FF:10471-106I3: Difference between revisions

Latest revision as of 14:25, 3 June 2020

Name:	renal cell carcinoma cell line:TUHR10TKB
Species:	Human (Homo sapiens)
Library ID:	CNhs11257
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	male
age	69
cell type	unclassifiable
cell line	TUHR10TKB
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005261

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11257		CAGE		DRX007991		DRR008863

Accession ID Hg19

Library id		BAM		CTSS
CNhs11257		DRZ000288		DRZ001673

Accession ID Hg38

Library id		BAM		CTSS
CNhs11257		DRZ011638		DRZ013023

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.12
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.216
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0287
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00309
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.119
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.196
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.191
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.169
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.858
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.191
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0331
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.114
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.00764
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.17
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0637
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.17
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.858
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0944
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11257

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0948
MA0003.1	MA0003.1	0.864
MA0004.1	MA0004.1	0.324
MA0006.1	MA0006.1	0.0813
MA0007.1	MA0007.1	0.117
MA0009.1	MA0009.1	0.047
MA0014.1	MA0014.1	0.26
MA0017.1	MA0017.1	0.348
MA0018.2	MA0018.2	0.128
MA0019.1	MA0019.1	0.7
MA0024.1	MA0024.1	0.575
MA0025.1	MA0025.1	0.563
MA0027.1	MA0027.1	0.87
MA0028.1	MA0028.1	0.0137
MA0029.1	MA0029.1	0.481
MA0030.1	MA0030.1	0.799
MA0031.1	MA0031.1	0.152
MA0035.2	MA0035.2	0.487
MA0038.1	MA0038.1	0.456
MA0039.2	MA0039.2	0.00146
MA0040.1	MA0040.1	0.489
MA0041.1	MA0041.1	0.3
MA0042.1	MA0042.1	0.532
MA0043.1	MA0043.1	0.316
MA0046.1	MA0046.1	2.49638e-7
MA0047.2	MA0047.2	0.801
MA0048.1	MA0048.1	0.144
MA0050.1	MA0050.1	5.66318e-16
MA0051.1	MA0051.1	3.09366e-10
MA0052.1	MA0052.1	0.0438
MA0055.1	MA0055.1	0.00271
MA0057.1	MA0057.1	0.243
MA0058.1	MA0058.1	0.162
MA0059.1	MA0059.1	0.0555
MA0060.1	MA0060.1	0.0875
MA0061.1	MA0061.1	2.83753e-4
MA0062.2	MA0062.2	0.164
MA0065.2	MA0065.2	0.0828
MA0066.1	MA0066.1	0.751
MA0067.1	MA0067.1	0.814
MA0068.1	MA0068.1	0.0171
MA0069.1	MA0069.1	0.43
MA0070.1	MA0070.1	0.498
MA0071.1	MA0071.1	0.606
MA0072.1	MA0072.1	0.301
MA0073.1	MA0073.1	0.418
MA0074.1	MA0074.1	0.528
MA0076.1	MA0076.1	0.0221
MA0077.1	MA0077.1	0.387
MA0078.1	MA0078.1	0.0146
MA0079.2	MA0079.2	0.435
MA0080.2	MA0080.2	2.77783e-10
MA0081.1	MA0081.1	0.00706
MA0083.1	MA0083.1	0.00137
MA0084.1	MA0084.1	0.226
MA0087.1	MA0087.1	0.215
MA0088.1	MA0088.1	0.16
MA0090.1	MA0090.1	0.415
MA0091.1	MA0091.1	0.021
MA0092.1	MA0092.1	0.276
MA0093.1	MA0093.1	0.323
MA0099.2	MA0099.2	0.122
MA0100.1	MA0100.1	0.906
MA0101.1	MA0101.1	8.98368e-4
MA0102.2	MA0102.2	0.333
MA0103.1	MA0103.1	0.0083
MA0104.2	MA0104.2	0.0544
MA0105.1	MA0105.1	4.12581e-4
MA0106.1	MA0106.1	0.00221
MA0107.1	MA0107.1	0.00196
MA0108.2	MA0108.2	2.02888e-7
MA0111.1	MA0111.1	0.611
MA0112.2	MA0112.2	0.225
MA0113.1	MA0113.1	0.351
MA0114.1	MA0114.1	0.00318
MA0115.1	MA0115.1	0.553
MA0116.1	MA0116.1	0.0658
MA0117.1	MA0117.1	0.939
MA0119.1	MA0119.1	0.512
MA0122.1	MA0122.1	0.518
MA0124.1	MA0124.1	0.305
MA0125.1	MA0125.1	0.131
MA0131.1	MA0131.1	0.513
MA0135.1	MA0135.1	0.533
MA0136.1	MA0136.1	2.17602e-7
MA0137.2	MA0137.2	0.927
MA0138.2	MA0138.2	0.283
MA0139.1	MA0139.1	0.392
MA0140.1	MA0140.1	0.111
MA0141.1	MA0141.1	0.53
MA0142.1	MA0142.1	0.0354
MA0143.1	MA0143.1	0.202
MA0144.1	MA0144.1	0.354
MA0145.1	MA0145.1	0.362
MA0146.1	MA0146.1	0.0819
MA0147.1	MA0147.1	0.0183
MA0148.1	MA0148.1	0.108
MA0149.1	MA0149.1	0.275
MA0150.1	MA0150.1	0.959
MA0152.1	MA0152.1	0.851
MA0153.1	MA0153.1	1.49262e-6
MA0154.1	MA0154.1	0.4
MA0155.1	MA0155.1	0.577
MA0156.1	MA0156.1	6.28339e-4
MA0157.1	MA0157.1	0.129
MA0159.1	MA0159.1	0.0638
MA0160.1	MA0160.1	0.857
MA0162.1	MA0162.1	0.472
MA0163.1	MA0163.1	0.151
MA0164.1	MA0164.1	0.928
MA0258.1	MA0258.1	0.36
MA0259.1	MA0259.1	0.00143

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11257

Novel motif	Logo	P-value
1	1	0.25
10	10	0.0763
100	100	0.00731
101	101	0.132
102	102	0.826
103	103	0.314
104	104	0.622
105	105	0.752
106	106	0.113
107	107	0.364
108	108	0.747
109	109	0.189
11	11	0.969
110	110	0.0372
111	111	0.153
112	112	0.379
113	113	0.276
114	114	0.684
115	115	0.797
116	116	0.882
117	117	0.0179
118	118	0.00138
119	119	0.385
12	12	0.115
120	120	0.655
121	121	0.834
122	122	0.0631
123	123	0.428
124	124	0.585
125	125	0.452
126	126	0.498
127	127	0.77
128	128	0.0823
129	129	0.447
13	13	3.63333e-4
130	130	0.122
131	131	0.762
132	132	0.47
133	133	0.161
134	134	0.192
135	135	0.0119
136	136	0.712
137	137	0.546
138	138	0.913
139	139	0.76
14	14	0.66
140	140	0.144
141	141	0.896
142	142	0.133
143	143	0.247
144	144	0.804
145	145	0.606
146	146	0.205
147	147	0.418
148	148	0.554
149	149	0.607
15	15	0.328
150	150	0.743
151	151	0.934
152	152	0.71
153	153	0.446
154	154	0.954
155	155	0.469
156	156	0.984
157	157	0.405
158	158	0.39
159	159	0.264
16	16	0.957
160	160	0.0819
161	161	0.346
162	162	0.528
163	163	0.191
164	164	0.0139
165	165	0.436
166	166	0.146
167	167	0.381
168	168	0.0976
169	169	0.379
17	17	0.528
18	18	0.0866
19	19	0.86
2	2	0.441
20	20	0.00777
21	21	0.347
22	22	0.961
23	23	0.302
24	24	0.809
25	25	0.633
26	26	0.0853
27	27	0.23
28	28	0.868
29	29	0.00781
3	3	0.0607
30	30	0.38
31	31	0.479
32	32	0.0887
33	33	0.348
34	34	0.203
35	35	0.439
36	36	0.0565
37	37	0.34
38	38	0.68
39	39	0.703
4	4	0.791
40	40	0.0349
41	41	0.0604
42	42	0.607
43	43	0.611
44	44	0.191
45	45	0.535
46	46	0.904
47	47	0.752
48	48	0.755
49	49	0.58
5	5	0.749
50	50	0.91
51	51	0.721
52	52	0.245
53	53	0.846
54	54	0.287
55	55	0.535
56	56	0.556
57	57	0.216
58	58	0.264
59	59	0.75
6	6	0.164
60	60	0.756
61	61	0.141
62	62	0.945
63	63	0.971
64	64	0.945
65	65	0.878
66	66	0.974
67	67	0.491
68	68	0.773
69	69	0.13
7	7	0.696
70	70	0.268
71	71	0.00489
72	72	0.999
73	73	0.541
74	74	0.272
75	75	0.0694
76	76	0.0159
77	77	0.468
78	78	0.0788
79	79	0.759
8	8	0.499
80	80	0.00321
81	81	0.821
82	82	0.871
83	83	0.996
84	84	0.725
85	85	0.794
86	86	0.776
87	87	0.258
88	88	0.636
89	89	0.366
9	9	0.0325
90	90	0.349
91	91	0.973
92	92	0.805
93	93	0.989
94	94	0.982
95	95	0.173
96	96	0.558
97	97	0.723
98	98	0.85
99	99	0.587

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11257

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103732 TUHR-10TKB cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100067 (kidney cell line sample)
0101120 (epithelial cell line sample)
0103192 (renal cancer cell line sample)
0100383 (renal cell carcinoma cell line sample)
0103732 (TUHR-10TKB cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005261
+|accession_numbers=CAGE;DRX007991;DRR008863;DRZ000288;DRZ001673;DRZ011638;DRZ013023
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:26277817..26277863,-!p2@BHLHE41!2.13!177.25!BHLHE41;;chr7:27205106..27205134,-!p2@HOXA9!1.92!83.13!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!1.76!56.85!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!1.73!53.03!HOXA11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.16!POU3F3;;chr1:201979703..201979721,+!p2@ELF3!1.68!46.82!ELF3;;chr2:176969228..176969260,+!p1@HOXD11!1.68!46.34!HOXD11;;chr12:26277798..26277809,-!p5@BHLHE41!1.51!31.05!BHLHE41;;chr1:201979743..201979762,+!p1@ELF3!1.48!29.14!ELF3;;chr2:114036488..114036504,-!p1@PAX8!1.40!24.37!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.38!22.93!HNF1B;;chr5:142780189..142780223,-!p6@NR3C1!1.33!20.54!NR3C1;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.07!HOXA11;;chr5:142780237..142780261,-!p7@NR3C1!1.27!17.68!NR3C1;;chr2:176994408..176994492,+!p1@HOXD8!1.27!17.68!HOXD8;;chr16:67198633..67198671,+!p1@HSF4!1.26!17.20!HSF4;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.24!HOXA10;;chr8:28243813..28243839,-!p4@ZNF395!1.22!27.71!ZNF395;;chr10:102505493..102505546,+!p2@PAX2!1.21!15.29!PAX2;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.29!KDM5D;;chr17:36105074..36105086,-!p2@HNF1B!1.20!14.81!HNF1B;;chr17:46682321..46682362,-!p1@HOXB6!1.20!14.81!HOXB6;;chr7:26191809..26191890,+!p1@NFE2L3!1.19!71.66!NFE2L3;;chr2:176969179..176969226,+!p2@HOXD11!1.17!13.85!HOXD11;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.50!TFAP2A;;chr5:142780280..142780294,-!p16@NR3C1!1.14!12.90!NR3C1;;chr3:141043020..141043049,+!p17@ZBTB38!1.14!12.90!ZBTB38;;chr12:26277956..26277980,-!p1@BHLHE41!1.13!44.43!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.68!BHLHE41;;chr11:129245526..129245553,+!p1@BARX2!1.11!11.94!BARX2;;chr17:38465413..38465438,+!p5@RARA!1.10!18.63!RARA;;chr17:46692624..46692659,-!p3@HOXB8!1.10!11.47!HOXB8;;chr17:46622440..46622477,-!p5@HOXB2!1.07!11.94!HOXB2;;chr16:67198683..67198698,+!p2@HSF4!1.06!10.51!HSF4;;chr7:27224911..27224922,-!p5@HOXA11!1.06!10.51!HOXA11;;chr18:6414884..6414942,-!p1@L3MBTL4!1.05!12.90!L3MBTL4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.04!10.03!POU3F3;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.33!HOXB7;;chr11:65430554..65430579,-!p3@RELA!1.02!24.37!RELA;;chr1:151804244..151804310,-!p1@RORC!1.02!9.56!RORC;;chr15:67357924..67357952,+!p2@SMAD3!1.01!62.11!SMAD3;;chr15:100106670..100106697,+!p4@MEF2A!1.01!15.29!MEF2A;;chr6:10412392..10412409,-!p4@TFAP2A!1.01!10.51!TFAP2A;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.00!9.56!GLIS1;;chr8:76319850..76319870,+!p4@HNF4G!1.00!9.08!HNF4G;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.92!PPP1R13L;;chr17:36104873..36104903,-!p3@HNF1B!0.98!8.60!HNF1B;;chr2:178128149..178128198,-!p2@NFE2L2!0.97!45.39!NFE2L2;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!222.15!TSC22D3;;chr19:58071201..58071238,-!p1@ZNF550!0.96!29.14!ZNF550;;chr1:221052700..221052730,+!p5@HLX!0.96!12.42!HLX;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.03!TFAP2A;;chr15:60884747..60884774,-!p3@RORA!0.94!19.59!RORA;;chr11:129245736..129245758,+!p2@BARX2!0.94!7.64!BARX2;;chr6:10412477..10412490,-!p10@TFAP2A!0.94!7.64!TFAP2A;;chr7:27169801..27169844,-!p2@HOXA4!0.94!7.64!HOXA4;;chr6:1312325..1312340,+!p1@FOXQ1!0.93!12.42!FOXQ1;;chr6:36355513..36355578,-!p2@ETV7!0.93!9.56!ETV7;;chr16:54320646..54320672,-!p2@IRX3!0.91!10.99!IRX3;;chr6:100912785..100912822,-!p1@SIM1!0.91!7.17!SIM1;;chr16:54320675..54320715,-!p1@IRX3!0.90!15.29!IRX3;;chr6:45390002..45390023,+!p6@RUNX2!0.90!12.42!RUNX2;;chr7:28448965..28448994,+!p2@CREB5!0.89!24.84!CREB5;;chr19:37096139..37096170,-!p2@ZNF529!0.89!19.59!ZNF529;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.81!C11orf9;;chr7:27170359..27170381,-!p1@HOXA4!0.89!6.69!HOXA4;;chr7:27190547..27190591,-!p1@HOXA6!0.89!6.69!HOXA6;;chr10:70320074..70320106,+!p1@TET1!0.88!13.85!TET1;;chr19:53496768..53496799,-!p1@ZNF702P!0.88!10.51!ZNF702P;;chr6:44233252..44233296,-!p1@NFKBIE!0.87!67.36!NFKBIE;;chr7:64023441..64023462,-!p1@ZNF680!0.87!53.99!ZNF680;;chr9:35732647..35732678,+!p2@CREB3!0.87!37.26!CREB3;;chr17:38256877..38256900,-!p2@NR1D1!0.87!21.50!NR1D1;;chr4:87857491..87857519,+!p10@AFF1!0.87!9.08!AFF1;;chr11:47236489..47236567,+!p2@DDB2!0.86!91.73!DDB2;;chr18:19749353..19749367,+!p4@GATA6!0.86!6.21!GATA6;;chr1:199996702..199996732,+!p5@NR5A2!0.86!6.21!NR5A2;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.21!HOXA5;;chr17:70117153..70117174,+!p1@SOX9!0.85!65.93!SOX9;;chr4:185395633..185395651,-!p2@IRF2!0.85!10.03!IRF2;;chr5:131826457..131826514,-!p1@IRF1!0.84!248.43!IRF1;;chr10:111967345..111967422,+!p1@MXI1!0.84!103.67!MXI1;;chr17:38256822..38256851,-!p1@NR1D1!0.84!49.21!NR1D1;;chr7:101459230..101459243,+!p2@CUX1!0.84!31.05!CUX1;;chr8:72756667..72756736,-!p2@MSC!0.84!9.56!MSC;;chr12:57914286..57914304,-!p1@DDIT3!0.83!225.50!DDIT3;;chr15:60884706..60884743,-!p1@RORA!0.83!31.53!RORA;;chr10:44101902..44101932,+!p2@ZNF485!0.83!12.42!ZNF485;;chr5:124082470..124082483,-!p8@ZNF608!0.83!5.73!ZNF608;;chr5:142779999..142780026,-!p20@NR3C1!0.83!5.73!NR3C1;;chr8:76319876..76319926,+!p1@HNF4G!0.83!5.73!HNF4G;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.75!ZNF296;;chr19:57752022..57752108,+!p1@ZNF805!0.82!26.28!ZNF805;;chr19:53193731..53193767,-!p1@ZNF83!0.81!52.55!ZNF83;;chr5:124084493..124084524,-!p2@ZNF608!0.81!12.90!ZNF608;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.60!PITX1;;chr8:72756637..72756664,-!p3@MSC!0.81!6.21!MSC;;chr9:114287433..114287513,+!p1@ZNF483!0.80!14.81!ZNF483;;chr8:67525473..67525518,-!p1@MYBL1!0.80!12.90!MYBL1;;chr1:23696308..23696339,-!p2@ZNF436!0.80!11.94!ZNF436;;chr5:124084466..124084484,-!p6@ZNF608!0.80!5.26!ZNF608;;chr3:141043050..141043063,+!p22@ZBTB38!0.80!5.26!ZBTB38;;chr4:299227..299272,-!p1@ZNF732!0.80!5.26!ZNF732;;chr15:96874012..96874042,+!p2@NR2F2!0.79!50.64!NR2F2;;chr19:49140609..49140643,-!p1@DBP!0.79!31.53!DBP;;chr19:57019215..57019250,+!p1@ZNF471!0.79!8.12!ZNF471;;chr1:8938709..8938720,-!p3@ENO1!0.78!268.50!ENO1;;chr19:45252008..45252024,+!p2@BCL3!0.78!17.68!BCL3;;chr8:28243785..28243799,-!p6@ZNF395!0.78!6.21!ZNF395;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.81!EPAS1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.77!10.99!ZNF395;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.60!FOXD1;;chr11:47236584..47236679,+!p1@DDB2!0.76!56.85!DDB2;;chr6:43337180..43337244,-!p1@ZNF318!0.76!20.07!ZNF318;;chr10:98592674..98592724,+!p2@LCOR!0.76!10.03!LCOR;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.17!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.76!5.73!HOXB2;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.78!HOXC10;;chr2:176969097..176969109,+!p3@HOXD11!0.76!4.78!HOXD11;;chr5:172662197..172662216,-!p1@NKX2-5!0.76!4.78!NKX2-5;;chr6:1612300..1612324,+!p3@FOXC1!0.76!4.78!FOXC1;;chr7:27219849..27219867,-!p6@HOXA10!0.76!4.78!HOXA10;;chr17:46655730..46655791,-!p1@HOXB4!0.75!12.42!HOXB4;;chr6:45390025..45390076,+!p2@RUNX2!0.75!11.94!RUNX2;;chr7:27135591..27135658,-!p1@HOXA1!0.75!9.56!HOXA1;;chr6:144329531..144329546,-!p5@PLAGL1!0.75!7.64!PLAGL1;;chr2:113057415..113057477,+!p3@ZC3H6!0.75!6.21!ZC3H6;;chr12:66218003..66218018,+!p9@HMGA2!0.75!5.73!HMGA2;;chr3:178789622..178789633,-!p3@ZMAT3!0.74!9.08!ZMAT3;;chr15:96875041..96875052,+!p17@NR2F2!0.74!6.69!NR2F2;;chr17:38465441..38465481,+!p6@RARA!0.74!5.73!RARA;;chr7:44143925..44143970,+!p1@AEBP1!0.73!109.41!AEBP1;;chr5:139494712..139494759,+!p5@PURA!0.72!7.64!PURA;;chr10:102495147..102495159,+!p4@PAX2!0.72!4.30!PAX2;;chr16:51185172..51185197,-!p1@SALL1!0.72!4.30!SALL1;;chr18:19749504..19749515,+!p5@GATA6!0.72!4.30!GATA6;;chr19:16435423..16435484,+!p5@KLF2!0.72!4.30!KLF2;;chr19:44952635..44952668,-!p1@ZNF229!0.71!22.93!ZNF229;;chr21:36421535..36421610,-!p2@RUNX1!0.71!16.24!RUNX1;;chr12:72057747..72057854,+!p4@THAP2!0.71!12.42!THAP2;;chr6:45389791..45389832,+!p3@RUNX2!0.71!11.47!RUNX2;;chr1:23696448..23696453,-!p5@ZNF436!0.71!5.26!ZNF436;;chr7:64363638..64363667,+!p1@ZNF273!0.70!22.45!ZNF273;;chr2:148778973..148779035,+!p3@MBD5!0.70!11.47!MBD5;;chr6:28109608..28109693,+!p1@ZNF192!0.69!75.01!ZNF192;;chr19:52598958..52599026,-!p1@ZNF841!0.69!42.04!ZNF841;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.69!16.72!HNRPK;;chr8:123793959..123793977,+!p4@ZHX2!0.69!8.12!ZHX2;;chr19:12551785..12551823,-!p1@ZNF443!0.69!6.69!ZNF443;;chr19:38085768..38085821,+!p1@ZNF540!0.69!6.21!ZNF540;;chr7:6655225..6655279,+!p1@ENST00000457543!0.69!6.21!ZNF853;;chr19:37407411..37407451,+!p3@ZNF568!0.69!5.26!ZNF568;;chr6:1612248..1612281,+!p2@FOXC1!0.69!4.30!FOXC1;;chr7:92076740..92076834,+!p1@GATAD1!0.68!109.41!GATAD1;;chr19:53400852..53400962,-!p1@ZNF320!0.68!43.95!ZNF320;;chr5:142784003..142784065,-!p2@NR3C1!0.68!35.35!NR3C1;;chr6:126240380..126240430,+!p2@NCOA7!0.68!10.99!NCOA7;;chr19:57078972..57079027,+!p2@ZNF470!0.68!6.21!ZNF470;;chr4:106155658..106155662,+!p5@TET2!0.68!4.78!TET2;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.68!3.82!POU3F3;;chr15:90294087..90294115,-!p1@MESP1!0.68!3.82!MESP1;;chr17:46692318..46692362,-!p5@HOXB8!0.68!3.82!HOXB8;;chr17:46703528..46703549,-!p5@HOXB9!0.68!3.82!HOXB9;;chr10:135122868..135122893,+!p3@ZNF511!0.68!3.82!ZNF511;;chr12:54380404..54380433,+!p3@HOXC10!0.68!3.82!HOXC10;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.82!TFAP2A;;chr7:27183263..27183284,-!p2@HOXA5!0.68!3.82!HOXA5;;chr7:27219833..27219845,-!p7@HOXA10!0.68!3.82!HOXA10;;chr9:115819058..115819082,-!p2@ZFP37!0.68!3.82!ZFP37;;chr7:4721885..4721945,+!p1@FOXK1!0.67!129.95!FOXK1;;chr3:169491171..169491205,+!p1@MYNN!0.67!73.57!MYNN;;chrX:101186981..101187030,-!p1@ZMAT1!0.67!13.38!ZMAT1;;chr2:113033141..113033162,+!p2@ZC3H6!0.67!8.60!ZC3H6;;chr3:5021268..5021282,+!p4@BHLHE40!0.67!8.12!BHLHE40;;chr4:185395590..185395627,-!p3@IRF2!0.67!4.78!IRF2;;chr1:158979686..158979745,+!p1@IFI16!0.66!136.64!IFI16;;chr3:141868357..141868393,-!p3@TFDP2!0.66!27.23!TFDP2;;chr10:97890024..97890064,+!p2@ZNF518A!0.66!10.99!ZNF518A;;chr19:37406934..37406949,-!p1@ZNF829!0.66!6.69!ZNF829;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.66!6.21!PCBP2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.66!6.21!ZC3H11A;;chr19:44669221..44669274,+!p1@ZNF226,p1@ZNF234!0.65!42.52!ZNF226;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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10471-106I3
 |is_a=EFO:0002091;;FF:0000210;;FF:0103732
 |is_obsolete=
+|library_id=CNhs11257
+|library_id_phase_based=2:CNhs11257
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10471
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10471
 |name=renal cell carcinoma cell line:TUHR10TKB
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11257,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
@@ Line 62: / Line 78: @@
 |rna_weight_ug=21.69075
 |sample_age=69
+|sample_category=cell lines
 |sample_cell_catalog=RCB1275
 |sample_cell_line=TUHR10TKB
@@ Line 83: / Line 100: @@
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FF:10471-106I3: Difference between revisions

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Latest revision as of 14:25, 3 June 2020

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