON:0002020!5.34e-12!34;UBERON:0003528!5.34e-12!34;UBERON:0001893!2.09e-11!34;UBERON:0002791!5.24e-11!33;UBERON:0002308!4.40e-10!9;UBERON:0000125!4.40e-10!9;UBERON:0001869!6.02e-10!32;UBERON:0000922!1.17e-09!612;UBERON:0002298!4.35e-09!8;UBERON:0000062!1.73e-08!511;UBERON:0000468!2.76e-08!659;UBERON:0003056!4.77e-08!61;UBERON:0009663!6.08e-08!7;UBERON:0002420!1.03e-07!9;UBERON:0007245!1.03e-07!9;UBERON:0010009!1.03e-07!9;UBERON:0010011!1.03e-07!9;UBERON:0000454!1.03e-07!9;UBERON:0002050!4.31e-07!605;UBERON:0005423!4.31e-07!605;UBERON:0002204!5.06e-07!167;UBERON:0003081!5.44e-07!216;UBERON:0002619!8.00e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;1.07e-13;3!UBERON:0005174;1.07e-13;3!UBERON:0001137;1.07e-13;3!UBERON:0002298;1.25e-10;6!UBERON:0005090;8.45e-10;2!UBERON:0001630;8.45e-10;2!UBERON:0002148;8.58e-09;2!UBERON:0006331;8.58e-09;2!UBERON:0009662;8.58e-09;2!UBERON:0004732;1.99e-07;13!UBERON:0000125;4.11e-07;9!UBERON:0002308;4.11e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.39e-18,98;UBERON:0003061,5.39e-18,98;UBERON:0002371,1.92e-16,76;UBERON:0002193,8.21e-16,108;UBERON:0001474,6.60e-15,82;UBERON:0002240,1.15e-13,3;UBERON:0005174,1.15e-13,3;UBERON:0001137,1.15e-13,3;UBERON:0004765,3.53e-13,90;UBERON:0002405,1.31e-12,93;UBERON:0003076,1.60e-12,15;UBERON:0003057,1.60e-12,15;UBERON:0001434,2.07e-11,100;UBERON:0002298,9.65e-11,6;UBERON:0005090,8.85e-10,2;UBERON:0001630,8.85e-10,2;UBERON:0002148,8.61e-09,2;UBERON:0006331,8.61e-09,2;UBERON:0009662,8.61e-09,2;UBERON:0003081,3.14e-08,203;UBERON:0001049,1.56e-07,56;UBERON:0005068,1.56e-07,56;UBERON:0006241,1.56e-07,56;UBERON:0007135,1.56e-07,56;UBERON:0004732,1.65e-07,13;UBERON:0002204,1.74e-07,167;UBERON:0007023,2.82e-07,114;UBERON:0000125,4.87e-07,9;UBERON:0002308,4.87e-07,9;UBERON:0000922,9.75e-07,592 | |||
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| ||
|short_description=p@chr19:50993092..50993120,- | |short_description=p@chr19:50993092..50993120,- | ||
}} | }} |
Latest revision as of 16:24, 27 July 2015
Short description: | p@chr19:50993092..50993120, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:50993092..50993120, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.98e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.98e-21 | 42 |
monopoietic cell | 3.73e-20 | 59 |
monocyte | 3.73e-20 | 59 |
monoblast | 3.73e-20 | 59 |
promonocyte | 3.73e-20 | 59 |
macrophage dendritic cell progenitor | 2.35e-19 | 61 |
granulocyte monocyte progenitor cell | 2.93e-19 | 67 |
defensive cell | 7.37e-18 | 48 |
phagocyte | 7.37e-18 | 48 |
myeloid lineage restricted progenitor cell | 1.44e-17 | 66 |
myeloid leukocyte | 9.54e-16 | 72 |
nongranular leukocyte | 1.48e-10 | 115 |
myeloid cell | 3.10e-10 | 108 |
common myeloid progenitor | 3.10e-10 | 108 |
leukocyte | 3.29e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 9.04e-08 | 120 |
embryonic stem cell | 2.16e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.39e-18 | 98 |
blood island | 5.39e-18 | 98 |
bone marrow | 1.92e-16 | 76 |
hemolymphoid system | 8.21e-16 | 108 |
bone element | 6.60e-15 | 82 |
spinal cord | 1.15e-13 | 3 |
dorsal region element | 1.15e-13 | 3 |
dorsum | 1.15e-13 | 3 |
skeletal element | 3.53e-13 | 90 |
immune system | 1.31e-12 | 93 |
posterior neural tube | 1.60e-12 | 15 |
chordal neural plate | 1.60e-12 | 15 |
skeletal system | 2.07e-11 | 100 |
brainstem | 9.65e-11 | 6 |
muscle structure | 8.85e-10 | 2 |
muscle organ | 8.85e-10 | 2 |
locus ceruleus | 8.61e-09 | 2 |
brainstem nucleus | 8.61e-09 | 2 |
hindbrain nucleus | 8.61e-09 | 2 |
lateral plate mesoderm | 3.14e-08 | 203 |
neural tube | 1.56e-07 | 56 |
neural rod | 1.56e-07 | 56 |
future spinal cord | 1.56e-07 | 56 |
neural keel | 1.56e-07 | 56 |
segmental subdivision of nervous system | 1.65e-07 | 13 |
musculoskeletal system | 1.74e-07 | 167 |
adult organism | 2.82e-07 | 114 |
neural nucleus | 4.87e-07 | 9 |
nucleus of brain | 4.87e-07 | 9 |
embryo | 9.75e-07 | 592 |