FFCP PHASE1:Hg19::chr2:70780951..70780966,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:70780951..70780966,-
|short_description=p1@TGFA
|description=CAGE_peak_1_at_TGFA_5end
|association_with_transcript=0bp_to_ENST00000418333,ENST00000460808_5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7039 | |EntrezGene=7039 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11765 | |HGNC=11765 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000418333,ENST00000460808_5end | |||
|cluster_id=chr2:70780951..70780966,- | |||
|coexpression_cluster_id=C356 | |||
|description=CAGE_peak_1_at_TGFA_5end | |||
|id=chr2:70780951..70780966,- | |||
|ontology_enrichment_celltype=CL:0000066!2.12e-19!254;CL:0002076!6.06e-15!43;CL:0000223!8.16e-15!59;CL:0002368!2.12e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.65e-12;42!CL:0002368;6.29e-09;13!CL:0002251;6.06e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.32e-22,253;CL:0002076,6.85e-17,42;CL:0000223,2.31e-16,58;CL:0002368,6.67e-09,13;CL:0002251,6.69e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;5.03e-09;58 | |||
|ontology_enrichment_disease=DOID:305!1.16e-13!106;DOID:0050687!8.36e-09!143;DOID:299!8.34e-08!25;DOID:1749!9.37e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.50e-09;14!DOID:299;1.62e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.39e-13,106;DOID:1749,1.27e-08,14;DOID:299,1.51e-08,25;DOID:0050687,2.95e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.47e-13!115;UBERON:0000467!2.73e-13!625;UBERON:0000480!3.02e-13!626;UBERON:0000468!1.61e-12!659;UBERON:0004111!7.62e-11!241;UBERON:0000922!2.04e-10!612;UBERON:0004119!6.71e-10!169;UBERON:0000925!6.71e-10!169;UBERON:0006595!6.71e-10!169;UBERON:0002050!7.90e-10!605;UBERON:0005423!7.90e-10!605;UBERON:0000062!1.13e-09!511;UBERON:0000923!1.44e-09!604;UBERON:0005291!1.44e-09!604;UBERON:0006598!1.44e-09!604;UBERON:0002532!1.44e-09!604;UBERON:0000475!5.73e-09!365;UBERON:0001049!2.25e-08!57;UBERON:0005068!2.25e-08!57;UBERON:0006241!2.25e-08!57;UBERON:0007135!2.25e-08!57;UBERON:0000025!2.50e-08!194;UBERON:0005177!4.68e-08!107;UBERON:0005911!7.72e-08!82;UBERON:0002780!2.80e-07!41;UBERON:0001890!2.80e-07!41;UBERON:0006240!2.80e-07!41;UBERON:0001007!3.97e-07!155;UBERON:0001555!3.97e-07!155;UBERON:0007026!3.97e-07!155;UBERON:0001893!6.25e-07!34;UBERON:0000477!6.95e-07!286;UBERON:0002020!7.21e-07!34;UBERON:0003528!7.21e-07!34;UBERON:0003080!8.82e-07!42;UBERON:0002791!9.88e-07!33 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,9.42e-12,240;UBERON:0007023,1.54e-11,114;UBERON:0000922,6.86e-10,592;UBERON:0000025,2.17e-09,192;UBERON:0004119,4.15e-09,160;UBERON:0000925,4.15e-09,160;UBERON:0006595,4.15e-09,160;UBERON:0001049,7.00e-09,56;UBERON:0005068,7.00e-09,56;UBERON:0006241,7.00e-09,56;UBERON:0007135,7.00e-09,56;UBERON:0005423,1.20e-08,581;UBERON:0011216,1.29e-08,223;UBERON:0010371,1.31e-08,104;UBERON:0005177,2.47e-08,101;UBERON:0000073,5.07e-08,53;UBERON:0002616,5.07e-08,53;UBERON:0005911,2.93e-07,82;UBERON:0000483,4.50e-07,306;UBERON:0002780,5.01e-07,41;UBERON:0001890,5.01e-07,41;UBERON:0003080,5.01e-07,41;UBERON:0006240,5.01e-07,41;UBERON:0001893,8.47e-07,34;UBERON:0003528,9.84e-07,34;UBERON:0002020,9.84e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,12.0409628885739,4.88460817580699,12.2327168392896,13.4521158896511,0,0,10.7572023432284,9.04041792035965,10.9546513558106,19.0293791528298,0,0.204000691244253,0,0.85870796139317,0.547497700291537,0.376627918784408,0,0,0,0,1.15148819429164,0.464448369948228,42.2933763260306,65.060478456102,68.4044918808557,0,0,0,0.553995408531877,1.40381113229099,1.30206522429511,0.447830948479849,0.32389366601898,0,0.872389432677388,0.377875943688809,0.485168122375632,0.232429036905685,2.05583944010913,1.23882548358041,6.32923263108731,6.14785695669842,4.96612682766029,0.344745680736619,2.5819387343353,0,0.564727018627814,1.09162460023138,1.12361742222542,0.612167784741805,1.28371610830437,0,7.58657990429447,7.97854630486527,7.2458207590558,1.45104619314292,3.40431134814684,3.11411124497787,3.01498398308092,7.30076085788282,2.17188844705117,1.21079900526674,2.57794345191295,2.21523671208619,0,0,0.209658645508376,0.44931452458598,0,0.32145117339416,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0.560508562981536,0,0.393419540227666,1.96505381374582,1.23360899399706,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741432815810302,0.267540828089713,0,0,0,0,0.253019692019503,0.95569624297229,0,0,0.150575119077773,0.511946444617674,0,1.18388626022008,0,3.42731463482045,1.33720097891754,1.15859523106239,0,0,0,0,0,1.01392563272577,0,4.86634870302636,1.89069634328136,2.66075276955077,0.702678285545008,3.99486180268024,44.4440251716901,48.5727620047602,19.7973910129357,14.8010276704377,11.3014266441035,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,3.68192674041137,13.2933674646019,3.80136052859256,24.1621436972688,0,0,0,0,0,0,0,0,6.58902087180316,11.6334079244498,34.0153360671177,0,0.759783069987479,0.264818361626438,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0.30648779579902,0,0,2.15267562826634,0,0.211931901159562,2.40072876867522,0.309157587715317,0.257640540045629,0.18611685633159,3.03797398034279,0.389748020644795,1.26216887122057,0.368199594569197,0,1.42003837006646,3.22406714328449,0.169560592310488,79.430210650115,96.8248728097463,75.429608587308,1.34171076742555,0.530119073285941,1.04574548582567,1.14027160516907,1.26160425437814,1.09493207722749,0,0.643240938192885,2.76269842704961,0,0,0.118306800039844,0.337169380156203,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0.4115740113314,0,1.26755034821831,0.982827216677626,0.590789906681404,0,2.21379189377604,23.1616543903009,32.0470833393187,33.7205259772859,98.2168060461633,50.2755257210816,0,0,0,1.62302566965108,0,21.7993336119221,13.8895653772983,11.2249949818413,3.1608175918371,2.57545848628462,0,0,0,46.8669169933885,64.3371551001632,92.1538132075512,45.5852880557498,80.2149670298535,49.8397482914775,2.46331618947972,7.83631062717712,3.10992173311158,5.47655822984453,4.54472760334968,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61727252471503,1.74306691720059,4.89867656792079,0,0,0,0,0,0,0,0,0,0,2.56139988262505,1.50939302401662,1.15508732651774,0.508189248444927,1.30139853857622,0.773288812777695,2.01019518401218,0,11.9841123831549,11.966458368161,33.1532410748828,0,1.00034104211935,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0.620304078368662,0.647142602455851,1.49418580924822,7.27506171471023,1.66435439510497,1.20956117331872,0.248107807818777,0.153461973288062,0,0,0,0,0,0,0,0,0,0.232420756919918,0.362578348774867,66.9691610812971,121.823148362191,0,0,0.131124414959424,35.1935698067781,24.4908771992039,6.27479815341484,23.3822759445217,14.8827796738955,1.13733384070897,0,0,0,0.812839312631559,1.50506932156456,39.760698595026,40.7227244375075,12.9847357738863,0.438519753291869,0.261435451024901,0.256450125116389,0,0.976135183992909,2.57602529119306,0.366277859273374,0.082509499920588,64.3177402555713,30.5528315637165,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,69.4196644516108,82.4495388996305,70.4422172970104,57.761092868519,3.253918845081,7.24068397710472,2.7881490806424,2.15623506123262,3.72614221221915,5.21959795245044,13.899316432794,4.43687148900173,0,0,0,0,0,0,2.35484592059769,0,0,0,0.606547444719948,1.58510321173008,0.421258456238981,0,2.92456187557541,16.9040234810809,0,0,2.26016233240486,0,14.5956574553068,32.0069146235247,0,0,17.6532027957552,8.98488144489275,0.281695602532241,0,0,15.693526265175,0,0.211107635297664,0,0,0,47.1488352355009,67.7005298291145,51.1787628848216,1.22386941009813,68.8808596273968,99.3981706438991,56.3156294991578,72.5925944653992,9.64150457541122,8.41100927856613,15.9501212408766,2.1440859791201,6.58179636937911,7.78167973431261,5.40031437238115,13.4831279970026,0,0.962479855263359,37.0010726131358,0,0,0,7.49303481825465,0,0,0,0,0,0,0,0,0,0,0.403599414382095,0.425846237690326,4.12206413706918,0,0,0,0.781552381608161,0,0,0,0,0,10.4798702628603,0.879049075631364,0,0,0.284136146806413,0.71623345421307,0.296964680832639,2.15012491469462,8.94732882989668,6.75213198770461,1.44701316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| ||
|short_description=p1@TGFA | |||
}} | }} |
Latest revision as of 06:55, 18 September 2015
Short description: | p1@TGFA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TGFA_5end |
Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
Association with transcript: | 0bp_to_ENST00000418333, ENST00000460808_5end |
EntrezGene: | TGFA |
HGNC: | 11765 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.32e-22 | 253 |
endo-epithelial cell | 6.85e-17 | 42 |
endodermal cell | 2.31e-16 | 58 |
respiratory epithelial cell | 6.67e-09 | 13 |
epithelial cell of alimentary canal | 6.69e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 9.42e-12 | 240 |
adult organism | 1.54e-11 | 114 |
embryo | 6.86e-10 | 592 |
tube | 2.17e-09 | 192 |
endoderm-derived structure | 4.15e-09 | 160 |
endoderm | 4.15e-09 | 160 |
presumptive endoderm | 4.15e-09 | 160 |
neural tube | 7.00e-09 | 56 |
neural rod | 7.00e-09 | 56 |
future spinal cord | 7.00e-09 | 56 |
neural keel | 7.00e-09 | 56 |
developing anatomical structure | 1.20e-08 | 581 |
organ system subdivision | 1.29e-08 | 223 |
ecto-epithelium | 1.31e-08 | 104 |
trunk region element | 2.47e-08 | 101 |
regional part of nervous system | 5.07e-08 | 53 |
regional part of brain | 5.07e-08 | 53 |
endo-epithelium | 2.93e-07 | 82 |
epithelium | 4.50e-07 | 306 |
regional part of forebrain | 5.01e-07 | 41 |
forebrain | 5.01e-07 | 41 |
anterior neural tube | 5.01e-07 | 41 |
future forebrain | 5.01e-07 | 41 |
telencephalon | 8.47e-07 | 34 |
brain grey matter | 9.84e-07 | 34 |
gray matter | 9.84e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.39e-13 | 106 |
squamous cell carcinoma | 1.27e-08 | 14 |
adenocarcinoma | 1.51e-08 | 25 |
cell type cancer | 2.95e-08 | 143 |