FFCP PHASE1:Hg19::chr1:201123388..201123410,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:201123388..201123410,-
|short_description=p2@TMEM9
|description=CAGE_peak_2_at_TMEM9_5end
|association_with_transcript=150bp_to_ENST00000367329,ENST0000048...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=252839 | |EntrezGene=252839 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18823 | |HGNC=18823 | ||
|TSSclassifier=strong | |||
|UniProt=Q9P0T7 | |UniProt=Q9P0T7 | ||
|association_with_transcript=150bp_to_ENST00000367329,ENST00000485839,uc001gvw.2_5end | |||
|cluster_id=chr1:201123388..201123410,- | |||
|description=CAGE_peak_2_at_TMEM9_5end | |||
|id=chr1:201123388..201123410,- | |||
|ontology_enrichment_celltype=CL:0000055!8.29e-12!180;CL:0000220!1.80e-10!246;CL:0002321!3.64e-10!248;CL:0000183!7.77e-09!59;CL:0000222!2.48e-08!119;CL:0000192!2.59e-08!42;CL:0000514!2.59e-08!42;CL:0000680!3.54e-08!57;CL:0000056!3.54e-08!57;CL:0000355!3.54e-08!57;CL:0000359!5.42e-08!32;CL:0000066!7.59e-08!254;CL:0000187!8.07e-08!54 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.77e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.85e-08,32;CL:0000222,1.48e-07,121;CL:0002321,3.11e-07,250;CL:0000680,3.12e-07,58;CL:0000056,3.12e-07,58;CL:0000355,3.12e-07,58;CL:0000192,3.32e-07,43;CL:0000514,3.32e-07,43;CL:0000187,8.08e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.06e-21!365;UBERON:0000483!6.44e-15!309;UBERON:0000119!7.96e-15!312;UBERON:0000481!2.73e-13!347;UBERON:0002100!1.89e-10!216;UBERON:0000477!1.96e-10!286;UBERON:0000025!3.70e-10!194;UBERON:0000064!3.70e-09!219;UBERON:0004111!5.20e-09!241;UBERON:0000480!8.23e-09!626;UBERON:0000467!1.08e-08!625;UBERON:0003104!3.16e-08!238;UBERON:0009142!3.16e-08!238;UBERON:0000468!4.69e-08!659;UBERON:0000955!1.01e-07!69;UBERON:0006238!1.01e-07!69;UBERON:0000914!1.34e-07!83;UBERON:0002329!1.34e-07!83;UBERON:0003077!1.34e-07!83;UBERON:0003059!1.34e-07!83;UBERON:0007282!1.34e-07!83;UBERON:0009618!1.34e-07!83;UBERON:0007285!1.34e-07!83;UBERON:0005256!1.38e-07!143;UBERON:0000486!2.44e-07!82;UBERON:0000923!4.44e-07!604;UBERON:0005291!4.44e-07!604;UBERON:0006598!4.44e-07!604;UBERON:0002532!4.44e-07!604;UBERON:0002050!5.41e-07!605;UBERON:0005423!5.41e-07!605;UBERON:0004290!7.99e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;7.54e-07;34!UBERON:0002020;7.54e-07;34!UBERON:0001869;7.60e-07;32!UBERON:0001893;8.49e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,9.76e-12,306;UBERON:0000119,1.91e-11,309;UBERON:0000025,2.86e-10,192;UBERON:0000955,1.69e-09,68;UBERON:0006238,1.69e-09,68;UBERON:0004111,1.07e-08,240;UBERON:0002100,7.37e-08,199;UBERON:0001893,8.86e-08,34;UBERON:0003528,1.04e-07,34;UBERON:0002020,1.04e-07,34;UBERON:0001869,1.45e-07,32;UBERON:0000073,2.62e-07,53;UBERON:0002616,2.62e-07,53;UBERON:0002791,3.76e-07,32;UBERON:0001017,3.90e-07,81;UBERON:0007503,4.04e-07,78;UBERON:0001049,4.81e-07,56;UBERON:0005068,4.81e-07,56;UBERON:0006241,4.81e-07,56;UBERON:0007135,4.81e-07,56;UBERON:0010314,7.07e-07,132;UBERON:0002619,7.76e-07,22;UBERON:0007524,8.87e-07,73 | |||
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| ||
|short_description=p2@TMEM9 | |||
}} | }} |
Latest revision as of 16:55, 19 September 2015
Short description: | p2@TMEM9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TMEM9_5end |
Coexpression cluster: | NA |
Association with transcript: | 150bp_to_ENST00000367329, ENST00000485839, uc001gvw.2_5end |
EntrezGene: | TMEM9 |
HGNC: | 18823 |
UniProt: | Q9P0T7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.85e-08 | 32 |
mesodermal cell | 1.48e-07 | 121 |
embryonic cell | 3.11e-07 | 250 |
muscle precursor cell | 3.12e-07 | 58 |
myoblast | 3.12e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.12e-07 | 58 |
smooth muscle cell | 3.32e-07 | 43 |
smooth muscle myoblast | 3.32e-07 | 43 |
muscle cell | 8.08e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
epithelium | 9.76e-12 | 306 |
cell layer | 1.91e-11 | 309 |
tube | 2.86e-10 | 192 |
brain | 1.69e-09 | 68 |
future brain | 1.69e-09 | 68 |
anatomical conduit | 1.07e-08 | 240 |
trunk | 7.37e-08 | 199 |
telencephalon | 8.86e-08 | 34 |
brain grey matter | 1.04e-07 | 34 |
gray matter | 1.04e-07 | 34 |
cerebral hemisphere | 1.45e-07 | 32 |
regional part of nervous system | 2.62e-07 | 53 |
regional part of brain | 2.62e-07 | 53 |
regional part of telencephalon | 3.76e-07 | 32 |
central nervous system | 3.90e-07 | 81 |
epithelial vesicle | 4.04e-07 | 78 |
neural tube | 4.81e-07 | 56 |
neural rod | 4.81e-07 | 56 |
future spinal cord | 4.81e-07 | 56 |
neural keel | 4.81e-07 | 56 |
structure with developmental contribution from neural crest | 7.07e-07 | 132 |
regional part of cerebral cortex | 7.76e-07 | 22 |
dense mesenchyme tissue | 8.87e-07 | 73 |