FFCP PHASE1:Hg19::chr12:122018897..122018941,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84678 | |EntrezGene=84678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13610 | |HGNC=13610 | ||
|TSSclassifier=strong | |||
|UniProt=E7ET57,E7EML5,Q8NHM5 | |UniProt=E7ET57,E7EML5,Q8NHM5 | ||
|association_with_transcript=0bp_to_ENST00000261824,ENST00000397480,ENST00000538046,NM_032590,uc001uat.2,uc001uau.2,uc001uav.3_5end | |association_with_transcript=0bp_to_ENST00000261824,ENST00000397480,ENST00000538046,NM_032590,uc001uat.2,uc001uau.2,uc001uav.3_5end | ||
|cluster_id=chr12:122018897..122018941,- | |||
|description=CAGE_peak_6_at_KDM2B_5end | |description=CAGE_peak_6_at_KDM2B_5end | ||
|id=chr12:122018897..122018941,- | |id=chr12:122018897..122018941,- | ||
|ontology_enrichment_celltype=CL:0000055!1.57e-09!180;CL:0000222!1.37e-07!119 | |ontology_enrichment_celltype=CL:0000055!1.57e-09!180;CL:0000222!1.37e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.25e-08;10 | |ontology_enrichment_celltype_v019=CL:0000148;1.25e-08;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.29e-08,10;CL:0000541,1.29e-08,10;CL:0000115,2.48e-07,36 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000025!3.05e-18!194;UBERON:0004111!6.93e-16!241;UBERON:0000119!4.57e-13!312;UBERON:0000483!1.92e-12!309;UBERON:0000477!1.39e-11!286;UBERON:0003914!2.28e-11!118;UBERON:0002049!7.66e-11!79;UBERON:0007798!7.66e-11!79;UBERON:0004872!3.65e-10!84;UBERON:0001049!4.78e-10!57;UBERON:0005068!4.78e-10!57;UBERON:0006241!4.78e-10!57;UBERON:0007135!4.78e-10!57;UBERON:0000055!2.08e-09!69;UBERON:0001009!5.45e-09!113;UBERON:0004535!6.68e-09!110;UBERON:0001981!7.55e-09!60;UBERON:0007500!7.55e-09!60;UBERON:0004537!7.55e-09!60;UBERON:0006965!7.55e-09!60;UBERON:0002616!1.06e-08!59;UBERON:0003075!5.56e-08!86;UBERON:0007284!5.56e-08!86;UBERON:0000468!7.16e-08!659;UBERON:0000475!3.54e-07!365;UBERON:0000467!4.40e-07!625;UBERON:0000480!6.68e-07!626;UBERON:0003076!7.09e-07!15;UBERON:0003057!7.09e-07!15;UBERON:0002346!9.84e-07!90 | |ontology_enrichment_uberon=UBERON:0000025!3.05e-18!194;UBERON:0004111!6.93e-16!241;UBERON:0000119!4.57e-13!312;UBERON:0000483!1.92e-12!309;UBERON:0000477!1.39e-11!286;UBERON:0003914!2.28e-11!118;UBERON:0002049!7.66e-11!79;UBERON:0007798!7.66e-11!79;UBERON:0004872!3.65e-10!84;UBERON:0001049!4.78e-10!57;UBERON:0005068!4.78e-10!57;UBERON:0006241!4.78e-10!57;UBERON:0007135!4.78e-10!57;UBERON:0000055!2.08e-09!69;UBERON:0001009!5.45e-09!113;UBERON:0004535!6.68e-09!110;UBERON:0001981!7.55e-09!60;UBERON:0007500!7.55e-09!60;UBERON:0004537!7.55e-09!60;UBERON:0006965!7.55e-09!60;UBERON:0002616!1.06e-08!59;UBERON:0003075!5.56e-08!86;UBERON:0007284!5.56e-08!86;UBERON:0000468!7.16e-08!659;UBERON:0000475!3.54e-07!365;UBERON:0000467!4.40e-07!625;UBERON:0000480!6.68e-07!626;UBERON:0003076!7.09e-07!15;UBERON:0003057!7.09e-07!15;UBERON:0002346!9.84e-07!90 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000025,2.19e-18,192;UBERON:0004111,2.58e-14,240;UBERON:0001049,8.51e-12,56;UBERON:0005068,8.51e-12,56;UBERON:0006241,8.51e-12,56;UBERON:0007135,8.51e-12,56;UBERON:0000073,6.29e-10,53;UBERON:0002616,6.29e-10,53;UBERON:0003914,1.57e-09,117;UBERON:0000119,4.61e-09,309;UBERON:0000483,1.21e-08,306;UBERON:0003075,1.61e-08,82;UBERON:0007284,1.61e-08,82;UBERON:0000055,1.81e-08,68;UBERON:0003076,1.92e-08,15;UBERON:0003057,1.92e-08,15;UBERON:0002049,2.19e-08,78;UBERON:0007798,2.19e-08,78;UBERON:0004872,5.30e-08,83;UBERON:0007500,9.58e-08,59;UBERON:0001981,9.58e-08,59;UBERON:0004537,9.58e-08,59;UBERON:0006965,9.58e-08,59;UBERON:0001016,1.33e-07,89;UBERON:0002346,1.61e-07,86;UBERON:0001017,1.69e-07,81;UBERON:0000955,8.82e-07,68;UBERON:0006238,8.82e-07,68 | |||
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|phase1_expression=1.2717486548939,0.214100523890983,1.55049844505568,0,0.893922188854576,0,0,0,1.04474251279935,1.72013755551056,0,1.31064823278103,0.263766978228454,0.37129905888014,0,0,0.602694528023977,0.730310090387373,0.487932798790507,0.61560529038394,1.42800483870977,1.25381888591235,0.85870796139317,0.684372125364421,1.00434111675842,1.83392173795083,1.31360943119913,0.865818594450472,1.57345710739562,0.767658796194425,0,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0,2.01523926815932,2.59114932815184,2.57575567634187,0,0.377875943688809,0.242584061187816,0,0.411167888021826,0,0.28769239232215,0,0.236482229888585,0.344745680736619,0,0,0.376484679085209,0,0,0.306083892370903,0.320929027076094,0,0,0.199463657621632,0,0,0.56738522469114,0,0.502497330513487,0.521482918420201,0.217188844705117,0,0,0,0.211255286311942,0,0,0.673971786878971,0.600707571366025,0.964353520182481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0,0,0,0,2.01210257911091,0.767175371061182,0.361439152384566,0,0.579386075843295,1.5905718941022,0.973269740605272,1.32348744029695,0.665188192387692,1.14185221401064,1.0478326039817,0,0,0.649094787309367,1.0447784237956,1.06366368415092,0.238490624305342,0,0,0.993812036833525,0,1.04142150482278,1.69592382577203,1.67799774483962,0.550236083880135,1.46296476575767,1.29208379584664,1.42306505074684,0.66944122552934,1.61131726843659,2.28081631715554,0.488124115096339,2.57364156242108,0,1.51809538082936,2.02076435363553,1.57656072676651,1.53316637465883,1.89853131913626,1.46561395144326,0,0,0,0.993943903390637,1.39293562831038,2.64818361626438,1.43418310374407,1.41867352879343,2.24271040056923,2.1349799145941,0.98667019366864,0.933633106199299,1.61652806483626,2.28846664358842,1.51357427644931,0.576175924479999,0.234321431833797,0.624320153660641,0.570471821544449,0.298897361103602,0.822041490506354,0.323745888736263,0.561803226808994,0.816616685019573,1.35117749042945,0.206651562351531,1.18800285728205,0.494533858557114,2.73048408581408,0.718618141816238,0.336672227908132,0.500474079487857,0.831192346452549,1.75591048352335,0.30648779579902,0.300476117813194,0.567160915800105,0.89694817844431,0.213557388818567,0.847727604638247,0.600182192168805,0.92747276314595,1.03056216018252,0.18611685633159,0.675105328965065,0.292311015483596,3.28163906517349,0.736399189138395,0,0.355009592516614,1.30977727695932,0.67824236924195,0,0.545492241181669,0.286804595389004,0.365921118388786,1.32529768321485,1.04574548582567,1.7622379352613,1.51392510525377,0.72995471815166,0,0.643240938192885,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.8231480226628,1.47008711385542,0,0,1.77236972004421,0,0.860919069801795,2.40194934417936,0.109750285408626,0,0,0.185176890317059,0.325808305310325,0,0,0.463721619900307,0.234817388471643,2.7429625074604,0,1.90254152234598,0,0.858486162094873,5.17055712783534,0.702012795417713,1.78357394746474,0,0.16798212819886,0.141775097242386,0,0,0,0.985326475791887,2.11316241631742,2.28060927094849,1.44119953416961,1.00993946741104,3.80987365753014,6.875791660049,3.51652341630141,6.84289784090821,2.05654985406647,4.20480280981484,2.85826432630578,2.13049060256185,1.74384027533312,0.80672114403045,0.904902010304444,0,0.845302752556,0.797814349754612,0,1.28603687131071,0,1.8649552531127,0.285955987316295,0,1.64648067356154,0.65147236858747,0.710783897485092,0.791951872933429,2.1100756394171,0,0.699810938274399,3.64871341923571,2.51128545716063,0,0.479249710983165,0,0,0.434343920002738,1.43833425785268,1.96967059563885,0,0,0,0.128343036279748,1.01637849688985,0,0,0.837581326671744,0,0,0,0,0.24538298343828,0,0.271265023699736,0.415941723061614,0.713715955188647,0.315404830067869,1.17141414992713,0.902838299183157,2.27407504055985,0,1.32845119707087,1.29058417979192,0.347534457872331,1.17480694477644,0.686286847621712,0,0.215714200818617,0.106727557803444,0,0,1.20956117331872,2.23297027036899,2.14846762603287,0.841980283299221,1.28139149255701,0,1.28683136914886,1.48418066444991,1.3878872442239,0.355123450626254,0.574890092096664,2.07701771673448,0.929683027679674,0.483437798366489,0.200506470303285,0.368323955743585,0.574072240823034,0.728364672026868,0.131124414959424,0.451199612907412,0.539107359730903,1.56869953835371,4.38417673959782,0.949964660035881,2.27466768141793,0.680374821106063,1.0795795805107,3.08454505380579,1.62567862526312,0,1.01950509218015,0.831076008928724,0.671624264166535,0,0,0.769350375349168,0.984043937099117,0,0.721287081534056,1.19040304263846,1.32015199872941,0,0,6.42735719376638,0,1.54048617114644,0.921022048356777,2.20538515975249,0.966782203814463,0.870100163485371,1.36362603865761,0.712256285173899,0.165284915360978,0.384380134730212,0.127612712494584,0,2.32422774648643,3.46293581513704,1.3940745403212,2.7723022215848,1.59691809095107,0.869932992075073,2.7798632865588,0.715624433709956,0.744316738719335,0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| ||
|short_description=p6@KDM2B | |short_description=p6@KDM2B | ||
}} | }} |
Latest revision as of 22:17, 16 September 2015
Short description: | p6@KDM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_KDM2B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000261824, ENST00000397480, ENST00000538046, NM_032590, uc001uat.2, uc001uau.2, uc001uav.3_5end |
EntrezGene: | KDM2B |
HGNC: | 13610 |
UniProt: | E7ET57E7EML5Q8NHM5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.29e-08 | 10 |
melanoblast | 1.29e-08 | 10 |
endothelial cell | 2.48e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
tube | 2.19e-18 | 192 |
anatomical conduit | 2.58e-14 | 240 |
neural tube | 8.51e-12 | 56 |
neural rod | 8.51e-12 | 56 |
future spinal cord | 8.51e-12 | 56 |
neural keel | 8.51e-12 | 56 |
regional part of nervous system | 6.29e-10 | 53 |
regional part of brain | 6.29e-10 | 53 |
epithelial tube | 1.57e-09 | 117 |
cell layer | 4.61e-09 | 309 |
epithelium | 1.21e-08 | 306 |
neural plate | 1.61e-08 | 82 |
presumptive neural plate | 1.61e-08 | 82 |
vessel | 1.81e-08 | 68 |
posterior neural tube | 1.92e-08 | 15 |
chordal neural plate | 1.92e-08 | 15 |
vasculature | 2.19e-08 | 78 |
vascular system | 2.19e-08 | 78 |
splanchnic layer of lateral plate mesoderm | 5.30e-08 | 83 |
epithelial tube open at both ends | 9.58e-08 | 59 |
blood vessel | 9.58e-08 | 59 |
blood vasculature | 9.58e-08 | 59 |
vascular cord | 9.58e-08 | 59 |
nervous system | 1.33e-07 | 89 |
neurectoderm | 1.61e-07 | 86 |
central nervous system | 1.69e-07 | 81 |
brain | 8.82e-07 | 68 |
future brain | 8.82e-07 | 68 |