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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005902
|accession_numbers=CAGE;DRX008527;DRR009399;DRZ000824;DRZ002209;DRZ012174;DRZ013559
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.68!532.12!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.26!181.81!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.13!134.36!HES2;;chr17:7493405..7493419,-!p1@SOX15!2.09!123.27!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.90!118.40!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.84!76.71!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.78!58.98!TP63;;chr4:57547454..57547469,-!p1@HOPX!1.74!53.66!HOPX;;chr17:80797886..80797906,-!p1@ZNF750!1.73!52.77!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.71!102.43!SOX15;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!54.99!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!62.08!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.59!37.69!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!1.58!42.57!BNC1;;chr8:10588010..10588030,-!p1@SOX7!1.55!34.59!SOX7;;chr6:34524093..34524135,-!p1@SPDEF!1.53!32.81!SPDEF;;chr19:45908292..45908374,-!p1@PPP1R13L!1.49!252.31!PPP1R13L;;chr11:34642612..34642646,+!p1@EHF!1.49!30.15!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.49!29.71!ZBED2;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!45.23!FOXQ1;;chr6:34524025..34524045,-!p3@SPDEF!1.46!27.94!SPDEF;;chr15:67458861..67458879,+!p17@SMAD3!1.43!26.16!SMAD3;;chr6:34524049..34524089,-!p2@SPDEF!1.42!25.28!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!1.40!28.82!GATA3;;chr2:176969179..176969226,+!p2@HOXD11!1.36!22.17!HOXD11;;chr11:65554528..65554546,+!p1@OVOL1!1.33!20.40!OVOL1;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.51!HOXA9;;chr1:209979449..209979460,-!p3@IRF6!1.29!18.62!IRF6;;chr13:73633131..73633149,+!p1@KLF5!1.26!178.70!KLF5;;chr2:46524897..46524911,+!p2@EPAS1!1.26!47.45!EPAS1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.85!ELF3;;chr22:19748231..19748317,+!p1@TBX1!1.24!16.41!TBX1;;chr7:96654133..96654150,-!p1@DLX5!1.22!15.52!DLX5;;chr6:10413188..10413249,-!p7@TFAP2A!1.17!13.75!TFAP2A;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.30!FOXA1;;chr1:24645832..24645853,+!p1@GRHL3!1.14!12.86!GRHL3;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.38!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.97!GRHL2;;chr16:86612320..86612394,+!p1@FOXL1!1.11!11.97!FOXL1;;chr8:49833978..49833996,-!p1@SNAI2!1.10!235.02!SNAI2;;chr17:45928443..45928473,-!p2@SP6!1.10!11.53!SP6;;chr7:27205136..27205164,-!p1@HOXA9!1.08!11.09!HOXA9;;chr12:53625966..53626012,-!p2@RARG!1.07!28.82!RARG;;chr6:10412576..10412599,-!p5@TFAP2A!1.07!10.64!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.07!10.64!ELF3;;chr1:209979375..209979386,-!p4@IRF6!1.07!10.64!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.94!HMGA2;;chr6:10415484..10415508,-!p3@TFAP2A!1.05!10.20!TFAP2A;;chr1:37940170..37940190,+!p1@ZC3H12A!1.03!121.06!ZC3H12A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.03!9.76!TFCP2L1;;chr2:46524878..46524891,+!p3@EPAS1!1.02!16.85!EPAS1;;chr17:80797863..80797874,-!p2@ZNF750!1.01!9.31!ZNF750;;chr11:129245526..129245553,+!p1@BARX2!1.01!9.31!BARX2;;chr10:8096772..8096787,+!p2@GATA3!1.00!10.64!GATA3;;chr1:2461692..2461710,-!p1@HES5!0.97!8.43!HES5;;chr16:79634624..79634642,-!p1@MAF!0.95!31.93!MAF;;chr2:176994408..176994492,+!p1@HOXD8!0.95!7.98!HOXD8;;chr17:38465441..38465481,+!p6@RARA!0.93!9.31!RARA;;chr17:46806067..46806097,-!p1@HOXB13!0.93!7.54!HOXB13;;chr2:10091815..10091864,+!p1@GRHL1!0.92!9.76!GRHL1;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.97!TBX3;;chr19:45908278..45908282,-!p5@PPP1R13L!0.91!7.09!PPP1R13L;;chr1:24645921..24645973,+!p2@GRHL3!0.91!7.09!GRHL3;;chr14:21566731..21566836,-!p1@ZNF219!0.90!77.60!ZNF219;;chr3:5021026..5021035,+!p5@BHLHE40!0.89!8.43!BHLHE40;;chr10:8095593..8095625,+!p3@GATA3!0.89!7.98!GATA3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.88!490.43!TAX1BP3;;chr19:42636586..42636607,-!p1@POU2F2!0.88!19.07!POU2F2;;chr6:1312155..1312187,+!p2@FOXQ1!0.88!6.65!FOXQ1;;chr7:96654026..96654061,-!p2@DLX5!0.88!6.65!DLX5;;chr17:38465413..38465438,+!p5@RARA!0.87!10.64!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.86!10.64!MSX2;;chr6:106546808..106546833,+!p3@PRDM1!0.86!7.98!PRDM1;;chr1:10856665..10856683,-!p4@CASZ1!0.86!6.21!CASZ1;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.20!NR2F6;;chr8:128748308..128748324,+!p2@MYC!0.83!172.49!MYC;;chr17:26833339..26833378,+!p1@FOXN1!0.83!5.76!FOXN1;;chr1:24646263..24646277,+!p4@GRHL3!0.83!5.76!GRHL3;;chr1:40367668..40367684,-!p2@MYCL1!0.83!5.76!MYCL1;;chr5:134369905..134369972,-!p1@PITX1!0.82!8.87!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.81!7.09!TFAP2C;;chr1:40367530..40367597,-!p1@MYCL1!0.80!10.20!MYCL1;;chr3:12330560..12330579,+!p1@PPARG!0.80!6.21!PPARG;;chr20:18038521..18038571,-!p1@OVOL2!0.80!5.32!OVOL2;;chr14:37131058..37131139,+!p1@PAX9!0.80!5.32!PAX9;;chr17:70117153..70117174,+!p1@SOX9!0.79!58.53!SOX9;;chr2:43453734..43453751,-!p1@ZFP36L2!0.78!589.32!ZFP36L2;;chr11:65667884..65667895,-!p2@FOSL1!0.78!21.28!FOSL1;;chr1:935398..935465,-!p2@HES4!0.77!10.64!HES4;;chr11:34645791..34645836,+!p3@EHF!0.77!4.88!EHF;;chr11:65554563..65554576,+!p2@OVOL1!0.77!4.88!OVOL1;;chr3:189507460..189507471,+!p3@TP63!0.77!4.88!TP63;;chr3:193853927..193853944,+!p1@HES1!0.76!170.72!HES1;;chr11:47236584..47236679,+!p1@DDB2!0.76!56.76!DDB2;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.17!ETV4;;chr19:33793430..33793447,-!p1@CEBPA!0.76!21.73!CEBPA;;chr16:79633894..79633954,-!p3@MAF!0.76!9.76!MAF;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.76!HMGA2;;chr7:27135591..27135658,-!p1@HOXA1!0.76!9.76!HOXA1;;chr3:5021113..5021180,+!p1@BHLHE40!0.75!357.40!BHLHE40;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.65!HOXB7;;chr15:83953694..83953708,-!p4@BNC1!0.74!4.43!BNC1;;chr3:111314230..111314241,-!p2@ZBED2!0.74!4.43!ZBED2;;chr12:54332608..54332636,+!p1@HOXC13!0.74!4.43!HOXC13;;chr5:2751762..2751784,-!p1@IRX2!0.74!4.43!IRX2;;chr6:10419824..10419840,-!p9@TFAP2A!0.74!4.43!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!0.74!4.43!HOXA3;;chr9:137218281..137218340,+!p1@RXRA!0.73!139.24!RXRA;;chr2:60780607..60780624,-!p2@BCL11A!0.73!14.63!BCL11A;;chr10:48355030..48355090,+!p1@ZNF488!0.73!5.76!ZNF488;;chr2:60778035..60778060,-!p4@BCL11A!0.73!5.32!BCL11A;;chr6:1389789..1389821,+!p1@FOXF2!0.70!5.76!FOXF2;;chr6:10419768..10419819,-!p6@TFAP2A!0.70!3.99!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!0.70!3.99!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.70!3.99!SMAD3;;chr19:20278043..20278054,+!p2@ZNF486!0.70!3.99!ZNF486;;chr2:176969097..176969109,+!p3@HOXD11!0.70!3.99!HOXD11;;chr2:176969124..176969155,+!p5@HOXD11!0.70!3.99!HOXD11;;chr11:34642656..34642667,+!p2@EHF!0.70!3.99!EHF;;chr6:21597765..21597779,+!p2@SOX4!0.69!35.92!SOX4;;chr21:40177845..40177863,+!p1@ETS2!0.68!261.18!ETS2;;chr1:935467..935484,-!p1@HES4!0.68!19.07!HES4;;chr10:104155480..104155534,+!p2@NFKB2!0.67!27.49!NFKB2;;chr22:30162893..30162907,-!p2@ZMAT5!0.67!4.88!ZMAT5;;chr15:67418047..67418093,+!p4@SMAD3!0.67!4.88!SMAD3;;chr19:17356697..17356762,-!p1@NR2F6!0.66!56.76!NR2F6;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.98!BHLHE40;;chr20:42136308..42136358,+!p2@L3MBTL1!0.66!4.88!L3MBTL;;chr2:45236540..45236577,-!p1@SIX2!0.66!3.55!SIX2;;chr3:189507523..189507535,+!p5@TP63!0.66!3.55!TP63;;chr15:101069113..101069169,-!p1@CERS3!0.66!3.55!CERS3;;chr17:45928521..45928539,-!p1@SP6!0.66!3.55!SP6;;chr5:2751785..2751808,-!p2@IRX2!0.66!3.55!IRX2;;chr11:615570..615721,-!p2@IRF7!0.65!7.54!IRF7;;chr1:10754477..10754517,-!p1@CASZ1!0.65!6.21!CASZ1;;chr15:67418119..67418162,+!p5@SMAD3!0.65!3.99!SMAD3;;chr12:66218598..66218645,+!p2@HMGA2!0.64!18.18!HMGA2;;chr12:27485762..27485776,+!p3@ARNTL2!0.64!10.20!ARNTL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.64!3.99!TFAP2A;;chr14:23755297..23755350,-!p1@HOMEZ!0.63!46.56!HOMEZ;;chr1:59249732..59249749,-!p2@JUN!0.63!46.56!JUN;;chr19:4065485..4065546,-!p2@ZBTB7A!0.63!34.14!ZBTB7A;;chr19:15543565..15543579,-!p2@WIZ!0.63!16.85!WIZ;;chr6:21593973..21593988,+!p1@SOX4!0.62!137.02!SOX4;;chr17:17726907..17726958,-!p2@SREBF1!0.62!23.06!SREBF1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.61!376.47!ZFP36L1;;chr1:59249707..59249727,-!p1@JUN!0.61!154.76!JUN;;chr11:64073022..64073056,+!p1@ESRRA!0.61!44.34!ESRRA;;chr19:45579725..45579743,-!p1@ZNF296!0.61!16.41!ZNF296;;chr1:10856694..10856715,-!p3@CASZ1!0.61!3.10!CASZ1;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.61!3.10!PRDM11;;chr5:50679228..50679288,+!p1@ISL1!0.61!3.10!ISL1;;chr7:27196217..27196246,-!p2@HOXA7!0.61!3.10!HOXA7;;chr8:102504690..102504704,+!p3@GRHL2!0.61!3.10!GRHL2;;chr8:102504979..102505010,+!p2@GRHL2!0.61!3.10!GRHL2;;chr15:67430351..67430366,+!p10@SMAD3!0.61!3.10!SMAD3;;chr17:36105042..36105060,-!p1@HNF1B!0.61!3.10!HNF1B;;chr17:46682321..46682362,-!p1@HOXB6!0.61!3.10!HOXB6;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.10!HOXB9;;chr18:45663490..45663528,-!p2@ZBTB7C!0.61!3.10!ZBTB7C;;chr2:242556880..242556899,-!p5@THAP4!0.61!3.10!THAP4;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.10!SIX2;;chr1:8926441..8926473,-!p10@ENO1!0.60!4.88!ENO1;;chr2:46524865..46524870,+!p9@EPAS1!0.60!3.55!EPAS1;;chr8:48650715..48650735,-!p1@CEBPD!0.59!451.41!CEBPD;;chr22:42229246..42229270,+!p2@SREBF2!0.59!43.90!SREBF2;;chr6:35465058..35465077,-!p2@TEAD3!0.59!3.10!TEAD3;;chr19:12902289..12902307,+!p1@JUNB!0.58!802.61!JUNB;;chr16:79634595..79634620,-!p2@MAF!0.58!5.76!MAF;;chr20:2673383..2673441,+!p1@EBF4!0.58!4.88!EBF4;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.88!ZFP64;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.43!HMGA2;;chr6:7108569..7108683,+!p3@RREB1!0.57!12.86!RREB1;;chr14:61116183..61116208,-!p1@SIX1!0.57!12.42!SIX1;;chr19:52674853..52674892,-!p2@ZNF836!0.57!8.43!ZNF836;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.80!TAX1BP3;;chr2:208030647..208030689,-!p1@KLF7!0.56!27.05!KLF7;;chr11:62369204..62369217,-!p7@MTA2!0.56!6.65!MTA2;;chr12:66218378..66218401,+!p6@HMGA2!0.56!4.43!HMGA2;;chr10:77161650..77161661,-!p4@ZNF503!0.56!3.99!ZNF503;;chr22:19746969..19746987,+!p2@TBX1!0.56!2.66!TBX1;;chr2:113994526..113994556,-!p3@PAX8!0.56!2.66!PAX8;;chr3:138665937..138665968,-!p1@FOXL2!0.56!2.66!FOXL2;;chr20:50722202..50722217,-!p7@ZFP64!0.56!2.66!ZFP64;;chr17:36105074..36105086,-!p2@HNF1B!0.56!2.66!HNF1B;;chr17:7492504..7492520,-!p3@SOX15!0.56!2.66!SOX15;;chr5:134369879..134369898,-!p2@PITX1!0.56!2.66!PITX1;;chr5:174151612..1741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|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.68!532.12!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.26!181.81!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.13!134.36!HES2;;chr17:7493405..7493419,-!p1@SOX15!2.09!123.27!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.90!118.40!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.84!76.71!ZNF385A;;chr3:189507432..189507459,+!p1@TP63!1.78!58.98!TP63;;chr4:57547454..57547469,-!p1@HOPX!1.74!53.66!HOPX;;chr17:80797886..80797906,-!p1@ZNF750!1.73!52.77!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.71!102.43!SOX15;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!54.99!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!62.08!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.59!37.69!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!1.58!42.57!BNC1;;chr8:10588010..10588030,-!p1@SOX7!1.55!34.59!SOX7;;chr6:34524093..34524135,-!p1@SPDEF!1.53!32.81!SPDEF;;chr19:45908292..45908374,-!p1@PPP1R13L!1.49!252.31!PPP1R13L;;chr11:34642612..34642646,+!p1@EHF!1.49!30.15!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.49!29.71!ZBED2;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!45.23!FOXQ1;;chr6:34524025..34524045,-!p3@SPDEF!1.46!27.94!SPDEF;;chr15:67458861..67458879,+!p17@SMAD3!1.43!26.16!SMAD3;;chr6:34524049..34524089,-!p2@SPDEF!1.42!25.28!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!1.40!28.82!GATA3;;chr2:176969179..176969226,+!p2@HOXD11!1.36!22.17!HOXD11;;chr11:65554528..65554546,+!p1@OVOL1!1.33!20.40!OVOL1;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.51!HOXA9;;chr1:209979449..209979460,-!p3@IRF6!1.29!18.62!IRF6;;chr13:73633131..73633149,+!p1@KLF5!1.26!178.70!KLF5;;chr2:46524897..46524911,+!p2@EPAS1!1.26!47.45!EPAS1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.85!ELF3;;chr22:19748231..19748317,+!p1@TBX1!1.24!16.41!TBX1;;chr7:96654133..96654150,-!p1@DLX5!1.22!15.52!DLX5;;chr6:10413188..10413249,-!p7@TFAP2A!1.17!13.75!TFAP2A;;chr14:38064429..38064486,-!p1@FOXA1!1.16!13.30!FOXA1;;chr1:24645832..24645853,+!p1@GRHL3!1.14!12.86!GRHL3;;chr8:49833948..49833973,-!p2@SNAI2!1.11!75.38!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.97!GRHL2;;chr16:86612320..86612394,+!p1@FOXL1!1.11!11.97!FOXL1;;chr8:49833978..49833996,-!p1@SNAI2!1.10!235.02!SNAI2;;chr17:45928443..45928473,-!p2@SP6!1.10!11.53!SP6;;chr7:27205136..27205164,-!p1@HOXA9!1.08!11.09!HOXA9;;chr12:53625966..53626012,-!p2@RARG!1.07!28.82!RARG;;chr6:10412576..10412599,-!p5@TFAP2A!1.07!10.64!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.07!10.64!ELF3;;chr1:209979375..209979386,-!p4@IRF6!1.07!10.64!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.94!HMGA2;;chr6:10415484..10415508,-!p3@TFAP2A!1.05!10.20!TFAP2A;;chr1:37940170..37940190,+!p1@ZC3H12A!1.03!121.06!ZC3H12A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.03!9.76!TFCP2L1;;chr2:46524878..46524891,+!p3@EPAS1!1.02!16.85!EPAS1;;chr17:80797863..80797874,-!p2@ZNF750!1.01!9.31!ZNF750;;chr11:129245526..129245553,+!p1@BARX2!1.01!9.31!BARX2;;chr10:8096772..8096787,+!p2@GATA3!1.00!10.64!GATA3;;chr1:2461692..2461710,-!p1@HES5!0.97!8.43!HES5;;chr16:79634624..79634642,-!p1@MAF!0.95!31.93!MAF;;chr2:176994408..176994492,+!p1@HOXD8!0.95!7.98!HOXD8;;chr17:38465441..38465481,+!p6@RARA!0.93!9.31!RARA;;chr17:46806067..46806097,-!p1@HOXB13!0.93!7.54!HOXB13;;chr2:10091815..10091864,+!p1@GRHL1!0.92!9.76!GRHL1;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.97!TBX3;;chr19:45908278..45908282,-!p5@PPP1R13L!0.91!7.09!PPP1R13L;;chr1:24645921..24645973,+!p2@GRHL3!0.91!7.09!GRHL3;;chr14:21566731..21566836,-!p1@ZNF219!0.90!77.60!ZNF219;;chr3:5021026..5021035,+!p5@BHLHE40!0.89!8.43!BHLHE40;;chr10:8095593..8095625,+!p3@GATA3!0.89!7.98!GATA3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.88!490.43!TAX1BP3;;chr19:42636586..42636607,-!p1@POU2F2!0.88!19.07!POU2F2;;chr6:1312155..1312187,+!p2@FOXQ1!0.88!6.65!FOXQ1;;chr7:96654026..96654061,-!p2@DLX5!0.88!6.65!DLX5;;chr17:38465413..38465438,+!p5@RARA!0.87!10.64!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.86!10.64!MSX2;;chr6:106546808..106546833,+!p3@PRDM1!0.86!7.98!PRDM1;;chr1:10856665..10856683,-!p4@CASZ1!0.86!6.21!CASZ1;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.20!NR2F6;;chr8:128748308..128748324,+!p2@MYC!0.83!172.49!MYC;;chr17:26833339..26833378,+!p1@FOXN1!0.83!5.76!FOXN1;;chr1:24646263..24646277,+!p4@GRHL3!0.83!5.76!GRHL3;;chr1:40367668..40367684,-!p2@MYCL1!0.83!5.76!MYCL1;;chr5:134369905..134369972,-!p1@PITX1!0.82!8.87!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!0.81!7.09!TFAP2C;;chr1:40367530..40367597,-!p1@MYCL1!0.80!10.20!MYCL1;;chr3:12330560..12330579,+!p1@PPARG!0.80!6.21!PPARG;;chr20:18038521..18038571,-!p1@OVOL2!0.80!5.32!OVOL2;;chr14:37131058..37131139,+!p1@PAX9!0.80!5.32!PAX9;;chr17:70117153..70117174,+!p1@SOX9!0.79!58.53!SOX9;;chr2:43453734..43453751,-!p1@ZFP36L2!0.78!589.32!ZFP36L2;;chr11:65667884..65667895,-!p2@FOSL1!0.78!21.28!FOSL1;;chr1:935398..935465,-!p2@HES4!0.77!10.64!HES4;;chr11:34645791..34645836,+!p3@EHF!0.77!4.88!EHF;;chr11:65554563..65554576,+!p2@OVOL1!0.77!4.88!OVOL1;;chr3:189507460..189507471,+!p3@TP63!0.77!4.88!TP63;;chr3:193853927..193853944,+!p1@HES1!0.76!170.72!HES1;;chr11:47236584..47236679,+!p1@DDB2!0.76!56.76!DDB2;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.17!ETV4;;chr19:33793430..33793447,-!p1@CEBPA!0.76!21.73!CEBPA;;chr16:79633894..79633954,-!p3@MAF!0.76!9.76!MAF;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.76!HMGA2;;chr7:27135591..27135658,-!p1@HOXA1!0.76!9.76!HOXA1;;chr3:5021113..5021180,+!p1@BHLHE40!0.75!357.40!BHLHE40;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.65!HOXB7;;chr15:83953694..83953708,-!p4@BNC1!0.74!4.43!BNC1;;chr3:111314230..111314241,-!p2@ZBED2!0.74!4.43!ZBED2;;chr12:54332608..54332636,+!p1@HOXC13!0.74!4.43!HOXC13;;chr5:2751762..2751784,-!p1@IRX2!0.74!4.43!IRX2;;chr6:10419824..10419840,-!p9@TFAP2A!0.74!4.43!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!0.74!4.43!HOXA3;;chr9:137218281..137218340,+!p1@RXRA!0.73!139.24!RXRA;;chr2:60780607..60780624,-!p2@BCL11A!0.73!14.63!BCL11A;;chr10:48355030..48355090,+!p1@ZNF488!0.73!5.76!ZNF488;;chr2:60778035..60778060,-!p4@BCL11A!0.73!5.32!BCL11A;;chr6:1389789..1389821,+!p1@FOXF2!0.70!5.76!FOXF2;;chr6:10419768..10419819,-!p6@TFAP2A!0.70!3.99!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!0.70!3.99!HOXA11;;chr15:67458836..67458859,+!p22@SMAD3!0.70!3.99!SMAD3;;chr19:20278043..20278054,+!p2@ZNF486!0.70!3.99!ZNF486;;chr2:176969097..176969109,+!p3@HOXD11!0.70!3.99!HOXD11;;chr2:176969124..176969155,+!p5@HOXD11!0.70!3.99!HOXD11;;chr11:34642656..34642667,+!p2@EHF!0.70!3.99!EHF;;chr6:21597765..21597779,+!p2@SOX4!0.69!35.92!SOX4;;chr21:40177845..40177863,+!p1@ETS2!0.68!261.18!ETS2;;chr1:935467..935484,-!p1@HES4!0.68!19.07!HES4;;chr10:104155480..104155534,+!p2@NFKB2!0.67!27.49!NFKB2;;chr22:30162893..30162907,-!p2@ZMAT5!0.67!4.88!ZMAT5;;chr15:67418047..67418093,+!p4@SMAD3!0.67!4.88!SMAD3;;chr19:17356697..17356762,-!p1@NR2F6!0.66!56.76!NR2F6;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.98!BHLHE40;;chr20:42136308..42136358,+!p2@L3MBTL1!0.66!4.88!L3MBTL;;chr2:45236540..45236577,-!p1@SIX2!0.66!3.55!SIX2;;chr3:189507523..189507535,+!p5@TP63!0.66!3.55!TP63;;chr15:101069113..101069169,-!p1@CERS3!0.66!3.55!CERS3;;chr17:45928521..45928539,-!p1@SP6!0.66!3.55!SP6;;chr5:2751785..2751808,-!p2@IRX2!0.66!3.55!IRX2;;chr11:615570..615721,-!p2@IRF7!0.65!7.54!IRF7;;chr1:10754477..10754517,-!p1@CASZ1!0.65!6.21!CASZ1;;chr15:67418119..67418162,+!p5@SMAD3!0.65!3.99!SMAD3;;chr12:66218598..66218645,+!p2@HMGA2!0.64!18.18!HMGA2;;chr12:27485762..27485776,+!p3@ARNTL2!0.64!10.20!ARNTL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.64!3.99!TFAP2A;;chr14:23755297..23755350,-!p1@HOMEZ!0.63!46.56!HOMEZ;;chr1:59249732..59249749,-!p2@JUN!0.63!46.56!JUN;;chr19:4065485..4065546,-!p2@ZBTB7A!0.63!34.14!ZBTB7A;;chr19:15543565..15543579,-!p2@WIZ!0.63!16.85!WIZ;;chr6:21593973..21593988,+!p1@SOX4!0.62!137.02!SOX4;;chr17:17726907..17726958,-!p2@SREBF1!0.62!23.06!SREBF1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.61!376.47!ZFP36L1;;chr1:59249707..59249727,-!p1@JUN!0.61!154.76!JUN;;chr11:64073022..64073056,+!p1@ESRRA!0.61!44.34!ESRRA;;chr19:45579725..45579743,-!p1@ZNF296!0.61!16.41!ZNF296;;chr1:10856694..10856715,-!p3@CASZ1!0.61!3.10!CASZ1;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.61!3.10!PRDM11;;chr5:50679228..50679288,+!p1@ISL1!0.61!3.10!ISL1;;chr7:27196217..27196246,-!p2@HOXA7!0.61!3.10!HOXA7;;chr8:102504690..102504704,+!p3@GRHL2!0.61!3.10!GRHL2;;chr8:102504979..102505010,+!p2@GRHL2!0.61!3.10!GRHL2;;chr15:67430351..67430366,+!p10@SMAD3!0.61!3.10!SMAD3;;chr17:36105042..36105060,-!p1@HNF1B!0.61!3.10!HNF1B;;chr17:46682321..46682362,-!p1@HOXB6!0.61!3.10!HOXB6;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.10!HOXB9;;chr18:45663490..45663528,-!p2@ZBTB7C!0.61!3.10!ZBTB7C;;chr2:242556880..242556899,-!p5@THAP4!0.61!3.10!THAP4;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.10!SIX2;;chr1:8926441..8926473,-!p10@ENO1!0.60!4.88!ENO1;;chr2:46524865..46524870,+!p9@EPAS1!0.60!3.55!EPAS1;;chr8:48650715..48650735,-!p1@CEBPD!0.59!451.41!CEBPD;;chr22:42229246..42229270,+!p2@SREBF2!0.59!43.90!SREBF2;;chr6:35465058..35465077,-!p2@TEAD3!0.59!3.10!TEAD3;;chr19:12902289..12902307,+!p1@JUNB!0.58!802.61!JUNB;;chr16:79634595..79634620,-!p2@MAF!0.58!5.76!MAF;;chr20:2673383..2673441,+!p1@EBF4!0.58!4.88!EBF4;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.88!ZFP64;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.43!HMGA2;;chr6:7108569..7108683,+!p3@RREB1!0.57!12.86!RREB1;;chr14:61116183..61116208,-!p1@SIX1!0.57!12.42!SIX1;;chr19:52674853..52674892,-!p2@ZNF836!0.57!8.43!ZNF836;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.80!TAX1BP3;;chr2:208030647..208030689,-!p1@KLF7!0.56!27.05!KLF7;;chr11:62369204..62369217,-!p7@MTA2!0.56!6.65!MTA2;;chr12:66218378..66218401,+!p6@HMGA2!0.56!4.43!HMGA2;;chr10:77161650..77161661,-!p4@ZNF503!0.56!3.99!ZNF503;;chr22:19746969..19746987,+!p2@TBX1!0.56!2.66!TBX1;;chr2:113994526..113994556,-!p3@PAX8!0.56!2.66!PAX8;;chr3:138665937..138665968,-!p1@FOXL2!0.56!2.66!FOXL2;;chr20:50722202..50722217,-!p7@ZFP64!0.56!2.66!ZFP64;;chr17:36105074..36105086,-!p2@HNF1B!0.56!2.66!HNF1B;;chr17:7492504..7492520,-!p3@SOX15!0.56!2.66!SOX15;;chr5:134369879..134369898,-!p2@PITX1!0.56!2.66!PITX1;;chr5:174151612..1741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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000731;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor3.CNhs12122.11681-122H7.hg38.nobarcode.ctss.bed.gz
|id=FF:11681-122H7
|id=FF:11681-122H7
|is_a=EFO:0002091;;FF:0000191
|is_a=EFO:0002091;;FF:0000191
|is_obsolete=
|is_obsolete=
|library_id=CNhs12122
|library_id_phase_based=2:CNhs12122
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11681
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11681
|name=Urothelial Cells, donor3
|name=Urothelial Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12122,LSID839,release011,COMPLETED
|profile_hcage=CNhs12122,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|sample_cell_line=
Line 82: Line 100:
|top_motifs=TP53:3.0269227113;PPARG:2.2320207601;TFCP2:2.04961260874;ZEB1:1.95521158261;TBX4,5:1.89270941499;HAND1,2:1.77736283905;XCPE1{core}:1.77636372667;ZNF423:1.72343624177;VSX1,2:1.72306856181;SNAI1..3:1.69563763438;ZNF148:1.68471657016;MYOD1:1.33167179217;TBP:1.26388184885;GTF2A1,2:1.20399003696;NR5A1,2:1.19534226961;SP1:1.16569780368;TFAP2{A,C}:1.14677294336;GLI1..3:1.06833246764;ADNP_IRX_SIX_ZHX:1.02955240679;TEAD1:0.976898028238;NKX2-3_NKX2-5:0.923177022864;EBF1:0.911101194786;LMO2:0.910074824585;FOXM1:0.882649394185;ONECUT1,2:0.784971248321;ZIC1..3:0.738807399224;POU2F1..3:0.724814701011;PAX1,9:0.69317861025;TLX1..3_NFIC{dimer}:0.680378689241;ZBTB6:0.645474637628;FOS_FOS{B,L1}_JUN{B,D}:0.631150830055;IKZF1:0.594729097237;ZNF238:0.594333835941;RREB1:0.526345437026;ESR1:0.518583483096;POU6F1:0.517952861121;TFAP4:0.509716841287;RXR{A,B,G}:0.506773283995;TEF:0.504569076377;LHX3,4:0.488136620566;MTF1:0.486062977728;GZF1:0.468994118379;BACH2:0.468542982581;SMAD1..7,9:0.462426531987;ARID5B:0.421413289048;FOSL2:0.366282090257;RXRA_VDR{dimer}:0.354144811573;MAZ:0.310204200577;NANOG:0.30212750885;bHLH_family:0.280565083134;REST:0.267198322616;TOPORS:0.24636562382;EP300:0.234061301647;HIC1:0.213878467114;MED-1{core}:0.191965416953;HMX1:0.189309779426;HNF4A_NR2F1,2:0.185571308044;UFEwm:0.162663445521;STAT5{A,B}:0.121873865741;FOXL1:0.0806148101763;POU1F1:0.0726271036068;SOX2:0.0700922911451;TFAP2B:0.0655297444902;CEBPA,B_DDIT3:0.0630436969344;GFI1B:0.0156211066402;NFE2:0.013900930394;LEF1_TCF7_TCF7L1,2:0.00156229847333;RBPJ:-0.00522772843709;SPZ1:-0.0254860741463;NKX2-2,8:-0.0279775285193;HNF1A:-0.0385444232596;HOX{A6,A7,B6,B7}:-0.0427559460106;HLF:-0.0772119919766;PITX1..3:-0.0776099981922;FOXQ1:-0.0781403237692;GTF2I:-0.116572247682;HOX{A4,D4}:-0.122036298613;SOX17:-0.127205270703;NKX3-2:-0.131384875142;NFKB1_REL_RELA:-0.138222338534;TLX2:-0.144591546835;NR1H4:-0.164413407148;ALX4:-0.189880420726;KLF4:-0.196634623852;AR:-0.205367322865;NFIL3:-0.206856608313;HSF1,2:-0.219075792075;NR6A1:-0.227858250969;T:-0.228714982331;NR3C1:-0.247790642824;IRF7:-0.253454575382;PAX5:-0.266356834779;GATA6:-0.301407329215;OCT4_SOX2{dimer}:-0.323761532841;STAT2,4,6:-0.328200267968;DBP:-0.339630597775;PAX4:-0.340258765786;CDC5L:-0.346729851563;HOX{A5,B5}:-0.361420619456;ETS1,2:-0.390581259344;JUN:-0.3973506745;NFE2L2:-0.434005698406;MAFB:-0.440656210123;SRF:-0.450498907856;NHLH1,2:-0.45824496459;SPIB:-0.458978056522;PDX1:-0.474800742778;POU5F1:-0.475510080186;MYBL2:-0.479754805514;CRX:-0.483796830334;AIRE:-0.494539221278;ZFP161:-0.499944161292;SOX{8,9,10}:-0.505963421474;EGR1..3:-0.509034868835;ATF2:-0.520739083885;MEF2{A,B,C,D}:-0.532399056194;PBX1:-0.53304316599;NKX2-1,4:-0.54017684141;NFE2L1:-0.544628667815;PAX2:-0.550596453966;POU3F1..4:-0.550971286486;MTE{core}:-0.57306622028;ESRRA:-0.593408050853;PATZ1:-0.601459854591;FOX{F1,F2,J1}:-0.619204661174;HES1:-0.638565346571;PAX6:-0.651373188837;SPI1:-0.663817476939;ZNF143:-0.674994343417;TFDP1:-0.701090419625;RUNX1..3:-0.704330770543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.714513940908;RORA:-0.719685748961;MYFfamily:-0.762741514139;HIF1A:-0.763595648791;FOXN1:-0.769358921168;ATF6:-0.778989382142;IRF1,2:-0.807012967133;FOX{D1,D2}:-0.813830094934;CUX2:-0.816392701345;RFX1:-0.820705297222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.829029733433;TAL1_TCF{3,4,12}:-0.870035040741;GCM1,2:-0.871583918472;NFY{A,B,C}:-0.898224053019;PAX8:-0.928739479285;GFI1:-0.934317648317;SOX5:-0.943207869677;EVI1:-0.954097243769;RFX2..5_RFXANK_RFXAP:-0.956732430061;ZNF384:-0.957793868299;NFIX:-0.984743231594;CDX1,2,4:-0.986149677107;MYB:-1.00427760368;YY1:-1.00961008925;ATF4:-1.01368364633;FOX{I1,J2}:-1.0144474307;E2F1..5:-1.05640931975;NFATC1..3:-1.06960317519;FOXO1,3,4:-1.0712086861;FOXP1:-1.11311520093;ATF5_CREB3:-1.11441700369;EN1,2:-1.12631453983;PRDM1:-1.13194907093;ELF1,2,4:-1.1569882312;DMAP1_NCOR{1,2}_SMARC:-1.1730714569;PAX3,7:-1.17394918179;TGIF1:-1.20473539708;XBP1:-1.21364089308;PRRX1,2:-1.21994386752;HOXA9_MEIS1:-1.22075029726;NKX6-1,2:-1.22684972661;ELK1,4_GABP{A,B1}:-1.23236719734;FOXA2:-1.23429988984;MZF1:-1.25635092825;ALX1:-1.26237120348;BREu{core}:-1.285956956;CREB1:-1.37088454013;SREBF1,2:-1.38212585954;NANOG{mouse}:-1.3863601714;NRF1:-1.45036526549;ZBTB16:-1.4801016311;FOXD3:-1.48887378907;IKZF2:-1.49844586408;HMGA1,2:-1.50333633833;BPTF:-1.54944256563;FOXP3:-1.61581255164;HBP1_HMGB_SSRP1_UBTF:-1.62266343838;GATA4:-1.62910253114;STAT1,3:-1.70025895859;NKX3-1:-1.71103315783;AHR_ARNT_ARNT2:-1.84844135115
|top_motifs=TP53:3.0269227113;PPARG:2.2320207601;TFCP2:2.04961260874;ZEB1:1.95521158261;TBX4,5:1.89270941499;HAND1,2:1.77736283905;XCPE1{core}:1.77636372667;ZNF423:1.72343624177;VSX1,2:1.72306856181;SNAI1..3:1.69563763438;ZNF148:1.68471657016;MYOD1:1.33167179217;TBP:1.26388184885;GTF2A1,2:1.20399003696;NR5A1,2:1.19534226961;SP1:1.16569780368;TFAP2{A,C}:1.14677294336;GLI1..3:1.06833246764;ADNP_IRX_SIX_ZHX:1.02955240679;TEAD1:0.976898028238;NKX2-3_NKX2-5:0.923177022864;EBF1:0.911101194786;LMO2:0.910074824585;FOXM1:0.882649394185;ONECUT1,2:0.784971248321;ZIC1..3:0.738807399224;POU2F1..3:0.724814701011;PAX1,9:0.69317861025;TLX1..3_NFIC{dimer}:0.680378689241;ZBTB6:0.645474637628;FOS_FOS{B,L1}_JUN{B,D}:0.631150830055;IKZF1:0.594729097237;ZNF238:0.594333835941;RREB1:0.526345437026;ESR1:0.518583483096;POU6F1:0.517952861121;TFAP4:0.509716841287;RXR{A,B,G}:0.506773283995;TEF:0.504569076377;LHX3,4:0.488136620566;MTF1:0.486062977728;GZF1:0.468994118379;BACH2:0.468542982581;SMAD1..7,9:0.462426531987;ARID5B:0.421413289048;FOSL2:0.366282090257;RXRA_VDR{dimer}:0.354144811573;MAZ:0.310204200577;NANOG:0.30212750885;bHLH_family:0.280565083134;REST:0.267198322616;TOPORS:0.24636562382;EP300:0.234061301647;HIC1:0.213878467114;MED-1{core}:0.191965416953;HMX1:0.189309779426;HNF4A_NR2F1,2:0.185571308044;UFEwm:0.162663445521;STAT5{A,B}:0.121873865741;FOXL1:0.0806148101763;POU1F1:0.0726271036068;SOX2:0.0700922911451;TFAP2B:0.0655297444902;CEBPA,B_DDIT3:0.0630436969344;GFI1B:0.0156211066402;NFE2:0.013900930394;LEF1_TCF7_TCF7L1,2:0.00156229847333;RBPJ:-0.00522772843709;SPZ1:-0.0254860741463;NKX2-2,8:-0.0279775285193;HNF1A:-0.0385444232596;HOX{A6,A7,B6,B7}:-0.0427559460106;HLF:-0.0772119919766;PITX1..3:-0.0776099981922;FOXQ1:-0.0781403237692;GTF2I:-0.116572247682;HOX{A4,D4}:-0.122036298613;SOX17:-0.127205270703;NKX3-2:-0.131384875142;NFKB1_REL_RELA:-0.138222338534;TLX2:-0.144591546835;NR1H4:-0.164413407148;ALX4:-0.189880420726;KLF4:-0.196634623852;AR:-0.205367322865;NFIL3:-0.206856608313;HSF1,2:-0.219075792075;NR6A1:-0.227858250969;T:-0.228714982331;NR3C1:-0.247790642824;IRF7:-0.253454575382;PAX5:-0.266356834779;GATA6:-0.301407329215;OCT4_SOX2{dimer}:-0.323761532841;STAT2,4,6:-0.328200267968;DBP:-0.339630597775;PAX4:-0.340258765786;CDC5L:-0.346729851563;HOX{A5,B5}:-0.361420619456;ETS1,2:-0.390581259344;JUN:-0.3973506745;NFE2L2:-0.434005698406;MAFB:-0.440656210123;SRF:-0.450498907856;NHLH1,2:-0.45824496459;SPIB:-0.458978056522;PDX1:-0.474800742778;POU5F1:-0.475510080186;MYBL2:-0.479754805514;CRX:-0.483796830334;AIRE:-0.494539221278;ZFP161:-0.499944161292;SOX{8,9,10}:-0.505963421474;EGR1..3:-0.509034868835;ATF2:-0.520739083885;MEF2{A,B,C,D}:-0.532399056194;PBX1:-0.53304316599;NKX2-1,4:-0.54017684141;NFE2L1:-0.544628667815;PAX2:-0.550596453966;POU3F1..4:-0.550971286486;MTE{core}:-0.57306622028;ESRRA:-0.593408050853;PATZ1:-0.601459854591;FOX{F1,F2,J1}:-0.619204661174;HES1:-0.638565346571;PAX6:-0.651373188837;SPI1:-0.663817476939;ZNF143:-0.674994343417;TFDP1:-0.701090419625;RUNX1..3:-0.704330770543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.714513940908;RORA:-0.719685748961;MYFfamily:-0.762741514139;HIF1A:-0.763595648791;FOXN1:-0.769358921168;ATF6:-0.778989382142;IRF1,2:-0.807012967133;FOX{D1,D2}:-0.813830094934;CUX2:-0.816392701345;RFX1:-0.820705297222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.829029733433;TAL1_TCF{3,4,12}:-0.870035040741;GCM1,2:-0.871583918472;NFY{A,B,C}:-0.898224053019;PAX8:-0.928739479285;GFI1:-0.934317648317;SOX5:-0.943207869677;EVI1:-0.954097243769;RFX2..5_RFXANK_RFXAP:-0.956732430061;ZNF384:-0.957793868299;NFIX:-0.984743231594;CDX1,2,4:-0.986149677107;MYB:-1.00427760368;YY1:-1.00961008925;ATF4:-1.01368364633;FOX{I1,J2}:-1.0144474307;E2F1..5:-1.05640931975;NFATC1..3:-1.06960317519;FOXO1,3,4:-1.0712086861;FOXP1:-1.11311520093;ATF5_CREB3:-1.11441700369;EN1,2:-1.12631453983;PRDM1:-1.13194907093;ELF1,2,4:-1.1569882312;DMAP1_NCOR{1,2}_SMARC:-1.1730714569;PAX3,7:-1.17394918179;TGIF1:-1.20473539708;XBP1:-1.21364089308;PRRX1,2:-1.21994386752;HOXA9_MEIS1:-1.22075029726;NKX6-1,2:-1.22684972661;ELK1,4_GABP{A,B1}:-1.23236719734;FOXA2:-1.23429988984;MZF1:-1.25635092825;ALX1:-1.26237120348;BREu{core}:-1.285956956;CREB1:-1.37088454013;SREBF1,2:-1.38212585954;NANOG{mouse}:-1.3863601714;NRF1:-1.45036526549;ZBTB16:-1.4801016311;FOXD3:-1.48887378907;IKZF2:-1.49844586408;HMGA1,2:-1.50333633833;BPTF:-1.54944256563;FOXP3:-1.61581255164;HBP1_HMGB_SSRP1_UBTF:-1.62266343838;GATA4:-1.62910253114;STAT1,3:-1.70025895859;NKX3-1:-1.71103315783;AHR_ARNT_ARNT2:-1.84844135115
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11681-122H7;search_select_hide=table117:FF:11681-122H7
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Urothelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12122
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebladder
dev stageNA
sexNA
ageNA
cell typeurothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC4325
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005902
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12122 CAGE DRX008527 DRR009399
Accession ID Hg19

Library idBAMCTSS
CNhs12122 DRZ000824 DRZ002209
Accession ID Hg38

Library idBAMCTSS
CNhs12122 DRZ012174 DRZ013559
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.333
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.508
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.367
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.036
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.341
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.118
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.447
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.83
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.586
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.293
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0381
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.658
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.00454
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.613
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.594
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0684
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12122

Jaspar motifP-value
MA0002.20.526
MA0003.10.39
MA0004.10.584
MA0006.10.138
MA0007.10.32
MA0009.10.345
MA0014.10.641
MA0017.10.0987
MA0018.20.008
MA0019.10.294
MA0024.10.00284
MA0025.10.559
MA0027.10.897
MA0028.10.00903
MA0029.10.256
MA0030.10.34
MA0031.10.0715
MA0035.20.336
MA0038.10.331
MA0039.20.0365
MA0040.10.314
MA0041.10.352
MA0042.10.664
MA0043.10.00798
MA0046.10.0845
MA0047.20.287
MA0048.10.92
MA0050.10.00186
MA0051.10.00791
MA0052.10.273
MA0055.10.328
MA0057.10.084
MA0058.10.286
MA0059.10.855
MA0060.10.11
MA0061.10.62
MA0062.22.48301e-5
MA0065.20.00833
MA0066.10.0209
MA0067.10.0461
MA0068.10.0147
MA0069.10.807
MA0070.10.893
MA0071.10.668
MA0072.10.619
MA0073.10.918
MA0074.10.45
MA0076.10.0011
MA0077.10.179
MA0078.10.504
MA0079.20.506
MA0080.22.93898e-4
MA0081.10.0107
MA0083.10.603
MA0084.10.173
MA0087.10.622
MA0088.10.721
MA0090.10.0139
MA0091.10.542
MA0092.10.265
MA0093.10.457
MA0099.23.53475e-9
MA0100.10.0417
MA0101.10.63
MA0102.20.0602
MA0103.16.56207e-5
MA0104.20.295
MA0105.10.47
MA0106.11.11382e-5
MA0107.10.955
MA0108.20.00364
MA0111.10.965
MA0112.20.00476
MA0113.10.464
MA0114.10.0712
MA0115.10.812
MA0116.10.21
MA0117.10.324
MA0119.10.081
MA0122.10.976
MA0124.10.457
MA0125.10.268
MA0131.10.157
MA0135.10.046
MA0136.17.74112e-5
MA0137.20.00281
MA0138.20.0469
MA0139.10.433
MA0140.10.829
MA0141.10.327
MA0142.10.219
MA0143.10.689
MA0144.10.556
MA0145.10.0411
MA0146.10.063
MA0147.10.403
MA0148.10.231
MA0149.10.0599
MA0150.10.629
MA0152.10.00288
MA0153.10.0802
MA0154.10.108
MA0155.10.198
MA0156.10.00137
MA0157.10.185
MA0159.10.224
MA0160.10.462
MA0162.10.0933
MA0163.10.431
MA0164.10.619
MA0258.10.031
MA0259.10.388



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12122

Novel motifP-value
10.563
100.54
1000.708
1010.292
1020.323
1030.206
1040.264
1050.108
1060.0139
1070.00651
1080.187
1090.0478
110.134
1100.256
1110.189
1120.329
1130.243
1140.367
1150.1
1160.552
1170.716
1180.796
1190.0598
120.663
1200.0726
1210.547
1220.355
1230.962
1240.296
1250.451
1260.691
1270.1
1280.0299
1290.0317
130.296
1300.474
1310.873
1320.247
1330.0158
1340.339
1350.44
1360.913
1370.284
1380.8
1390.219
140.675
1400.444
1410.913
1420.0151
1430.256
1440.553
1450.124
1460.0438
1470.38
1480.839
1490.248
150.596
1500.243
1510.275
1520.034
1530.473
1540.713
1550.266
1560.0934
1570.336
1580.851
1590.853
160.152
1600.0917
1610.306
1620.104
1630.931
1640.851
1650.326
1660.861
1670.357
1680.469
1690.0449
170.103
180.215
190.348
20.139
200.709
210.919
220.207
230.0928
240.259
250.689
260.261
270.336
280.941
290.653
30.442
300.203
310.375
320.419
330.538
340.385
350.544
360.829
370.453
380.252
390.272
40.334
400.0114
410.816
420.763
430.293
440.217
450.167
460.31
470.376
480.23
490.446
50.79
500.45
510.449
520.2
530.962
540.356
550.315
560.286
570.328
580.729
590.0325
60.513
600.126
610.848
620.76
630.151
640.275
650.0622
660.82
670.732
680.665
690.0422
70.638
702.50053e-4
710.364
720.876
730.0572
740.0225
750.401
760.626
770.0157
780.157
790.161
80.147
800.824
810.774
820.191
830.71
840.855
850.134
860.934
870.359
880.223
890.0732
90.503
900.341
910.252
920.176
930.853
940.371
950.249
960.899
970.908
980.418
990.0375



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12122


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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