FFCP PHASE1:Hg19::chr3:49977490..49977522,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:49977490..49977522,+
|short_description=p2@RBM6
|description=CAGE_peak_2_at_RBM6_5end
|association_with_transcript=0bp_to_ENST00000416583,ENST00000419610,E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10180 | |EntrezGene=10180 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9903 | |HGNC=9903 | ||
|TSSclassifier=strong | |||
|UniProt=C9JHR3,F8WCT0,B4DNY1 | |UniProt=C9JHR3,F8WCT0,B4DNY1 | ||
|association_with_transcript=0bp_to_ENST00000416583,ENST00000419610,ENST00000441115,ENST00000539992_5end | |||
|cluster_id=chr3:49977490..49977522,+ | |||
|description=CAGE_peak_2_at_RBM6_5end | |||
|id=chr3:49977490..49977522,+ | |||
|ontology_enrichment_celltype=CL:0000084!2.78e-10!25;CL:0000827!2.78e-10!25;CL:0000791!3.84e-09!18;CL:0000789!3.84e-09!18;CL:0002420!3.84e-09!18;CL:0002419!3.84e-09!18;CL:0000790!3.84e-09!18;CL:0000838!2.16e-08!52;CL:0000542!9.22e-08!53;CL:0000051!9.22e-08!53;CL:0000625!6.33e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000084;6.32e-10;25!CL:0000791;3.09e-09;18!CL:0000789;3.09e-09;18!CL:0002419;3.09e-09;18!CL:0000625;6.23e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.75e-10,25;CL:0000827,2.75e-10,25;CL:0000791,3.81e-09,18;CL:0000789,3.81e-09,18;CL:0002420,3.81e-09,18;CL:0002419,3.81e-09,18;CL:0000790,3.81e-09,18;CL:0000838,2.15e-08,52;CL:0000542,9.80e-08,53;CL:0000051,9.80e-08,53;CL:0000625,6.30e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;3.09e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.84e-18!115;UBERON:0001049!3.43e-11!57;UBERON:0005068!3.43e-11!57;UBERON:0006241!3.43e-11!57;UBERON:0007135!3.43e-11!57;UBERON:0002616!3.03e-10!59;UBERON:0000073!6.22e-10!94;UBERON:0001016!6.22e-10!94;UBERON:0001017!2.09e-09!82;UBERON:0005743!7.66e-09!86;UBERON:0003080!8.98e-09!42;UBERON:0002780!9.05e-09!41;UBERON:0001890!9.05e-09!41;UBERON:0006240!9.05e-09!41;UBERON:0000955!2.97e-08!69;UBERON:0006238!2.97e-08!69;UBERON:0002346!5.06e-08!90;UBERON:0002020!7.34e-08!34;UBERON:0003528!7.34e-08!34;UBERON:0002791!1.64e-07!33;UBERON:0001893!1.80e-07!34;UBERON:0003075!2.71e-07!86;UBERON:0007284!2.71e-07!86;UBERON:0001869!3.52e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;5.07e-07;34!UBERON:0002020;5.07e-07;34!UBERON:0002791;6.01e-07;32!UBERON:0002780;6.65e-07;41!UBERON:0001890;6.65e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.35e-18,114;UBERON:0001049,3.66e-11,56;UBERON:0005068,3.66e-11,56;UBERON:0006241,3.66e-11,56;UBERON:0007135,3.66e-11,56;UBERON:0001016,1.88e-10,89;UBERON:0000073,4.02e-10,53;UBERON:0002616,4.02e-10,53;UBERON:0001017,2.38e-09,81;UBERON:0002780,9.50e-09,41;UBERON:0001890,9.50e-09,41;UBERON:0003080,9.50e-09,41;UBERON:0006240,9.50e-09,41;UBERON:0000955,3.35e-08,68;UBERON:0006238,3.35e-08,68;UBERON:0003528,7.72e-08,34;UBERON:0002020,7.72e-08,34;UBERON:0002346,1.01e-07,86;UBERON:0002791,1.87e-07,32;UBERON:0001893,1.89e-07,34;UBERON:0001869,3.70e-07,32;UBERON:0003075,5.34e-07,82;UBERON:0007284,5.34e-07,82 | |||
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| ||
|short_description=p2@RBM6 | |||
}} | }} |
Latest revision as of 17:47, 18 September 2015
Short description: | p2@RBM6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RBM6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000416583, ENST00000419610, ENST00000441115, ENST00000539992_5end |
EntrezGene: | RBM6 |
HGNC: | 9903 |
UniProt: | C9JHR3F8WCT0B4DNY1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.75e-10 | 25 |
pro-T cell | 2.75e-10 | 25 |
mature alpha-beta T cell | 3.81e-09 | 18 |
alpha-beta T cell | 3.81e-09 | 18 |
immature T cell | 3.81e-09 | 18 |
mature T cell | 3.81e-09 | 18 |
immature alpha-beta T cell | 3.81e-09 | 18 |
lymphoid lineage restricted progenitor cell | 2.15e-08 | 52 |
lymphocyte | 9.80e-08 | 53 |
common lymphoid progenitor | 9.80e-08 | 53 |
CD8-positive, alpha-beta T cell | 6.30e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.35e-18 | 114 |
neural tube | 3.66e-11 | 56 |
neural rod | 3.66e-11 | 56 |
future spinal cord | 3.66e-11 | 56 |
neural keel | 3.66e-11 | 56 |
nervous system | 1.88e-10 | 89 |
regional part of nervous system | 4.02e-10 | 53 |
regional part of brain | 4.02e-10 | 53 |
central nervous system | 2.38e-09 | 81 |
regional part of forebrain | 9.50e-09 | 41 |
forebrain | 9.50e-09 | 41 |
anterior neural tube | 9.50e-09 | 41 |
future forebrain | 9.50e-09 | 41 |
brain | 3.35e-08 | 68 |
future brain | 3.35e-08 | 68 |
brain grey matter | 7.72e-08 | 34 |
gray matter | 7.72e-08 | 34 |
neurectoderm | 1.01e-07 | 86 |
regional part of telencephalon | 1.87e-07 | 32 |
telencephalon | 1.89e-07 | 34 |
cerebral hemisphere | 3.70e-07 | 32 |
neural plate | 5.34e-07 | 82 |
presumptive neural plate | 5.34e-07 | 82 |