FFCP PHASE1:Hg19::chr5:20575835..20575842,-: Difference between revisions
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|id=chr5:20575835..20575842,-
|short_description=p12@CDH18
|description=CAGE_peak_12_at_CDH18_5end
|association_with_transcript=129bp_to_ENST00000507632_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1016 | |EntrezGene=1016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1757 | |HGNC=1757 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=129bp_to_ENST00000507632_5end | |||
|cluster_id=chr5:20575835..20575842,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_12_at_CDH18_5end | |||
|id=chr5:20575835..20575842,- | |||
|ontology_enrichment_celltype=CL:0002605!2.80e-08!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.33e-118;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p12@CDH18 | |||
}} | }} |
Latest revision as of 12:56, 17 September 2015
Short description: | p12@CDH18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_CDH18_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 129bp_to_ENST00000507632_5end |
EntrezGene: | CDH18 |
HGNC: | 1757 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 8.15e-60 | 6 |
rhombic lip | 8.15e-60 | 6 |
segmental subdivision of hindbrain | 5.27e-53 | 12 |
hindbrain | 5.27e-53 | 12 |
presumptive hindbrain | 5.27e-53 | 12 |
segmental subdivision of nervous system | 5.24e-49 | 13 |
posterior neural tube | 1.31e-42 | 15 |
chordal neural plate | 1.31e-42 | 15 |
regional part of metencephalon | 2.91e-40 | 9 |
metencephalon | 2.91e-40 | 9 |
future metencephalon | 2.91e-40 | 9 |
medulla oblongata | 2.09e-14 | 3 |
myelencephalon | 2.09e-14 | 3 |
future myelencephalon | 2.09e-14 | 3 |
regional part of nervous system | 1.98e-12 | 53 |
regional part of brain | 1.98e-12 | 53 |
neural tube | 8.22e-12 | 56 |
neural rod | 8.22e-12 | 56 |
future spinal cord | 8.22e-12 | 56 |
neural keel | 8.22e-12 | 56 |
brain | 9.66e-10 | 68 |
future brain | 9.66e-10 | 68 |
central nervous system | 2.59e-08 | 81 |
neural plate | 2.59e-08 | 82 |
presumptive neural plate | 2.59e-08 | 82 |
neurectoderm | 5.87e-08 | 86 |
brainstem | 7.25e-08 | 6 |
nervous system | 1.48e-07 | 89 |