FFCP PHASE1:Hg19::chr4:144435112..144435176,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:144435112..144435176,+
|short_description=p3@SMARCA5
|description=CAGE_peak_3_at_SMARCA5_5end
|association_with_transcript=35bp_to_AB384709,JF432501_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8467 | |EntrezGene=8467 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11101 | |HGNC=11101 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=35bp_to_AB384709,JF432501_5end | |||
|cluster_id=chr4:144435112..144435176,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_3_at_SMARCA5_5end | |||
|id=chr4:144435112..144435176,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.47e-11!112;CL:0000049!1.47e-11!112;CL:0000557!4.57e-10!71;CL:0000766!1.90e-09!76;CL:0000839!2.27e-09!70;CL:0002057!3.69e-09!42;CL:0000860!4.79e-09!45;CL:0000037!1.27e-08!172;CL:0000566!1.27e-08!172;CL:0002032!2.46e-08!165;CL:0000837!2.46e-08!165;CL:0000988!4.12e-08!182;CL:0002009!5.73e-08!65;CL:0002194!3.79e-07!63;CL:0000576!3.79e-07!63;CL:0000040!3.79e-07!63;CL:0000559!3.79e-07!63;CL:0000738!4.59e-07!140 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.49e-12,108;CL:0000049,1.49e-12,108;CL:0000557,6.07e-11,67;CL:0000766,1.06e-10,72;CL:0000037,3.63e-10,168;CL:0000839,3.83e-10,66;CL:0000988,4.32e-10,177;CL:0002032,1.12e-09,161;CL:0000837,1.12e-09,161;CL:0000473,1.30e-09,48;CL:0000234,1.30e-09,48;CL:0000860,3.43e-09,42;CL:0002057,3.43e-09,42;CL:0000738,9.77e-09,136;CL:0002009,1.53e-08,61;CL:0002031,8.49e-08,120;CL:0002194,1.33e-07,59;CL:0000576,1.33e-07,59;CL:0000040,1.33e-07,59;CL:0000559,1.33e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!7.50e-19!41;UBERON:0001890!7.50e-19!41;UBERON:0006240!7.50e-19!41;UBERON:0003080!7.59e-19!42;UBERON:0001049!1.14e-18!57;UBERON:0005068!1.14e-18!57;UBERON:0006241!1.14e-18!57;UBERON:0007135!1.14e-18!57;UBERON:0001017!1.58e-16!82;UBERON:0002020!2.09e-16!34;UBERON:0003528!2.09e-16!34;UBERON:0001893!2.99e-16!34;UBERON:0001869!3.83e-16!32;UBERON:0002791!1.05e-15!33;UBERON:0005743!7.49e-15!86;UBERON:0000073!9.30e-15!94;UBERON:0001016!9.30e-15!94;UBERON:0002616!2.96e-14!59;UBERON:0002619!1.03e-13!22;UBERON:0000956!5.13e-13!25;UBERON:0000203!5.13e-13!25;UBERON:0001950!1.08e-12!20;UBERON:0000955!1.62e-12!69;UBERON:0006238!1.62e-12!69;UBERON:0003056!1.42e-10!61;UBERON:0003075!1.50e-10!86;UBERON:0007284!1.50e-10!86;UBERON:0002371!4.08e-09!80;UBERON:0001474!6.93e-09!86;UBERON:0002346!7.10e-09!90;UBERON:0004765!5.49e-07!101;UBERON:0001434!5.49e-07!101;UBERON:0002390!8.77e-07!102;UBERON:0003061!8.77e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.72e-16;32!UBERON:0002619;1.09e-15;22!UBERON:0003528;1.14e-15;34!UBERON:0002020;1.14e-15;34!UBERON:0002791;1.22e-15;32!UBERON:0001893;2.16e-15;34!UBERON:0001950;1.31e-14;20!UBERON:0002780;1.67e-14;41!UBERON:0001890;1.67e-14;41!UBERON:0000956;2.97e-14;25!UBERON:0000203;2.97e-14;25!UBERON:0000073;7.41e-10;53!UBERON:0002616;7.41e-10;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,6.98e-21,41;UBERON:0001890,6.98e-21,41;UBERON:0003080,6.98e-21,41;UBERON:0006240,6.98e-21,41;UBERON:0001049,5.80e-20,56;UBERON:0005068,5.80e-20,56;UBERON:0006241,5.80e-20,56;UBERON:0007135,5.80e-20,56;UBERON:0000073,2.64e-18,53;UBERON:0002616,2.64e-18,53;UBERON:0003528,4.40e-18,34;UBERON:0002020,4.40e-18,34;UBERON:0001893,6.61e-18,34;UBERON:0001869,9.00e-18,32;UBERON:0002791,2.73e-17,32;UBERON:0001017,1.15e-16,81;UBERON:0001016,2.22e-16,89;UBERON:0002619,1.90e-15,22;UBERON:0001950,2.81e-14,20;UBERON:0000956,3.36e-14,25;UBERON:0000203,3.36e-14,25;UBERON:0003056,7.99e-13,61;UBERON:0003075,1.15e-12,82;UBERON:0007284,1.15e-12,82;UBERON:0000955,3.62e-12,68;UBERON:0006238,3.62e-12,68;UBERON:0002346,5.43e-11,86;UBERON:0010371,3.56e-10,104;UBERON:0002371,3.87e-10,76;UBERON:0001474,7.15e-10,82;UBERON:0004765,8.56e-08,90;UBERON:0002390,1.61e-07,98;UBERON:0003061,1.61e-07,98 | |||
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| ||
|short_description=p3@SMARCA5 | |||
}} | }} |
Latest revision as of 21:58, 15 September 2015
Short description: | p3@SMARCA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMARCA5_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 35bp_to_AB384709, JF432501_5end |
EntrezGene: | SMARCA5 |
HGNC: | 11101 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.49e-12 | 108 |
common myeloid progenitor | 1.49e-12 | 108 |
granulocyte monocyte progenitor cell | 6.07e-11 | 67 |
myeloid leukocyte | 1.06e-10 | 72 |
hematopoietic stem cell | 3.63e-10 | 168 |
myeloid lineage restricted progenitor cell | 3.83e-10 | 66 |
hematopoietic cell | 4.32e-10 | 177 |
hematopoietic oligopotent progenitor cell | 1.12e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.12e-09 | 161 |
defensive cell | 1.30e-09 | 48 |
phagocyte | 1.30e-09 | 48 |
classical monocyte | 3.43e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.43e-09 | 42 |
leukocyte | 9.77e-09 | 136 |
macrophage dendritic cell progenitor | 1.53e-08 | 61 |
hematopoietic lineage restricted progenitor cell | 8.49e-08 | 120 |
monopoietic cell | 1.33e-07 | 59 |
monocyte | 1.33e-07 | 59 |
monoblast | 1.33e-07 | 59 |
promonocyte | 1.33e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 6.98e-21 | 41 |
forebrain | 6.98e-21 | 41 |
anterior neural tube | 6.98e-21 | 41 |
future forebrain | 6.98e-21 | 41 |
neural tube | 5.80e-20 | 56 |
neural rod | 5.80e-20 | 56 |
future spinal cord | 5.80e-20 | 56 |
neural keel | 5.80e-20 | 56 |
regional part of nervous system | 2.64e-18 | 53 |
regional part of brain | 2.64e-18 | 53 |
brain grey matter | 4.40e-18 | 34 |
gray matter | 4.40e-18 | 34 |
telencephalon | 6.61e-18 | 34 |
cerebral hemisphere | 9.00e-18 | 32 |
regional part of telencephalon | 2.73e-17 | 32 |
central nervous system | 1.15e-16 | 81 |
nervous system | 2.22e-16 | 89 |
regional part of cerebral cortex | 1.90e-15 | 22 |
neocortex | 2.81e-14 | 20 |
cerebral cortex | 3.36e-14 | 25 |
pallium | 3.36e-14 | 25 |
pre-chordal neural plate | 7.99e-13 | 61 |
neural plate | 1.15e-12 | 82 |
presumptive neural plate | 1.15e-12 | 82 |
brain | 3.62e-12 | 68 |
future brain | 3.62e-12 | 68 |
neurectoderm | 5.43e-11 | 86 |
ecto-epithelium | 3.56e-10 | 104 |
bone marrow | 3.87e-10 | 76 |
bone element | 7.15e-10 | 82 |
skeletal element | 8.56e-08 | 90 |
hematopoietic system | 1.61e-07 | 98 |
blood island | 1.61e-07 | 98 |