FFCP PHASE1:Hg19::chr1:182992728..182992739,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:182992728..182992739,+
|short_description=p8@LAMC1
|description=CAGE_peak_8_at_LAMC1_5end
|association_with_transcript=131bp_to_ENST00000258341_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3915 | |EntrezGene=3915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |HGNC=6492 | ||
|TSSclassifier=strong | |||
|UniProt=P11047 | |UniProt=P11047 | ||
|association_with_transcript=131bp_to_ENST00000258341_5end | |||
|cluster_id=chr1:182992728..182992739,+ | |||
|coexpression_cluster_id=C1253 | |||
|description=CAGE_peak_8_at_LAMC1_5end | |||
|id=chr1:182992728..182992739,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.70e-19!180;CL:0000222!1.26e-16!119;CL:0000680!3.23e-15!57;CL:0000056!3.23e-15!57;CL:0000355!3.23e-15!57;CL:0000187!1.09e-14!54;CL:0000393!1.51e-14!60;CL:0000211!1.51e-14!60;CL:0000183!9.82e-14!59;CL:0002321!1.08e-12!248;CL:0000220!1.09e-12!246;CL:0000359!9.38e-11!32;CL:0000192!1.15e-10!42;CL:0000514!1.15e-10!42;CL:0000057!1.46e-08!75;CL:0002494!1.78e-07!16;CL:0002334!2.91e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.60e-10;32!CL:0002494;2.74e-10;16!CL:0002334;1.40e-09;12!CL:0000192;1.58e-09;43!CL:0000393;4.55e-09;61!CL:0000211;4.55e-09;61!CL:0000187;2.90e-08;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,5.84e-17,55;CL:0000680,1.65e-16,58;CL:0000056,1.65e-16,58;CL:0000355,1.65e-16,58;CL:0000393,3.96e-16,61;CL:0000211,3.96e-16,61;CL:0000222,1.72e-14,121;CL:0000192,9.26e-13,43;CL:0000514,9.26e-13,43;CL:0000359,8.71e-11,32;CL:0002494,1.60e-10,16;CL:0002334,1.02e-09,12;CL:0000048,1.12e-08,427;CL:0000057,2.72e-08,76;CL:0002321,4.35e-08,250;CL:0000723,4.90e-08,433;CL:0000034,1.86e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000514;1.58e-09;43!CL:0000355;5.11e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.94e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.42e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004872!4.98e-19!84;UBERON:0001134!9.34e-17!61;UBERON:0002036!9.34e-17!61;UBERON:0003082!9.34e-17!61;UBERON:0002049!1.10e-16!79;UBERON:0007798!1.10e-16!79;UBERON:0002385!1.28e-16!63;UBERON:0001015!1.28e-16!63;UBERON:0000383!1.28e-16!63;UBERON:0000486!3.50e-16!82;UBERON:0004290!4.22e-16!70;UBERON:0000490!9.13e-16!138;UBERON:0000914!2.92e-15!83;UBERON:0002329!2.92e-15!83;UBERON:0003077!2.92e-15!83;UBERON:0003059!2.92e-15!83;UBERON:0007282!2.92e-15!83;UBERON:0009618!2.92e-15!83;UBERON:0007285!2.92e-15!83;UBERON:0002100!8.64e-15!216;UBERON:0003914!8.79e-15!118;UBERON:0001009!1.20e-14!113;UBERON:0004535!3.44e-14!110;UBERON:0000055!3.95e-14!69;UBERON:0001981!9.48e-14!60;UBERON:0007500!9.48e-14!60;UBERON:0004537!9.48e-14!60;UBERON:0006965!9.48e-14!60;UBERON:0001637!7.50e-13!42;UBERON:0003509!7.50e-13!42;UBERON:0004572!7.50e-13!42;UBERON:0005256!8.50e-13!143;UBERON:0004573!2.08e-11!33;UBERON:0004571!2.08e-11!33;UBERON:0003104!4.60e-11!238;UBERON:0009142!4.60e-11!238;UBERON:0007100!1.72e-10!27;UBERON:0000948!3.02e-10!24;UBERON:0005498!3.02e-10!24;UBERON:0004140!3.02e-10!24;UBERON:0009881!3.02e-10!24;UBERON:0004141!3.02e-10!24;UBERON:0003084!3.02e-10!24;UBERON:0007005!3.02e-10!24;UBERON:0004139!3.02e-10!24;UBERON:0004291!3.02e-10!24;UBERON:0000468!9.84e-10!659;UBERON:0000481!1.84e-08!347;UBERON:0000475!2.10e-08!365;UBERON:0000926!2.27e-08!448;UBERON:0004120!2.27e-08!448;UBERON:0006603!2.27e-08!448;UBERON:0000467!3.33e-08!625;UBERON:0003103!3.82e-08!69;UBERON:0000480!5.12e-08!626;UBERON:0000119!6.32e-08!312;UBERON:0000483!6.42e-08!309;UBERON:0004458!2.69e-07!49;UBERON:0000947!5.59e-07!21;UBERON:0010191!5.59e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;4.29e-12;22!UBERON:0007100;7.88e-11;25!UBERON:0004573;1.11e-10;33!UBERON:0004571;1.11e-10;33!UBERON:0001637;3.76e-09;42!UBERON:0003509;3.76e-09;42!UBERON:0004572;3.76e-09;42!UBERON:0004457;2.54e-08;9!UBERON:0000042;2.54e-08;9!UBERON:0001013;2.65e-08;14!UBERON:0002385;2.86e-07;31!UBERON:0001015;2.86e-07;31!UBERON:0000383;2.86e-07;31!UBERON:0003688;8.81e-07;6!UBERON:0002358;8.81e-07;6!UBERON:0003684;8.81e-07;6!UBERON:0001178;8.81e-07;6 | |||
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|phase1_expression=7.44881355009282,5.35251309727458,6.3429481843187,3.00219895059391,3.12872766099101,1.74467704820074,2.53299878168311,3.79031924056099,1.56711376919903,0,0,2.18441372130172,0.527533956456907,0.37129905888014,0.662794751455832,0.672325146451775,1.80808358407193,1.46062018077475,0.975865597581014,0.123121058076788,0,0.313454721478088,1.14494394852423,0.273748850145768,0.502170558379211,0.0764134057479513,0,0,0.393364276848904,0,0,0,0,0,0.92960640696362,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.5045493051169,2.68280343881454,3.83587685530591,1.80719576192283,0,0.434539556882471,0,0.486634870302636,0.945348171640679,1.77383517970051,1.40535657109002,0.327447688744282,0,0,0,0.174129737299267,0,0,0,0,1.19257444420023,0.860234595106124,0.694281003215189,1.13061588384802,0.838998872419812,0.825354125820202,0.626984899610432,2.32575083252396,6.04802646567407,3.3472061276467,0.805658634218294,2.28081631715554,2.92874469057803,0.735326160691737,2.43042584364528,0.714397826272638,0.22452937262617,1.35133776579987,0,1.89853131913626,1.46561395144326,0,0,0,2.48485975847659,2.78587125662075,8.60659675285922,7.45775213946916,2.12801029319014,0,1.06748995729705,1.72667283892012,9.02512002659322,1.61652806483626,3.59616186849609,1.96764655938411,4.60940739583999,0.468642863667593,2.80944069147288,1.1409436430889,1.49448680551801,0.117434498643765,0.161872944368132,0.280901613404497,1.63323337003915,0.859840221182376,0.619954687054593,1.18800285728205,1.7308685049499,0,0.718618141816238,0.336672227908132,1.12606667884768,0,0.877955241761676,1.83892677479412,1.95309476578576,1.24775401476023,1.25572744982203,1.70845911054854,1.48352330811693,1.20036438433761,0.515262646192195,0.772921620136887,1.11670113798954,3.88185564154912,0.974370051611986,2.01947019395292,1.38074847963449,0.646584227275248,0.355009592516614,0.403008392910561,1.3564847384839,0.57978255948989,0.272746120590835,0.573609190778008,0.487894824518382,0.397589304964456,0.929551542956147,0.518305275076852,1.00928340350251,0.36497735907583,0,0.643240938192885,1.38134921352481,2.78620756819187,2.88751792667834,0,0.337169380156203,0.241011029883482,0.55146986366197,0,0.949082476444386,0.404493924480493,0.196221465125346,0.38474715694639,1.4763109092493,0,0.8231480226628,0,0,0,0,0,1.47586126251736,2.05881372358231,0.219500570817251,0,0.100528972411631,0.462942225792648,0.325808305310325,0,1.44331342025273,1.27523445472584,4.69634776943287,1.29929802984966,0.462985512576611,0.951270761172991,0,0,0.246217006087397,0,0,0,0.335964256397719,0.283550194484773,0.268675568108545,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.205654985406647,0.300343057843917,0.285826432630578,0.672786506072164,0,1.3200891447771,3.49033632546,7.15312891703765,1.690605505112,3.19125739901845,1.04007436911366,0.257207374262142,0,0.799266537048298,1.85871391755592,2.71310802695722,0,1.62868092146868,2.13235169245527,0,1.50719688529793,1.74306691720059,1.49959486773086,0,0,0,3.35474797688216,0,1.42636905040718,3.32997005335432,0.61642896765115,0.895304816199478,0,0,0,0,1.77866236955724,0,1.54657762555539,1.00509759200609,0.637938751653163,0,0,0,1.34960640891054,1.50051156317903,0.542530047399471,2.49565033836969,3.56857977594324,2.36553622550902,3.27995961979597,1.50473049863859,2.27407504055985,1.03473071292505,1.32845119707087,1.65932251687533,1.47702144595741,0.391602314925481,0.343143423810856,0,0,0,0.606255142892519,1.66435439510497,0.30239029332968,3.72161711728165,1.84154367945675,2.24528075546459,5.12556597022804,3.07024349440022,3.37793234401576,1.48418066444991,2.31314540703983,5.68197521002007,1.47828880824856,4.15403543346897,2.5566283261191,2.1754700926492,0.40101294060657,0.184161977871793,1.95184561879831,1.27463817604702,1.57349297951309,0,0.385076685522074,0.784349769176855,0,0.211103257785751,1.13733384070897,1.02056223165909,1.29549549661284,3.08454505380579,0.812839312631559,0,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0,0.721287081534056,0,0,1.14853107599234,0.650060246036521,1.6068392984416,1.54673149267395,2.7728751080636,1.68854042198743,1.10269257987624,1.93356440762893,0.870100163485371,0.852266274161009,3.65031346151623,0,0.192190067365106,0.638063562472921,0.4046311234222,0.464845549297286,9.4443704049192,2.0911118104818,4.62050370264133,4.7907542728532,3.47973196830029,4.633105477598,2.14687330112987,0.744316738719335,1.58189712359363,2.2875623270859,0,2.99557291623744,3.18203247925937,1.56989728039846,1.97859703341646,1.92175920815238,1.88499843753098,4.65019707618627,1.58510321173008,2.52755073743389,0,7.31140468893853,4.22600587027022,1.77449884830381,1.27264888758341,7.910568163417,4.41092274836899,0,2.63070531152258,1.15755106853338,2.62357900818653,0.608731130888112,1.8589409885985,1.69017361519345,0.573645408816206,0.589494246078727,1.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| ||
|short_description=p8@LAMC1 | |||
}} | }} |
Latest revision as of 01:51, 19 September 2015
Short description: | p8@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | 131bp_to_ENST00000258341_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 5.84e-17 | 55 |
muscle precursor cell | 1.65e-16 | 58 |
myoblast | 1.65e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.65e-16 | 58 |
electrically responsive cell | 3.96e-16 | 61 |
electrically active cell | 3.96e-16 | 61 |
mesodermal cell | 1.72e-14 | 121 |
smooth muscle cell | 9.26e-13 | 43 |
smooth muscle myoblast | 9.26e-13 | 43 |
vascular associated smooth muscle cell | 8.71e-11 | 32 |
cardiocyte | 1.60e-10 | 16 |
preadipocyte | 1.02e-09 | 12 |
multi fate stem cell | 1.12e-08 | 427 |
fibroblast | 2.72e-08 | 76 |
embryonic cell | 4.35e-08 | 250 |
somatic stem cell | 4.90e-08 | 433 |
stem cell | 1.86e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.42e-07 | 14 |