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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005897
|accession_numbers=CAGE;DRX008620;DRR009492;DRZ000917;DRZ002302;DRZ012267;DRZ013652
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0001154,UBERON:0000160,UBERON:0001153,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009854,UBERON:0010317,UBERON:0009856,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0001154,UBERON:0000160,UBERON:0001153,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009854,UBERON:0010317,UBERON:0009856,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.31!201.41!POU2AF1;;chr19:50922187..50922204,+!p1@SPIB!2.24!173.23!SPIB;;chr16:85932760..85932775,+!p1@IRF8!2.13!135.10!IRF8;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!2.03!104.99!MEF2B;;chr6:391743..391759,+!p1@IRF4!1.91!79.57!IRF4;;chr11:47400078..47400106,-!p1@SPI1!1.80!61.61!SPI1;;chr20:50159198..50159299,-!p1@NFATC2!1.67!65.76!NFATC2;;chr6:134210243..134210257,+!p1@TCF21!1.67!45.31!TCF21;;chr1:201979743..201979762,+!p1@ELF3!1.63!42.00!ELF3;;chr2:100759010..100759035,-!p1@AFF3!1.62!40.61!AFF3;;chr2:100759037..100759058,-!p2@AFF3!1.61!40.06!AFF3;;chrY:21906594..21906622,-!p1@KDM5D!1.60!39.23!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.60!38.96!SP140;;chr5:149546334..149546364,+!p1@CDX1!1.59!37.85!CDX1;;chr16:86544113..86544145,+!p1@FOXF1!1.57!44.76!FOXF1;;chr20:50179368..50179392,-!p2@NFATC2!1.56!45.59!NFATC2;;chr20:62680984..62680999,-!p1@SOX18!1.55!45.59!SOX18;;chr11:34642612..34642646,+!p1@EHF!1.54!33.98!EHF;;chr17:46682321..46682362,-!p1@HOXB6!1.53!32.88!HOXB6;;chr2:68592406..68592424,+!p1@PLEK!1.52!31.77!PLEK;;chr12:52445218..52445237,+!p1@NR4A1!1.51!375.19!NR4A1;;chr3:12330560..12330579,+!p1@PPARG!1.51!35.64!PPARG;;chr13:28543431..28543487,-!p1@CDX2!1.50!30.39!CDX2;;chr19:46801639..46801699,+!p1@HIF3A!1.50!30.39!HIF3A;;chr17:38020557..38020572,-!p4@IKZF3!1.50!30.39!IKZF3;;chr7:50348268..50348366,+!p4@IKZF1!1.49!30.11!IKZF1;;chr19:42636586..42636607,-!p1@POU2F2!1.48!78.74!POU2F2;;chr4:174451370..174451387,-!p1@HAND2!1.48!29.29!HAND2;;chr5:133451294..133451310,+!p2@TCF7!1.47!28.46!TCF7;;chr2:231090471..231090504,+!p2@SP140!1.47!28.18!SP140;;chr6:91006518..91006570,-!p1@BACH2!1.46!63.27!BACH2;;chr9:117150254..117150271,-!p1@AKNA!1.43!68.52!AKNA;;chr17:38020392..38020477,-!p1@IKZF3!1.40!24.31!IKZF3;;chr8:55370487..55370503,+!p1@SOX17!1.36!22.10!SOX17;;chr5:88120151..88120177,-!p6@MEF2C!1.36!21.83!MEF2C;;chr19:45971246..45971265,+!p1@FOSB!1.35!388.18!FOSB;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.80!MEF2C;;chr9:37034186..37034216,-!p2@PAX5!1.35!21.27!PAX5;;chr7:27192185..27192209,-!p1@HOXA3!1.34!21.00!HOXA3;;chr7:50343634..50343717,+!p2@IKZF1!1.34!20.72!IKZF1;;chr8:60031619..60031676,-!p1@TOX!1.33!43.10!TOX;;chr11:113930425..113930471,+!p1@ZBTB16!1.30!27.08!ZBTB16;;chr1:25291475..25291511,-!p2@RUNX3!1.30!18.79!RUNX3;;chr16:79634624..79634642,-!p1@MAF!1.28!69.90!MAF;;chr6:91006575..91006602,-!p2@BACH2!1.28!26.80!BACH2;;chr20:42984330..42984364,+!p2@HNF4A!1.28!18.23!HNF4A;;chr4:111544219..111544240,-!p1@PITX2!1.28!17.96!PITX2;;chr18:77155922..77155939,+!p1@NFATC1!1.27!47.24!NFATC1;;chr17:37934204..37934241,-!p3@IKZF3!1.25!16.85!IKZF3;;chr12:52437488..52437507,+!p2@NR4A1!1.24!16.58!NR4A1;;chr6:106534192..106534224,+!p1@PRDM1!1.21!42.27!PRDM1;;chr1:40105299..40105326,-!p1@HEYL!1.19!14.64!HEYL;;chr7:50344289..50344323,+!p1@IKZF1!1.19!14.37!IKZF1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.62!FOXP1;;chr4:111558135..111558198,-!p2@PITX2!1.18!14.09!PITX2;;chr17:37934365..37934387,-!p2@IKZF3!1.18!14.09!IKZF3;;chr8:76319876..76319926,+!p1@HNF4G!1.16!13.54!HNF4G;;chr16:79634595..79634620,-!p2@MAF!1.15!23.76!MAF;;chr4:149363494..149363543,-!p1@NR3C2!1.15!13.26!NR3C2;;chrX:49121165..49121179,-!p1@FOXP3!1.15!13.26!FOXP3;;chr9:37034469..37034474,-!p1@PAX5!1.15!13.26!PAX5;;chr2:145277882..145277967,-!p3@ZEB2!1.14!22.38!ZEB2;;chr19:13213662..13213686,-!p1@LYL1!1.13!18.51!LYL1;;chr5:133450365..133450444,+!p1@TCF7!1.12!55.53!TCF7;;chr13:28543285..28543314,-!p2@CDX2!1.12!12.16!CDX2;;chr4:109087445..109087463,-!p1@LEF1!1.12!12.16!LEF1;;chr1:25256756..25256774,-!p1@RUNX3!1.11!22.38!RUNX3;;chr10:101292684..101292706,+!p1@NKX2-3!1.11!11.88!NKX2-3;;chr21:39870339..39870443,-!p1@ERG!1.10!11.60!ERG;;chr14:75745523..75745537,+!p1@FOS!1.09!1351.86!FOS;;chr1:201979703..201979721,+!p2@ELF3!1.09!11.33!ELF3;;chr13:73633131..73633149,+!p1@KLF5!1.08!118.25!KLF5;;chr9:102584159..102584174,+!p2@NR4A3!1.08!19.89!NR4A3;;chr2:60778035..60778060,-!p4@BCL11A!1.08!13.26!BCL11A;;chr2:60781201..60781258,-!p3@BCL11A!1.08!11.05!BCL11A;;chr5:158526756..158526797,-!p3@EBF1!1.08!11.05!EBF1;;chr7:50344251..50344288,+!p3@IKZF1!1.08!11.05!IKZF1;;chr8:86099884..86099918,+!p4@E2F5!1.08!11.05!E2F5;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.52!ELF1;;chr6:135502501..135502546,+!p1@MYB!1.07!12.99!MYB;;chr2:122042770..122042785,-!p1@TFCP2L1!1.07!10.78!TFCP2L1;;chr11:128392273..128392308,-!p2@ETS1!1.06!45.03!ETS1;;chr22:38380543..38380569,-!p1@SOX10!1.06!10.50!SOX10;;chr17:38020516..38020544,-!p5@IKZF3!1.06!10.50!IKZF3;;chr13:72441315..72441454,-!p1@DACH1!1.05!20.72!DACH1;;chr3:63953435..63953499,+!p1@ATXN7!1.05!10.22!ATXN7;;chr7:50343895..50343936,+!p5@IKZF1!1.05!10.22!IKZF1;;chrY:21906761..21906810,-!p2@KDM5D!1.05!10.22!KDM5D;;chr5:134369879..134369898,-!p2@PITX1!1.04!9.95!PITX1;;chr11:34642656..34642667,+!p2@EHF!1.03!9.67!EHF;;chr3:18486354..18486377,-!p2@SATB1!1.01!11.60!SATB1;;chr5:153857778..153857794,-!p1@HAND1!1.01!9.12!HAND1;;chr3:169381420..169381535,-!p1@MECOM!1.00!1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001046;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0001045,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0001045,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg38.nobarcode.ctss.bed.gz
|id=FF:10189-103D9
|id=FF:10189-103D9
|is_a=EFO:0002091;;FF:0010189
|is_a=EFO:0002091;;FF:0010189
|is_obsolete=
|is_obsolete=
|library_id=CNhs12842
|library_id_phase_based=2:CNhs12842
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10189
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10189
|name=appendix, adult
|name=appendix, adult
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12842,LSID973,release012,COMPLETED
|profile_hcage=CNhs12842,LSID973,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 62: Line 78:
|rna_tube_id=103D9
|rna_tube_id=103D9
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=M
|sample_age=29
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 78: Line 95:
|sample_id=10189
|sample_id=10189
|sample_note=
|sample_note=
|sample_sex=29
|sample_sex=M
|sample_species=Human (Homo sapiens)
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_strain=
Line 84: Line 101:
|top_motifs=POU5F1:3.08485022017;POU2F1..3:2.55004753765;T:1.91555763667;SRF:1.85269887732;EP300:1.66604998157;TLX2:1.54164026665;SP1:1.44684650536;XCPE1{core}:1.43445189588;MAZ:1.40117570855;MTF1:1.39091546811;TBP:1.38838489791;NFATC1..3:1.37184010222;IRF7:1.33249397914;HNF4A_NR2F1,2:1.31088706891;FOX{F1,F2,J1}:1.30154936087;HNF1A:1.28786404014;SPZ1:1.26725824325;RBPJ:1.23330331162;IRF1,2:1.20138086109;FOX{D1,D2}:1.19859380334;ETS1,2:1.19527733326;EGR1..3:1.19210995708;PAX6:1.18589033771;TFAP4:1.17241570444;ZEB1:1.15998799655;SNAI1..3:1.15862418223;TFCP2:1.13908097724;FOXA2:1.08428711014;BREu{core}:1.03891872808;ELF1,2,4:1.02685109181;SOX5:1.02343764229;MYFfamily:1.00364277626;MTE{core}:1.00028742417;FOXO1,3,4:0.999078091361;GATA6:0.963071206562;SPI1:0.961120067691;PRDM1:0.946380236114;STAT1,3:0.944330522435;EBF1:0.941273970795;TFAP2{A,C}:0.939445776127;DMAP1_NCOR{1,2}_SMARC:0.931613788556;SPIB:0.929719175608;STAT2,4,6:0.919146669617;FOXP1:0.904834828683;MZF1:0.896699249413;SMAD1..7,9:0.885071787254;RUNX1..3:0.8827940183;HMX1:0.876543936904;ZNF148:0.872694267018;IKZF2:0.868707027698;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.854185213812;PATZ1:0.807430039429;HIC1:0.80580221026;ESR1:0.775426056247;PAX3,7:0.775141096434;DBP:0.765873572525;GTF2I:0.718444705753;TFAP2B:0.707175699181;MED-1{core}:0.697371964224;MYBL2:0.667005041363;GCM1,2:0.661554154923;PITX1..3:0.654141351822;MYOD1:0.622042972023;ZFP161:0.595660698958;LMO2:0.511653813675;TLX1..3_NFIC{dimer}:0.485982206869;ATF6:0.466827499974;SREBF1,2:0.454186502108;GFI1:0.434952344381;GATA4:0.426360420102;BPTF:0.420792986514;MEF2{A,B,C,D}:0.420237615194;NFKB1_REL_RELA:0.4172424892;NKX6-1,2:0.400471492711;GTF2A1,2:0.348011580979;ADNP_IRX_SIX_ZHX:0.340439053245;OCT4_SOX2{dimer}:0.328513128729;AR:0.322563479815;RREB1:0.314605296262;NR1H4:0.304302873814;GLI1..3:0.301602170722;POU6F1:0.300760001683;ATF2:0.300681637113;TGIF1:0.296030408824;TFDP1:0.281693837752;NANOG:0.27673253176;ATF4:0.268707565927;RXRA_VDR{dimer}:0.260108645722;NR6A1:0.249168542932;NR5A1,2:0.246869630213;PAX5:0.226268612051;TBX4,5:0.216378441702;ZNF423:0.193290359009;NFY{A,B,C}:0.185746778661;FOXD3:0.174112684349;E2F1..5:0.16257533063;ZNF238:0.159535594917;JUN:0.153246028406;CUX2:0.151454254227;AIRE:0.120306195563;NHLH1,2:0.118861280578;PBX1:0.11515731969;ZNF143:0.0833874392933;REST:0.0421838672276;FOXN1:0.0287838403718;RFX2..5_RFXANK_RFXAP:0.0224032873902;VSX1,2:-0.0136071330309;SOX2:-0.016003390236;TOPORS:-0.0353552480246;HAND1,2:-0.0488521028449;IKZF1:-0.0640377116939;TEAD1:-0.065010302029;NFIL3:-0.0695627475065;PDX1:-0.0703660353159;CDC5L:-0.0761180596941;GFI1B:-0.0799782775447;FOXL1:-0.120719552332;RXR{A,B,G}:-0.132318039006;FOX{I1,J2}:-0.135158985744;HOXA9_MEIS1:-0.162500492295;NKX2-3_NKX2-5:-0.164748376589;NKX3-2:-0.166803433278;SOX{8,9,10}:-0.17489025913;ATF5_CREB3:-0.182894812196;HOX{A6,A7,B6,B7}:-0.206334429397;HMGA1,2:-0.231164125203;NRF1:-0.23618309625;ZBTB16:-0.236328861017;ELK1,4_GABP{A,B1}:-0.246275354522;NANOG{mouse}:-0.247551567853;ZNF384:-0.25631949948;NR3C1:-0.273979650859;HBP1_HMGB_SSRP1_UBTF:-0.308232226491;NKX2-1,4:-0.389370039272;CREB1:-0.405300539473;HES1:-0.419310133585;LEF1_TCF7_TCF7L1,2:-0.421840521433;NFIX:-0.434127886073;AHR_ARNT_ARNT2:-0.449023914641;MAFB:-0.452605203353;SOX17:-0.462730947071;CDX1,2,4:-0.463512770545;RORA:-0.472324292233;PRRX1,2:-0.496427398301;NKX2-2,8:-0.500541480212;ZIC1..3:-0.501522050931;MYB:-0.566667435628;HSF1,2:-0.571490054951;CEBPA,B_DDIT3:-0.593906768181;GZF1:-0.594952100643;TAL1_TCF{3,4,12}:-0.600797143486;FOSL2:-0.60265844366;PAX2:-0.636156349326;FOS_FOS{B,L1}_JUN{B,D}:-0.637192685227;ALX4:-0.667959733107;XBP1:-0.684857619882;NFE2:-0.727419485431;CRX:-0.731944598318;POU3F1..4:-0.737002902013;ZBTB6:-0.748000992335;FOXP3:-0.778595814817;POU1F1:-0.778836276021;TP53:-0.791158566408;UFEwm:-0.811991804362;FOXQ1:-0.835300201439;KLF4:-0.855462792317;LHX3,4:-0.859875631283;HLF:-0.860773960142;RFX1:-0.873235157188;TEF:-0.874274248331;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.892855473233;bHLH_family:-0.937737578039;EVI1:-0.945396548571;NFE2L2:-0.953977238898;BACH2:-0.968015583935;YY1:-0.996050376954;PAX1,9:-1.02397588564;ALX1:-1.09909241962;NKX3-1:-1.17880255019;FOXM1:-1.17904411918;PPARG:-1.21332851188;ESRRA:-1.22178884261;ONECUT1,2:-1.23774887745;HOX{A5,B5}:-1.25073970257;ARID5B:-1.26131609181;EN1,2:-1.31649323507;NFE2L1:-1.33574641406;HOX{A4,D4}:-1.50075347606;HIF1A:-1.52047219142;STAT5{A,B}:-1.81250017972;PAX8:-1.81625167662;PAX4:-2.25960881731
|top_motifs=POU5F1:3.08485022017;POU2F1..3:2.55004753765;T:1.91555763667;SRF:1.85269887732;EP300:1.66604998157;TLX2:1.54164026665;SP1:1.44684650536;XCPE1{core}:1.43445189588;MAZ:1.40117570855;MTF1:1.39091546811;TBP:1.38838489791;NFATC1..3:1.37184010222;IRF7:1.33249397914;HNF4A_NR2F1,2:1.31088706891;FOX{F1,F2,J1}:1.30154936087;HNF1A:1.28786404014;SPZ1:1.26725824325;RBPJ:1.23330331162;IRF1,2:1.20138086109;FOX{D1,D2}:1.19859380334;ETS1,2:1.19527733326;EGR1..3:1.19210995708;PAX6:1.18589033771;TFAP4:1.17241570444;ZEB1:1.15998799655;SNAI1..3:1.15862418223;TFCP2:1.13908097724;FOXA2:1.08428711014;BREu{core}:1.03891872808;ELF1,2,4:1.02685109181;SOX5:1.02343764229;MYFfamily:1.00364277626;MTE{core}:1.00028742417;FOXO1,3,4:0.999078091361;GATA6:0.963071206562;SPI1:0.961120067691;PRDM1:0.946380236114;STAT1,3:0.944330522435;EBF1:0.941273970795;TFAP2{A,C}:0.939445776127;DMAP1_NCOR{1,2}_SMARC:0.931613788556;SPIB:0.929719175608;STAT2,4,6:0.919146669617;FOXP1:0.904834828683;MZF1:0.896699249413;SMAD1..7,9:0.885071787254;RUNX1..3:0.8827940183;HMX1:0.876543936904;ZNF148:0.872694267018;IKZF2:0.868707027698;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.854185213812;PATZ1:0.807430039429;HIC1:0.80580221026;ESR1:0.775426056247;PAX3,7:0.775141096434;DBP:0.765873572525;GTF2I:0.718444705753;TFAP2B:0.707175699181;MED-1{core}:0.697371964224;MYBL2:0.667005041363;GCM1,2:0.661554154923;PITX1..3:0.654141351822;MYOD1:0.622042972023;ZFP161:0.595660698958;LMO2:0.511653813675;TLX1..3_NFIC{dimer}:0.485982206869;ATF6:0.466827499974;SREBF1,2:0.454186502108;GFI1:0.434952344381;GATA4:0.426360420102;BPTF:0.420792986514;MEF2{A,B,C,D}:0.420237615194;NFKB1_REL_RELA:0.4172424892;NKX6-1,2:0.400471492711;GTF2A1,2:0.348011580979;ADNP_IRX_SIX_ZHX:0.340439053245;OCT4_SOX2{dimer}:0.328513128729;AR:0.322563479815;RREB1:0.314605296262;NR1H4:0.304302873814;GLI1..3:0.301602170722;POU6F1:0.300760001683;ATF2:0.300681637113;TGIF1:0.296030408824;TFDP1:0.281693837752;NANOG:0.27673253176;ATF4:0.268707565927;RXRA_VDR{dimer}:0.260108645722;NR6A1:0.249168542932;NR5A1,2:0.246869630213;PAX5:0.226268612051;TBX4,5:0.216378441702;ZNF423:0.193290359009;NFY{A,B,C}:0.185746778661;FOXD3:0.174112684349;E2F1..5:0.16257533063;ZNF238:0.159535594917;JUN:0.153246028406;CUX2:0.151454254227;AIRE:0.120306195563;NHLH1,2:0.118861280578;PBX1:0.11515731969;ZNF143:0.0833874392933;REST:0.0421838672276;FOXN1:0.0287838403718;RFX2..5_RFXANK_RFXAP:0.0224032873902;VSX1,2:-0.0136071330309;SOX2:-0.016003390236;TOPORS:-0.0353552480246;HAND1,2:-0.0488521028449;IKZF1:-0.0640377116939;TEAD1:-0.065010302029;NFIL3:-0.0695627475065;PDX1:-0.0703660353159;CDC5L:-0.0761180596941;GFI1B:-0.0799782775447;FOXL1:-0.120719552332;RXR{A,B,G}:-0.132318039006;FOX{I1,J2}:-0.135158985744;HOXA9_MEIS1:-0.162500492295;NKX2-3_NKX2-5:-0.164748376589;NKX3-2:-0.166803433278;SOX{8,9,10}:-0.17489025913;ATF5_CREB3:-0.182894812196;HOX{A6,A7,B6,B7}:-0.206334429397;HMGA1,2:-0.231164125203;NRF1:-0.23618309625;ZBTB16:-0.236328861017;ELK1,4_GABP{A,B1}:-0.246275354522;NANOG{mouse}:-0.247551567853;ZNF384:-0.25631949948;NR3C1:-0.273979650859;HBP1_HMGB_SSRP1_UBTF:-0.308232226491;NKX2-1,4:-0.389370039272;CREB1:-0.405300539473;HES1:-0.419310133585;LEF1_TCF7_TCF7L1,2:-0.421840521433;NFIX:-0.434127886073;AHR_ARNT_ARNT2:-0.449023914641;MAFB:-0.452605203353;SOX17:-0.462730947071;CDX1,2,4:-0.463512770545;RORA:-0.472324292233;PRRX1,2:-0.496427398301;NKX2-2,8:-0.500541480212;ZIC1..3:-0.501522050931;MYB:-0.566667435628;HSF1,2:-0.571490054951;CEBPA,B_DDIT3:-0.593906768181;GZF1:-0.594952100643;TAL1_TCF{3,4,12}:-0.600797143486;FOSL2:-0.60265844366;PAX2:-0.636156349326;FOS_FOS{B,L1}_JUN{B,D}:-0.637192685227;ALX4:-0.667959733107;XBP1:-0.684857619882;NFE2:-0.727419485431;CRX:-0.731944598318;POU3F1..4:-0.737002902013;ZBTB6:-0.748000992335;FOXP3:-0.778595814817;POU1F1:-0.778836276021;TP53:-0.791158566408;UFEwm:-0.811991804362;FOXQ1:-0.835300201439;KLF4:-0.855462792317;LHX3,4:-0.859875631283;HLF:-0.860773960142;RFX1:-0.873235157188;TEF:-0.874274248331;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.892855473233;bHLH_family:-0.937737578039;EVI1:-0.945396548571;NFE2L2:-0.953977238898;BACH2:-0.968015583935;YY1:-0.996050376954;PAX1,9:-1.02397588564;ALX1:-1.09909241962;NKX3-1:-1.17880255019;FOXM1:-1.17904411918;PPARG:-1.21332851188;ESRRA:-1.22178884261;ONECUT1,2:-1.23774887745;HOX{A5,B5}:-1.25073970257;ARID5B:-1.26131609181;EN1,2:-1.31649323507;NFE2L1:-1.33574641406;HOX{A4,D4}:-1.50075347606;HIF1A:-1.52047219142;STAT5{A,B}:-1.81250017972;PAX8:-1.81625167662;PAX4:-2.25960881731
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10189-103D9;search_select_hide=table117:FF:10189-103D9
}}
}}

Latest revision as of 12:26, 3 June 2020

Name:appendix, adult
Species:Human (Homo sapiens)
Library ID:CNhs12842
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexM
age29
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberR1234006-10
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005897
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12842 CAGE DRX008620 DRR009492
Accession ID Hg19

Library idBAMCTSS
CNhs12842 DRZ000917 DRZ002302
Accession ID Hg38

Library idBAMCTSS
CNhs12842 DRZ012267 DRZ013652
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.144
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.106
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.191
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.106
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.191
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.3
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.106
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.323
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.467
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0.262
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.106
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.106
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.457
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0.377
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.35
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0359
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.28
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.046
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.106
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.262
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.517
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.284
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.106
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.106
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0497
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.106
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00113
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.467
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0927
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.106
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.106
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0883
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.106
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.363
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.137
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.106
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.227
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.425
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.262
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.635
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.106
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.106
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12842

Jaspar motifP-value
MA0002.20.332
MA0003.10.178
MA0004.10.121
MA0006.10.309
MA0007.10.549
MA0009.10.896
MA0014.10.317
MA0017.10.175
MA0018.20.998
MA0019.10.314
MA0024.10.106
MA0025.10.865
MA0027.10.402
MA0028.10.195
MA0029.10.184
MA0030.10.00382
MA0031.10.0777
MA0035.20.415
MA0038.10.374
MA0039.20.188
MA0040.10.946
MA0041.10.908
MA0042.10.565
MA0043.10.409
MA0046.13.65488e-10
MA0047.20.0572
MA0048.10.0308
MA0050.19.52587e-11
MA0051.18.22093e-6
MA0052.10.0703
MA0055.16.57389e-4
MA0057.10.966
MA0058.10.0563
MA0059.10.00115
MA0060.10.539
MA0061.10.418
MA0062.20.715
MA0065.20.166
MA0066.10.00127
MA0067.10.278
MA0068.17.14068e-5
MA0069.10.366
MA0070.10.184
MA0071.10.0283
MA0072.10.151
MA0073.10.826
MA0074.10.293
MA0076.10.791
MA0077.10.72
MA0078.10.0775
MA0079.20.0456
MA0080.26.37867e-10
MA0081.10.025
MA0083.10.00117
MA0084.10.274
MA0087.10.349
MA0088.10.0881
MA0090.10.141
MA0091.10.295
MA0092.10.757
MA0093.10.121
MA0099.23.10524e-17
MA0100.10.282
MA0101.10.968
MA0102.20.214
MA0103.10.0544
MA0104.20.00119
MA0105.19.66562e-5
MA0106.10.00181
MA0107.10.748
MA0108.27.99201e-12
MA0111.10.977
MA0112.20.0115
MA0113.10.422
MA0114.10.978
MA0115.10.602
MA0116.10.00769
MA0117.10.187
MA0119.10.0253
MA0122.10.248
MA0124.10.642
MA0125.10.299
MA0131.10.78
MA0135.10.0525
MA0136.12.66906e-9
MA0137.20.0444
MA0138.20.603
MA0139.10.0747
MA0140.10.0629
MA0141.10.00356
MA0142.10.757
MA0143.10.245
MA0144.10.526
MA0145.10.753
MA0146.10.39
MA0147.14.50961e-4
MA0148.10.51
MA0149.10.0741
MA0150.11.37824e-7
MA0152.10.457
MA0153.15.96661e-7
MA0154.10.14
MA0155.10.916
MA0156.12.5227e-6
MA0157.10.768
MA0159.10.0797
MA0160.10.0349
MA0162.10.45
MA0163.12.9967e-8
MA0164.10.289
MA0258.10.0225
MA0259.10.0137



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12842

Novel motifP-value
10.0164
100.088
1000.1
1010.853
1020.504
1030.12
1040.986
1050.499
1060.563
1070.768
1080.947
1090.0525
110.111
1100.0969
1110.215
1120.994
1130.232
1140.00105
1150.837
1160.21
1170.0932
1180.0601
1190.865
120.947
1200.238
1210.514
1220.707
1230.903
1240.885
1250.15
1260.48
1270.587
1280.878
1290.0772
130.0634
1300.629
1310.618
1320.173
1330.00393
1340.0841
1350.12
1360.936
1370.913
1380.931
1390.137
140.707
1400.275
1410.276
1420.641
1430.344
1440.897
1450.944
1460.683
1470.575
1480.516
1490.977
150.0359
1500.321
1510.365
1520.972
1530.881
1540.606
1550.73
1560.298
1570.0436
1580.14
1590.473
160.0551
1600.325
1610.878
1620.912
1630.51
1640.0301
1650.751
1660.276
1670.0444
1680.0019
1690.11
170.473
180.0191
190.66
20.1
200.0704
210.311
220.586
230.944
240.572
250.99
260.298
270.392
280.903
290.0301
30.357
300.0954
310.63
320.135
330.152
340.34
350.105
360.0395
370.0269
380.737
390.76
40.347
400.101
410.18
420.415
430.119
440.536
450.357
460.0882
470.113
480.132
490.131
50.263
500.662
510.905
520.451
530.393
540.982
550.6
560.693
570.109
580.774
590.786
60.385
600.944
610.951
620.542
630.355
640.194
650.603
660.0815
670.225
680.81
690.146
70.66
700.0172
710.0308
720.369
730.18
740.883
750.0371
760.216
770.588
780.46
790.0533
80.147
800.0196
810.87
820.292
830.238
840.00636
850.185
860.962
870.936
880.657
890.408
90.36
900.122
910.451
920.622
930.221
940.0573
950.0518
960.716
970.418
980.0987
990.7



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12842


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0001154 (vermiform appendix)
0000160 (intestine)
0001153 (caecum)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009854 (digestive tract diverticulum)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010189 (human appendix - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0001045 (midgut)
UBERON:0010316 (germ layer / neural crest)

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