MCL coexpression mm9:2642: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0447119103300647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0268958570242819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0758605454091101,0.06146830772433,0.118526159018222,0,0,0,0,0,0,0,0.193593107409223,0.201946840916343,0.131666643909549,0.193851310793801,0.144615245337084,0.114468633927055,0.112747574346876,0,0,0.0503206892606,0.0755514313600341,0.109591111278947,0.116796107067481,0.164041121725736,0.071288452519974,0.129262007959329,0.0411688717934528,0.199402374024775,0.143075161820934,0.175983560319018,0,0,0,0,0,0,0,0,0.0190247082229972,0,0,0,0,0,0,0,0,0,0,0.0156522902305435,0,0,0,0.0384775301049317,0,0,0.0466704488455586,0,0,0,0,0,0.0288864301259584,0,0,0.638409254416884,0.832543026702642,0,0,0,0,0.040412512450981,0,0.0324548218569642,0.180362260479945,0.238813455301224,0.0273302421251786,0.153767972496525,0,0.145912994220262,0,0.0276479775833212,0,0,0.107050622707363,0.076276011958396,0.0548861047708598,0.047081044013769,0.0248661020373887,0.168947180340278,0.0565195041130833,0,0,0,0,0,0,0.0262771982799691,0,0,0,0,0,0,0,0,0,0,0,0.0159873092058965,0,0,0,0,0,0,0.186800070625125,0.156262233113743,0,0.033967285130882,0,0,0.0175476516793332,0.121689645029686,0,0,0.0966082634856667,0.0220712285691766,0.0324578881582755,0.0262678054601152,0,0,0.052008914984906,0.0848143190507417,0,0.031321375351146,0,0,0,0.0456110541284947,0.0088766307709278,0.0374478803817587,0.0211109604769229,0.031931605944455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0258054912402382,0,0,0.0214179370325552,0,0,0,0,0,0,0,0,0.103284788877895,0,0,0.039697855314012,0,0.0801069092510723,0,0,0,0,0,0.0482212633453103,0.276739146841894,0,0,0.0218458334520505,0.0442098583417606,0,0.0314648259551332,0,0.0250125273252447,0.037457000059879,0.0388067186600497,0,0.0448886284904907,0.077918677884868,0,0,0,0,0,0.0807804953017665,0,0,0,0.0441051829837388,0.038477471376504,0,0,0.362118551948621,0.0581806838242263,0.0621808004678041,0,0,0,0.066490133277276,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0.0212571866904302,0.0761878589197066,0.029694569192923,0.0979720902864591,0,0.0528849619509103,0.052847165733786,0,0.102991308956807,0,0,0.0201717422827811,0.0413836553923013,0,0,0,0.0160640156187697,0.0606923708479123,0.0706542299847177,0.057063472522347,0,0,0,0,0,0,0,0,0,0,0,0,0.0134626204920181,0,0,0,0,0,0,0.834453862098673,0.0249001161321988,0.045182366972886,0,0.335788555059332,0.28045457954536,0.342976806268749,0.410503081757602,0.222960466072017,0.226621173458704,0.162916389468355,0.273039156318539,0.200609602461063,0.147498655542805,0.10289183564197,0.118297355842181,0.162556747742883,0.119739645625895,0.0888631985998492,0.0275488346793605,0.0244314323529403,0.0532385261925647,0.0770720645687893,0,0.0652307405184904,0.0327057221205027,0,0.0685541447098365,0.086615264085534,0.0947142592318856,0.056390921288728,0.0983272906073977,0.0510715969527601,0.0870219126787703,0.0728275090656921,0.102399360614449,0.0473013282356163,0.0619157564037287,0.0392912409442346,0.100806040472361,0.0553810345421797,0.0694543997599358,0.0611980703630433,0.0975933916101277,0.0644808278156693,0.111497595739113,0.095454262161221,0.0496607338156813,0,0.0255354818037453,0.0909419182165296,0.06086072618503,0.0799292975106721,0.0468964074518807,0,0|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0800187930544913,0,0,0,0,0,0,0,0,0,0.210087710822348,0.187527419446322,0.0829019901297716,0.196259654667371,0.158886068781892,0.135918568883708,0.140942084123731,0,0,0.052188704109448,0.0620577069359474,0.144779277929812,0.135434985107224,0.182104477852721,0.106932678779961,0.193893011938994,0.0617533076901792,0.112145192034931,0.195757646211962,0.241944181742968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0482820047261801,0,0,0,0,0,0,0,0,0.654500895916531,0.748794649880122,0,0,0,0,0.0606187686764715,0,0,0.182264238536694,0.179388300989621,0,0.122046233034924,0,0.137740408373976,0,0,0,0,0.133578586898209,0.114414017937594,0.055406237837571,0,0,0.0999233952154288,0.0847792561696249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212419302822567,0.0812786020093627,0,0,0,0,0,0.0797901069290224,0,0,0,0,0,0,0,0,0,0,0,0.046982063026719,0,0,0,0.0294389011296462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130859448321889,0,0,0,0,0.0847275925579778,0,0,0,0,0,0,0.293133511567635,0,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999282245587464,0,0,0,0.0661577744756082,0,0,0,0.474908773147152,0,0.0650059127791652,0,0,0,0,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0.0445418537893845,0.0824580172145032,0,0.054943952156948,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.856249452797329,0,0,0,0.176546191435317,0.328278395983124,0.453517235932598,0.517404685814234,0.180573004668638,0.226621173458704,0.244374584202533,0.224020645200257,0.161464196262218,0.162308177550168,0,0.117722608900654,0.145825435924841,0.179609468438842,0.0945084131504676,0,0,0,0.081359932135904,0,0.0978461107777356,0,0,0.0388749848471105,0.0990244263857601,0.0472245945615809,0,0.129578075275077,0.0766073954291401,0,0.0596387295197733,0,0.0709519923534245,0.092873634605593,0.0589368614163519,0.10799917315244,0.0678996586311492,0.0729583017401753,0,0.104353329269123,0,0.132229279644795,0.112441925220423,0,0,0,0.0968441960560167,0.091291089277545,0.0845301845292944,0,0,0|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0000117!4.85e-14!23;CL:0000337!4.85e-14!23;CL:0000540!4.62e-09!33;CL:0000047!4.62e-09!33;CL:0000031!4.62e-09!33;CL:0000404!4.62e-09!33;CL:0000393!8.27e-07!39;CL:0000211!8.27e-07!39|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002020!2.85e-23!34;UBERON:0001049!3.08e-22!52;UBERON:0005068!3.08e-22!52;UBERON:0006241!3.08e-22!52;UBERON:0007135!3.08e-22!52;UBERON:0000073!4.31e-22!54;UBERON:0002346!7.68e-22!64;UBERON:0003075!7.68e-22!64;UBERON:0007284!7.68e-22!64;UBERON:0010371!1.70e-18!73;UBERON:0003528!4.95e-18!29;UBERON:0002791!4.95e-18!29;UBERON:0001893!4.95e-18!29;UBERON:0000955!8.03e-18!47;UBERON:0006238!8.03e-18!47;UBERON:0001017!2.32e-17!73;UBERON:0002616!8.56e-17!46;UBERON:0001016!1.51e-16!75;UBERON:0003056!1.11e-15!49;UBERON:0003080!1.19e-15!40;UBERON:0002780!4.26e-15!39;UBERON:0001890!4.26e-15!39;UBERON:0006240!4.26e-15!39;UBERON:0000956!1.54e-14!21;UBERON:0001869!1.54e-14!21;UBERON:0000203!1.54e-14!21;UBERON:0004121!1.71e-14!95;UBERON:0000924!1.71e-14!95;UBERON:0006601!1.71e-14!95;UBERON:0010314!6.19e-12!92;UBERON:0002619!9.84e-11!17;UBERON:0002021!2.64e-10!10;UBERON:0000411!2.64e-10!10;UBERON:0001950!2.64e-10!10;UBERON:0003076!2.40e-07!12;UBERON:0003057!2.40e-07!12;UBERON:0002240!3.04e-07!6;UBERON:0005174!3.04e-07!6;UBERON:0001137!3.04e-07!6|tfbs_overrepresentation_for_novel_motifs=0.752782,0.564138,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,1.05917,0.608816,0.144706,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,1.33334,0.610669,0.156582,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,1.58082,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,1.16164,1.32978,0.535545,0.195254,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.928366,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,1.649,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.609576,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,1.28513,0.954936,1.48249,0.993889,2.56136,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.135528|tfbs_overrepresentation_jaspar=MA0003.1;0.0699972,MA0004.1;0.801718,MA0006.1;0.60285,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;2.60058,MA0019.1;1.08369,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;0.61552,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;0.714279,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;0.353763,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;0.190475,MA0056.1;0,MA0057.1;0.337566,MA0058.1;0.690848,MA0059.1;0.705317,MA0060.1;0.502699,MA0061.1;0.5406,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;1.62747,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;1.96872,MA0072.1;1.2796,MA0073.1;0.971751,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;1.0091,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.27999,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;0.762845,MA0093.1;0.62555,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;0.71579,MA0103.1;0.647985,MA0105.1;1.04599,MA0106.1;1.01755,MA0107.1;0.640607,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;0.537669,MA0115.1;1.38041,MA0116.1;0.602598,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;2.07913,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;0.541532,MA0145.1;0.292366,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.0481552,MA0138.2;1.07027,MA0002.2;0.466067,MA0137.2;0.668025,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;0.29236,MA0065.2;0.79573,MA0150.1;0.784464,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;0.35067,MA0155.1;0.312898,MA0156.1;0.656895,MA0157.1;1.12772,MA0158.1;0,MA0159.1;1.39671,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.499274,MA0163.1;0.157796,MA0164.1;0.933981,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;1.06348,MA0079.2;0.890297,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0447119103300647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0268958570242819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0758605454091101,0.06146830772433,0.118526159018222,0,0,0,0,0,0,0,0.193593107409223,0.201946840916343,0.131666643909549,0.193851310793801,0.144615245337084,0.114468633927055,0.112747574346876,0,0,0.0503206892606,0.0755514313600341,0.109591111278947,0.116796107067481,0.164041121725736,0.071288452519974,0.129262007959329,0.0411688717934528,0.199402374024775,0.143075161820934,0.175983560319018,0,0,0,0,0,0,0,0,0.0190247082229972,0,0,0,0,0,0,0,0,0,0,0.0156522902305435,0,0,0,0.0384775301049317,0,0,0.0466704488455586,0,0,0,0,0,0.0288864301259584,0,0,0.638409254416884,0.832543026702642,0,0,0,0,0.040412512450981,0,0.0324548218569642,0.180362260479945,0.238813455301224,0.0273302421251786,0.153767972496525,0,0.145912994220262,0,0.0276479775833212,0,0,0.107050622707363,0.076276011958396,0.0548861047708598,0.047081044013769,0.0248661020373887,0.168947180340278,0.0565195041130833,0,0,0,0,0,0,0.0262771982799691,0,0,0,0,0,0,0,0,0,0,0,0.0159873092058965,0,0,0,0,0,0,0.186800070625125,0.156262233113743,0,0.033967285130882,0,0,0.0175476516793332,0.121689645029686,0,0,0.0966082634856667,0.0220712285691766,0.0324578881582755,0.0262678054601152,0,0,0.052008914984906,0.0848143190507417,0,0.031321375351146,0,0,0,0.0456110541284947,0.0088766307709278,0.0374478803817587,0.0211109604769229,0.031931605944455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0258054912402382,0,0,0.0214179370325552,0,0,0,0,0,0,0,0,0.103284788877895,0,0,0.039697855314012,0,0.0801069092510723,0,0,0,0,0,0.0482212633453103,0.276739146841894,0,0,0.0218458334520505,0.0442098583417606,0,0.0314648259551332,0,0.0250125273252447,0.037457000059879,0.0388067186600497,0,0.0448886284904907,0.077918677884868,0,0,0,0,0,0.0807804953017665,0,0,0,0.0441051829837388,0.038477471376504,0,0,0.362118551948621,0.0581806838242263,0.0621808004678041,0,0,0,0.066490133277276,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0.0212571866904302,0.0761878589197066,0.029694569192923,0.0979720902864591,0,0.0528849619509103,0.052847165733786,0,0.102991308956807,0,0,0.0201717422827811,0.0413836553923013,0,0,0,0.0160640156187697,0.0606923708479123,0.0706542299847177,0.057063472522347,0,0,0,0,0,0,0,0,0,0,0,0,0.0134626204920181,0,0,0,0,0,0,0.834453862098673,0.0249001161321988,0.045182366972886,0,0.335788555059332,0.28045457954536,0.342976806268749,0.410503081757602,0.222960466072017,0.226621173458704,0.162916389468355,0.273039156318539,0.200609602461063,0.147498655542805,0.10289183564197,0.118297355842181,0.162556747742883,0.119739645625895,0.0888631985998492,0.0275488346793605,0.0244314323529403,0.0532385261925647,0.0770720645687893,0,0.0652307405184904,0.0327057221205027,0,0.0685541447098365,0.086615264085534,0.0947142592318856,0.056390921288728,0.0983272906073977,0.0510715969527601,0.0870219126787703,0.0728275090656921,0.102399360614449,0.0473013282356163,0.0619157564037287,0.0392912409442346,0.100806040472361,0.0553810345421797,0.0694543997599358,0.0611980703630433,0.0975933916101277,0.0644808278156693,0.111497595739113,0.095454262161221,0.0496607338156813,0,0.0255354818037453,0.0909419182165296,0.06086072618503,0.0799292975106721,0.0468964074518807,0,0 | |||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0800187930544913,0,0,0,0,0,0,0,0,0,0.210087710822348,0.187527419446322,0.0829019901297716,0.196259654667371,0.158886068781892,0.135918568883708,0.140942084123731,0,0,0.052188704109448,0.0620577069359474,0.144779277929812,0.135434985107224,0.182104477852721,0.106932678779961,0.193893011938994,0.0617533076901792,0.112145192034931,0.195757646211962,0.241944181742968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0482820047261801,0,0,0,0,0,0,0,0,0.654500895916531,0.748794649880122,0,0,0,0,0.0606187686764715,0,0,0.182264238536694,0.179388300989621,0,0.122046233034924,0,0.137740408373976,0,0,0,0,0.133578586898209,0.114414017937594,0.055406237837571,0,0,0.0999233952154288,0.0847792561696249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212419302822567,0.0812786020093627,0,0,0,0,0,0.0797901069290224,0,0,0,0,0,0,0,0,0,0,0,0.046982063026719,0,0,0,0.0294389011296462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130859448321889,0,0,0,0,0.0847275925579778,0,0,0,0,0,0,0.293133511567635,0,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999282245587464,0,0,0,0.0661577744756082,0,0,0,0.474908773147152,0,0.0650059127791652,0,0,0,0,0.0738741926906438,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0.0445418537893845,0.0824580172145032,0,0.054943952156948,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.856249452797329,0,0,0,0.176546191435317,0.328278395983124,0.453517235932598,0.517404685814234,0.180573004668638,0.226621173458704,0.244374584202533,0.224020645200257,0.161464196262218,0.162308177550168,0,0.117722608900654,0.145825435924841,0.179609468438842,0.0945084131504676,0,0,0,0.081359932135904,0,0.0978461107777356,0,0,0.0388749848471105,0.0990244263857601,0.0472245945615809,0,0.129578075275077,0.0766073954291401,0,0.0596387295197733,0,0.0709519923534245,0.092873634605593,0.0589368614163519,0.10799917315244,0.0678996586311492,0.0729583017401753,0,0.104353329269123,0,0.132229279644795,0.112441925220423,0,0,0,0.0968441960560167,0.091291089277545,0.0845301845292944,0,0,0 | |||
|gostat_on_MCL_coexpression= | |||
|ontology_enrichment_celltype=CL:0000117!4.85e-14!23;CL:0000337!4.85e-14!23;CL:0000540!4.62e-09!33;CL:0000047!4.62e-09!33;CL:0000031!4.62e-09!33;CL:0000404!4.62e-09!33;CL:0000393!8.27e-07!39;CL:0000211!8.27e-07!39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.85e-23!34;UBERON:0001049!3.08e-22!52;UBERON:0005068!3.08e-22!52;UBERON:0006241!3.08e-22!52;UBERON:0007135!3.08e-22!52;UBERON:0000073!4.31e-22!54;UBERON:0002346!7.68e-22!64;UBERON:0003075!7.68e-22!64;UBERON:0007284!7.68e-22!64;UBERON:0010371!1.70e-18!73;UBERON:0003528!4.95e-18!29;UBERON:0002791!4.95e-18!29;UBERON:0001893!4.95e-18!29;UBERON:0000955!8.03e-18!47;UBERON:0006238!8.03e-18!47;UBERON:0001017!2.32e-17!73;UBERON:0002616!8.56e-17!46;UBERON:0001016!1.51e-16!75;UBERON:0003056!1.11e-15!49;UBERON:0003080!1.19e-15!40;UBERON:0002780!4.26e-15!39;UBERON:0001890!4.26e-15!39;UBERON:0006240!4.26e-15!39;UBERON:0000956!1.54e-14!21;UBERON:0001869!1.54e-14!21;UBERON:0000203!1.54e-14!21;UBERON:0004121!1.71e-14!95;UBERON:0000924!1.71e-14!95;UBERON:0006601!1.71e-14!95;UBERON:0010314!6.19e-12!92;UBERON:0002619!9.84e-11!17;UBERON:0002021!2.64e-10!10;UBERON:0000411!2.64e-10!10;UBERON:0001950!2.64e-10!10;UBERON:0003076!2.40e-07!12;UBERON:0003057!2.40e-07!12;UBERON:0002240!3.04e-07!6;UBERON:0005174!3.04e-07!6;UBERON:0001137!3.04e-07!6 | |||
}} |
Latest revision as of 18:51, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr11:118771350..118771372,- | p8@Rbfox3 |
Mm9::chr11:118771404..118771416,- | p@chr11:118771404..118771416 - |
Mm9::chr4:85059895..85059900,+ | p@chr4:85059895..85059900 + |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.85e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.85e-14 | 23 |
neuron | 4.62e-09 | 33 |
neuronal stem cell | 4.62e-09 | 33 |
neuroblast | 4.62e-09 | 33 |
electrically signaling cell | 4.62e-09 | 33 |
electrically responsive cell | 8.27e-07 | 39 |
electrically active cell | 8.27e-07 | 39 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.0699972 |
MA0004.1 | 0.801718 |
MA0006.1 | 0.60285 |
MA0007.1 | 0.784593 |
MA0009.1 | 1.27673 |
MA0014.1 | 0.133574 |
MA0017.1 | 2.60058 |
MA0019.1 | 1.08369 |
MA0024.1 | 1.23079 |
MA0025.1 | 1.51835 |
MA0027.1 | 2.9431 |
MA0028.1 | 0.61552 |
MA0029.1 | 1.20789 |
MA0030.1 | 1.21482 |
MA0031.1 | 1.17722 |
MA0038.1 | 0.963265 |
MA0040.1 | 1.28983 |
MA0041.1 | 0.714279 |
MA0042.1 | 0.69885 |
MA0043.1 | 1.3775 |
MA0046.1 | 1.31428 |
MA0048.1 | 0.353763 |
MA0050.1 | 0.845669 |
MA0051.1 | 0.973068 |
MA0052.1 | 1.29825 |
MA0055.1 | 0.190475 |
MA0056.1 | 0 |
MA0057.1 | 0.337566 |
MA0058.1 | 0.690848 |
MA0059.1 | 0.705317 |
MA0060.1 | 0.502699 |
MA0061.1 | 0.5406 |
MA0063.1 | 0 |
MA0066.1 | 0.951196 |
MA0067.1 | 1.63197 |
MA0068.1 | 1.62747 |
MA0069.1 | 1.29861 |
MA0070.1 | 1.28847 |
MA0071.1 | 1.96872 |
MA0072.1 | 1.2796 |
MA0073.1 | 0.971751 |
MA0074.1 | 0.911576 |
MA0076.1 | 0.657929 |
MA0077.1 | 1.2569 |
MA0078.1 | 1.0091 |
MA0081.1 | 0.732313 |
MA0083.1 | 1.37668 |
MA0084.1 | 1.96428 |
MA0087.1 | 1.33189 |
MA0088.1 | 0.27999 |
MA0089.1 | 0 |
MA0090.1 | 0.762482 |
MA0091.1 | 0.816659 |
MA0092.1 | 0.762845 |
MA0093.1 | 0.62555 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.89873 |
MA0101.1 | 0.71579 |
MA0103.1 | 0.647985 |
MA0105.1 | 1.04599 |
MA0106.1 | 1.01755 |
MA0107.1 | 0.640607 |
MA0108.2 | 1.10817 |
MA0109.1 | 0 |
MA0111.1 | 0.778753 |
MA0113.1 | 0.986839 |
MA0114.1 | 0.537669 |
MA0115.1 | 1.38041 |
MA0116.1 | 0.602598 |
MA0117.1 | 1.34691 |
MA0119.1 | 0.716476 |
MA0122.1 | 1.36752 |
MA0124.1 | 1.57762 |
MA0125.1 | 1.5017 |
MA0130.1 | 0 |
MA0131.1 | 1.07881 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.4152 |
MA0136.1 | 0.933582 |
MA0139.1 | 0.462282 |
MA0140.1 | 2.07913 |
MA0141.1 | 0.671467 |
MA0142.1 | 1.16183 |
MA0143.1 | 1.00467 |
MA0144.1 | 0.541532 |
MA0145.1 | 0.292366 |
MA0146.1 | 0.151124 |
MA0147.1 | 0.556853 |
MA0148.1 | 0.820161 |
MA0149.1 | 0.722227 |
MA0062.2 | 0.412742 |
MA0035.2 | 0.903829 |
MA0039.2 | 0.0481552 |
MA0138.2 | 1.07027 |
MA0002.2 | 0.466067 |
MA0137.2 | 0.668025 |
MA0104.2 | 0.48458 |
MA0047.2 | 0.962424 |
MA0112.2 | 0.29236 |
MA0065.2 | 0.79573 |
MA0150.1 | 0.784464 |
MA0151.1 | 0 |
MA0152.1 | 0.962542 |
MA0153.1 | 1.43238 |
MA0154.1 | 0.35067 |
MA0155.1 | 0.312898 |
MA0156.1 | 0.656895 |
MA0157.1 | 1.12772 |
MA0158.1 | 0 |
MA0159.1 | 1.39671 |
MA0160.1 | 0.823568 |
MA0161.1 | 0 |
MA0162.1 | 0.499274 |
MA0163.1 | 0.157796 |
MA0164.1 | 0.933981 |
MA0080.2 | 0.64167 |
MA0018.2 | 0.944669 |
MA0099.2 | 1.06348 |
MA0079.2 | 0.890297 |
MA0102.2 | 2.01714 |
MA0258.1 | 0.520639 |
MA0259.1 | 0.543506 |
MA0442.1 | 0 |