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MCL coexpression mm9:3635: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0.0433346774607173,0,0.0382552662437523,0,0,0,0.437650373031374,0.222275536604552,0.219623705203497,0.167816996443068,0.132974075745021,0.25499836612659,0.222425597079285,0.0416219695316507,0.0266920508443725,0,0.0772891376920122,0.186247380975497,0.140171293530744,0.0345550213698982,0,0,0.0644551523736777,0,0,0,0,0.0251851694391322,0,0,0,0,0,0,0,0.0268958570242819,0,0,0,0,0.150730568741075,0.0572918942991433,0,0,0.0243951393312357,0,0,0,0,0,0,0.211468232885568,0.502373013066421,0.44101650659982,0,0.036473692999102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0624790033400087,0.265497858372332,0.123324183983283,0.164916621963082,0,0,0,0,0,0,0,0,0,0,0.0998886631252179,0.299401731119732,0,0,0,0,0,0,0,0,0,0,0.0217063266948359,0.0288864301259584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0276479775833212,0.0177082436763704,0,0,0,0,0,0,0,0,0.0250735332543124,0,0,0,0,0,0,0,0,0,0,0.0305000873390897,0,0.0307600234638862,0.0260028669173171,0,0,0,0.0159873092058965,0,0,0,0,0.0287332171976309,0,0,0,0.114771842372738,0.033967285130882,0,0,0,0,0,0,0,0,0,0,0,0,0.0283276255534183,0.0262901170742449,0,0,0,0,0,0,0.0088766307709278,0.0199314599765119,0.0211109604769229,0,0.0673966482607687,0,0,0,0,0,0,0.065796237176923,0.0435044438464451,0.133602461950533,0.629496391544337,0.108534146772924,0.165845626367351,0.118388013872984,0.106721500351206,0.154771915064852,0.0490852578607018,0,0,0,0,0,0,0.0258054912402382,0,0.0289603056057187,0.0214179370325552,0.0439346528837465,0.0429472425151403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0192144393809059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.04241575046071,0,0,0.0281130801321805,0,0,0,0,0,0,0,0,0,0,0.0163248575732391,0,0.0370293221228937,0,0.172143157105235,0,0,0.0249837052527249,0.184833145104458,0.135296902321206,0.0454519033743665,0.0379242374775927,0.0187395237590185,0,0,0,0,0,0,0,0,0,0,0.069957971098037,0,0,0,0,0,0.0225994036878694,0,0,0,0,0,0.352036803750709,0.122222104369356,0.364723901097137,0.452430817915229,0.232960202587324,0.323053404699871,0.440710343709379,0.378202860018332,0.275639594636205,0.326764820157587,0.348307995225469,0.381671370515652,0.410548845303831,0.396712178521192,0,0,0,0,0.0255698190552108,0.0249001161321988,0,0,0,0,0,0,0.0427681247589483,0,0,0,0,0,0,0,0,0.022819361633082,0,0,0,0,0,0,0.0326153702592452,0,0,0,0.0179679295550985,0,0,0,0,0,0,0,0.0236506641178082,0,0,0,0,0,0.0338091069434337,0,0.0644808278156693,0,0,0,0,0.0255354818037453,0,0,0,0,0,0.0301880386106292|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.334877767561925,0.231455218399161,0.231008947931991,0.127893569522672,0.120273978885459,0.180011747370744,0.207349631308431,0,0,0,0.0636076933539527,0.226747351639347,0.153628809860867,0.0354470656487682,0,0,0.0644551523736777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226095853111613,0,0,0,0,0,0,0,0,0,0,0.264561190163111,0.389294454188438,0.525389071779607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217425091336261,0,0.19361921200471,0,0,0,0,0,0,0,0,0,0,0.0893284091371433,0.449102596679598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123988367667141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0652566657696677,0.10536076625968,0.58831251521849,0,0.210606173730573,0.177582020809476,0.133153884834288,0.170978156452844,0.0736278867910527,0,0,0,0,0,0,0,0,0,0,0.0659019793256198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179727725901961,0,0,0,0.189427680629844,0.0894734883806707,0.0681778550615498,0.056886356216389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354884955343103,0.0801664161057822,0.348797592572923,0.385450588255466,0.234544307802584,0.378537703726113,0.447612521917812,0.393907644105234,0.257133949661431,0.226821830940387,0.280449899040128,0.336358567251731,0.404729313740917,0.420990979827301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0000791!3.52e-16!9;CL:0000789!3.52e-16!9;CL:0002420!3.52e-16!9;CL:0002419!3.52e-16!9;CL:0000790!3.52e-16!9;CL:0000838!1.54e-14!12;CL:0000624!3.35e-14!8;CL:0000542!3.04e-13!13;CL:0000051!3.04e-13!13;CL:0000084!6.97e-13!11;CL:0000827!6.97e-13!11;CL:0000893!1.36e-10!6;CL:0002489!1.36e-10!6;CL:0000898!1.36e-10!6;CL:0000809!1.36e-10!6;CL:0000810!1.36e-10!6;CL:0000895!1.36e-10!6;CL:0000808!1.36e-10!6;CL:0000894!1.36e-10!6;CL:0000806!1.36e-10!6;CL:0000807!1.36e-10!6;CL:0000805!1.36e-10!6;CL:0002425!1.36e-10!6;CL:0002436!1.36e-10!6;CL:0002427!1.36e-10!6;CL:0002428!1.36e-10!6;CL:0002429!1.36e-10!6;CL:0002433!1.36e-10!6;CL:0002431!1.36e-10!6;CL:0002432!1.36e-10!6;CL:0002242!2.45e-10!16;CL:0002031!5.58e-10!25;CL:0000738!1.34e-09!17;CL:0002087!1.34e-09!17;CL:0000988!3.85e-07!32;CL:0002032!3.85e-07!32;CL:0000037!3.85e-07!32;CL:0000566!3.85e-07!32;CL:0000837!3.85e-07!32|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0004177!1.03e-30!29;UBERON:0005057!1.03e-30!29;UBERON:0002370!1.94e-30!23;UBERON:0000974!1.94e-30!23;UBERON:0004807!1.94e-30!23;UBERON:0005058!1.94e-30!23;UBERON:0003351!1.94e-30!23;UBERON:0009113!1.94e-30!23;UBERON:0003295!1.94e-30!23;UBERON:0009722!1.94e-30!23;UBERON:0005562!1.94e-30!23;UBERON:0007690!1.94e-30!23;UBERON:0006562!6.19e-29!24;UBERON:0003408!6.19e-29!24;UBERON:0001557!6.19e-29!24;UBERON:0001042!6.19e-29!24;UBERON:0008814!6.19e-29!24;UBERON:0009145!6.19e-29!24;UBERON:0000072!4.30e-25!27;UBERON:0002193!4.74e-25!48;UBERON:0002405!4.74e-25!48;UBERON:0000077!2.37e-24!35;UBERON:0002390!5.86e-23!45;UBERON:0003061!5.86e-23!45;UBERON:0003929!4.54e-21!55;UBERON:0002368!1.09e-18!60;UBERON:0001041!3.43e-18!80;UBERON:0000063!4.38e-18!35;UBERON:0005911!7.13e-18!69;UBERON:0000065!8.04e-18!41;UBERON:0007811!1.98e-17!36;UBERON:0001004!2.96e-17!42;UBERON:0002530!1.11e-16!65;UBERON:0000490!2.58e-16!66;UBERON:0000949!2.42e-14!72;UBERON:0000153!1.04e-13!43;UBERON:0001007!1.08e-11!116;UBERON:0001555!1.08e-11!116;UBERON:0007026!1.08e-11!116;UBERON:0004119!2.39e-11!118;UBERON:0000925!2.39e-11!118;UBERON:0006595!2.39e-11!118;UBERON:0004921!3.58e-11!114;UBERON:0003081!1.31e-08!87;UBERON:0001048!1.48e-07!134;UBERON:0000064!7.18e-07!99|tfbs_overrepresentation_for_novel_motifs=0.752782,0.564138,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,1.47843,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.756749,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,0.411696,0.608816,0.144706,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.724277,0.610669,0.474221,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,1.08907,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,2.1742,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,4.94084,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.928366,1.38502,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,3.74474,1.39822,1.28513,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.421338|tfbs_overrepresentation_jaspar=MA0003.1;0.245953,MA0004.1;0.801718,MA0006.1;1.46714,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;0.635031,MA0019.1;1.08369,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;0.61552,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;1.69964,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;0.353763,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;0.190475,MA0056.1;0,MA0057.1;0.337566,MA0058.1;0.690848,MA0059.1;0.705317,MA0060.1;0.502699,MA0061.1;1.33581,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;0.343188,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;0.844726,MA0072.1;1.2796,MA0073.1;6.00139,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;1.0091,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.27999,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;0.762845,MA0093.1;0.62555,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;0.71579,MA0103.1;0.647985,MA0105.1;0.405648,MA0106.1;1.01755,MA0107.1;0.640607,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;0.537669,MA0115.1;1.38041,MA0116.1;0.602598,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;0.898603,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;0.541532,MA0145.1;0.292366,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.40695,MA0138.2;1.07027,MA0002.2;0.466067,MA0137.2;0.668025,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;0.29236,MA0065.2;0.79573,MA0150.1;0.784464,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;1.65374,MA0155.1;0.312898,MA0156.1;0.656895,MA0157.1;1.12772,MA0158.1;0,MA0159.1;0.569393,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.499274,MA0163.1;0.157796,MA0164.1;0.933981,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;1.06348,MA0079.2;0.651053,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442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|gostat_on_MCL_coexpression=
}}

Latest revision as of 20:25, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr7:75420850..75420852,+p3@ENSMUST00000153805
Mm9::chr7:75432306..75432324,+p@chr7:75432306..75432324
+
Mm9::chr7:75483223..75483226,+p@chr7:75483223..75483226
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
mature alpha-beta T cell3.52e-169
alpha-beta T cell3.52e-169
immature T cell3.52e-169
mature T cell3.52e-169
immature alpha-beta T cell3.52e-169
lymphoid lineage restricted progenitor cell1.54e-1412
CD4-positive, alpha-beta T cell3.35e-148
lymphocyte3.04e-1313
common lymphoid progenitor3.04e-1313
T cell6.97e-1311
pro-T cell6.97e-1311
thymocyte1.36e-106
double negative thymocyte1.36e-106
naive T cell1.36e-106
double-positive, alpha-beta thymocyte1.36e-106
CD4-positive, alpha-beta thymocyte1.36e-106
naive thymus-derived CD4-positive, alpha-beta T cell1.36e-106
DN4 thymocyte1.36e-106
DN1 thymic pro-T cell1.36e-106
DN2 thymocyte1.36e-106
DN3 thymocyte1.36e-106
immature single positive thymocyte1.36e-106
early T lineage precursor1.36e-106
mature CD4 single-positive thymocyte1.36e-106
resting double-positive thymocyte1.36e-106
double-positive blast1.36e-106
CD69-positive double-positive thymocyte1.36e-106
CD69-positive, CD4-positive single-positive thymocyte1.36e-106
CD4-positive, CD8-intermediate double-positive thymocyte1.36e-106
CD24-positive, CD4 single-positive thymocyte1.36e-106
nucleate cell2.45e-1016
hematopoietic lineage restricted progenitor cell5.58e-1025
leukocyte1.34e-0917
nongranular leukocyte1.34e-0917
hematopoietic cell3.85e-0732
hematopoietic oligopotent progenitor cell3.85e-0732
hematopoietic stem cell3.85e-0732
angioblastic mesenchymal cell3.85e-0732
hematopoietic multipotent progenitor cell3.85e-0732

Uber Anatomy
Ontology termp-valuen
hemopoietic organ1.03e-3029
immune organ1.03e-3029
thymus1.94e-3023
neck1.94e-3023
respiratory system epithelium1.94e-3023
hemolymphoid system gland1.94e-3023
pharyngeal epithelium1.94e-3023
thymic region1.94e-3023
pharyngeal gland1.94e-3023
entire pharyngeal arch endoderm1.94e-3023
thymus primordium1.94e-3023
early pharyngeal endoderm1.94e-3023
pharynx6.19e-2924
gland of gut6.19e-2924
upper respiratory tract6.19e-2924
chordate pharynx6.19e-2924
pharyngeal arch system6.19e-2924
pharyngeal region of foregut6.19e-2924
segment of respiratory tract4.30e-2527
hemolymphoid system4.74e-2548
immune system4.74e-2548
mixed endoderm/mesoderm-derived structure2.37e-2435
hematopoietic system5.86e-2345
blood island5.86e-2345
gut epithelium4.54e-2155
endocrine gland1.09e-1860
foregut3.43e-1880
organ segment4.38e-1835
endo-epithelium7.13e-1869
respiratory tract8.04e-1841
craniocervical region1.98e-1736
respiratory system2.96e-1742
gland1.11e-1665
unilaminar epithelium2.58e-1666
endocrine system2.42e-1472
anterior region of body1.04e-1343
digestive system1.08e-11116
digestive tract1.08e-11116
primitive gut1.08e-11116
endoderm-derived structure2.39e-11118
endoderm2.39e-11118
presumptive endoderm2.39e-11118
subdivision of digestive tract3.58e-11114
lateral plate mesoderm1.31e-0887
primordium1.48e-07134
organ part7.18e-0799


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.245953
MA0004.10.801718
MA0006.11.46714
MA0007.10.784593
MA0009.11.27673
MA0014.10.133574
MA0017.10.635031
MA0019.11.08369
MA0024.11.23079
MA0025.11.51835
MA0027.12.9431
MA0028.10.61552
MA0029.11.20789
MA0030.11.21482
MA0031.11.17722
MA0038.10.963265
MA0040.11.28983
MA0041.11.69964
MA0042.10.69885
MA0043.11.3775
MA0046.11.31428
MA0048.10.353763
MA0050.10.845669
MA0051.10.973068
MA0052.11.29825
MA0055.10.190475
MA0056.10
MA0057.10.337566
MA0058.10.690848
MA0059.10.705317
MA0060.10.502699
MA0061.11.33581
MA0063.10
MA0066.10.951196
MA0067.11.63197
MA0068.10.343188
MA0069.11.29861
MA0070.11.28847
MA0071.10.844726
MA0072.11.2796
MA0073.16.00139
MA0074.10.911576
MA0076.10.657929
MA0077.11.2569
MA0078.11.0091
MA0081.10.732313
MA0083.11.37668
MA0084.11.96428
MA0087.11.33189
MA0088.10.27999
MA0089.10
MA0090.10.762482
MA0091.10.816659
MA0092.10.762845
MA0093.10.62555
MA0095.10
MA0098.10
MA0100.10.89873
MA0101.10.71579
MA0103.10.647985
MA0105.10.405648
MA0106.11.01755
MA0107.10.640607
MA0108.21.10817
MA0109.10
MA0111.10.778753
MA0113.10.986839
MA0114.10.537669
MA0115.11.38041
MA0116.10.602598
MA0117.11.34691
MA0119.10.716476
MA0122.11.36752
MA0124.11.57762
MA0125.11.5017
MA0130.10
MA0131.11.07881
MA0132.10
MA0133.10
MA0135.11.4152
MA0136.10.933582
MA0139.10.462282
MA0140.10.898603
MA0141.10.671467
MA0142.11.16183
MA0143.11.00467
MA0144.10.541532
MA0145.10.292366
MA0146.10.151124
MA0147.10.556853
MA0148.10.820161
MA0149.10.722227
MA0062.20.412742
MA0035.20.903829
MA0039.20.40695
MA0138.21.07027
MA0002.20.466067
MA0137.20.668025
MA0104.20.48458
MA0047.20.962424
MA0112.20.29236
MA0065.20.79573
MA0150.10.784464
MA0151.10
MA0152.10.962542
MA0153.11.43238
MA0154.11.65374
MA0155.10.312898
MA0156.10.656895
MA0157.11.12772
MA0158.10
MA0159.10.569393
MA0160.10.823568
MA0161.10
MA0162.10.499274
MA0163.10.157796
MA0164.10.933981
MA0080.20.64167
MA0018.20.944669
MA0099.21.06348
MA0079.20.651053
MA0102.22.01714
MA0258.10.520639
MA0259.10.543506
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3635&oldid=3075634"