FFCP PHASE1:Hg19::chr6:112575733..112575755,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:112575733..112575755,-
|short_description=p2@LAMA4
|description=CAGE_peak_2_at_LAMA4_5end
|association_with_transcript=0bp_to_ENST00000243219,ENST000003686...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3910 | |EntrezGene=3910 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |HGNC=6484 | ||
|TSSclassifier=strong | |||
|UniProt=E5RFD7,E9PBW6,E9PBR9 | |UniProt=E5RFD7,E9PBW6,E9PBR9 | ||
|association_with_transcript=0bp_to_ENST00000243219,ENST00000368639,ENST00000424408,ENST00000454881_5end | |||
|cluster_id=chr6:112575733..112575755,- | |||
|coexpression_cluster_id=C2836 | |||
|description=CAGE_peak_2_at_LAMA4_5end | |||
|id=chr6:112575733..112575755,- | |||
|ontology_enrichment_celltype=CL:0000055!6.79e-31!180;CL:0000222!5.52e-26!119;CL:0000057!9.30e-18!75;CL:0000187!3.59e-16!54;CL:0000680!9.63e-16!57;CL:0000056!9.63e-16!57;CL:0000355!9.63e-16!57;CL:0000183!2.53e-15!59;CL:0000393!3.11e-14!60;CL:0000211!3.11e-14!60;CL:0002139!6.02e-14!24;CL:0000192!5.98e-13!42;CL:0000514!5.98e-13!42;CL:0000213!2.05e-11!57;CL:0000215!2.05e-11!57;CL:0000115!5.16e-11!35;CL:0000071!8.19e-11!18;CL:0002546!8.19e-11!18;CL:0000359!1.08e-10!32;CL:0002078!6.87e-10!44;CL:0002620!1.12e-09!23;CL:0000220!6.88e-09!246;CL:0002321!1.06e-08!248;CL:0000136!1.39e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.36e-14;24!CL:0000071;3.99e-11;18!CL:0000359;2.32e-10;32!CL:0002620;5.53e-10;23!CL:0000192;5.91e-10;43!CL:0000115;7.42e-10;36!CL:0000187;1.95e-09;55!CL:0000057;6.03e-08;73!CL:0000393;6.46e-08;61!CL:0000211;6.46e-08;61!CL:0000213;2.67e-07;58!CL:0000215;2.67e-07;58!CL:0002078;4.20e-07;45!CL:0000136;4.25e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.09e-26,121;CL:0000057,4.61e-19,76;CL:0000187,1.17e-16,55;CL:0000680,3.16e-16,58;CL:0000056,3.16e-16,58;CL:0000355,3.16e-16,58;CL:0002139,2.33e-14,24;CL:0000393,7.17e-14,61;CL:0000211,7.17e-14,61;CL:0000192,2.53e-13,43;CL:0000514,2.53e-13,43;CL:0000115,9.52e-12,36;CL:0000213,1.99e-11,58;CL:0000215,1.99e-11,58;CL:0000071,4.03e-11,18;CL:0002546,4.03e-11,18;CL:0000359,1.14e-10,32;CL:0002620,5.99e-10,23;CL:0002078,8.98e-10,45;CL:0000136,8.74e-08,15;CL:0002321,3.66e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002546;3.99e-11;18!CL:0000514;5.91e-10;43!CL:0000355;1.06e-08;58!CL:0000222;1.59e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.39e-27!79;UBERON:0007798!1.39e-27!79;UBERON:0000055!2.69e-24!69;UBERON:0004872!1.21e-23!84;UBERON:0001981!7.86e-22!60;UBERON:0007500!7.86e-22!60;UBERON:0004537!7.86e-22!60;UBERON:0006965!7.86e-22!60;UBERON:0001009!3.32e-21!113;UBERON:0004535!4.31e-21!110;UBERON:0004290!7.03e-18!70;UBERON:0000914!8.42e-18!83;UBERON:0002329!8.42e-18!83;UBERON:0003077!8.42e-18!83;UBERON:0003059!8.42e-18!83;UBERON:0007282!8.42e-18!83;UBERON:0009618!8.42e-18!83;UBERON:0007285!8.42e-18!83;UBERON:0003914!2.23e-17!118;UBERON:0001637!1.41e-16!42;UBERON:0003509!1.41e-16!42;UBERON:0004572!1.41e-16!42;UBERON:0002385!2.12e-16!63;UBERON:0001015!2.12e-16!63;UBERON:0000383!2.12e-16!63;UBERON:0000477!2.20e-16!286;UBERON:0001134!4.57e-16!61;UBERON:0002036!4.57e-16!61;UBERON:0003082!4.57e-16!61;UBERON:0000475!5.58e-16!365;UBERON:0004111!1.17e-15!241;UBERON:0000490!2.29e-15!138;UBERON:0000119!3.62e-15!312;UBERON:0004573!5.95e-15!33;UBERON:0004571!5.95e-15!33;UBERON:0000483!1.99e-14!309;UBERON:0000486!2.05e-14!82;UBERON:0005256!2.23e-13!143;UBERON:0000468!1.48e-12!659;UBERON:0000025!2.08e-12!194;UBERON:0002100!2.24e-11!216;UBERON:0000481!6.02e-11!347;UBERON:0001986!8.19e-11!18;UBERON:0004638!8.19e-11!18;UBERON:0004852!8.19e-11!18;UBERON:0000467!1.20e-10!625;UBERON:0000480!1.98e-10!626;UBERON:0000947!9.14e-10!21;UBERON:0010191!9.14e-10!21;UBERON:0006914!2.28e-09!25;UBERON:0000487!4.54e-09!22;UBERON:0002199!4.86e-08!45;UBERON:0002416!4.86e-08!45;UBERON:0003104!9.96e-08!238;UBERON:0009142!9.96e-08!238;UBERON:0000948!1.13e-07!24;UBERON:0005498!1.13e-07!24;UBERON:0004140!1.13e-07!24;UBERON:0009881!1.13e-07!24;UBERON:0004141!1.13e-07!24;UBERON:0003084!1.13e-07!24;UBERON:0007005!1.13e-07!24;UBERON:0004139!1.13e-07!24;UBERON:0004291!1.13e-07!24;UBERON:0007100!1.30e-07!27;UBERON:0003102!1.75e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.89e-14;33!UBERON:0004571;1.89e-14;33!UBERON:0001637;4.51e-13;42!UBERON:0003509;4.51e-13;42!UBERON:0004572;4.51e-13;42!UBERON:0000055;4.45e-12;65!UBERON:0007500;2.32e-11;56!UBERON:0001981;2.32e-11;56!UBERON:0004537;2.32e-11;56!UBERON:0002049;3.29e-11;75!UBERON:0007798;3.29e-11;75!UBERON:0004638;3.99e-11;18!UBERON:0001986;3.99e-11;18!UBERON:0004852;3.99e-11;18!UBERON:0000947;4.99e-10;21!UBERON:0010191;4.99e-10;21!UBERON:0000487;1.83e-09;22!UBERON:0006914;1.96e-09;25!UBERON:0002385;4.90e-08;31!UBERON:0001015;4.90e-08;31!UBERON:0000383;4.90e-08;31!UBERON:0000948;2.33e-07;22!UBERON:0004535;2.40e-07;109!UBERON:0007100;2.64e-07;25!UBERON:0001009;5.64e-07;112 | |||
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| ||
|short_description=p2@LAMA4 | |||
}} | }} |
Latest revision as of 22:12, 19 September 2015
Short description: | p2@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAMA4_5end |
Coexpression cluster: | C2836_Fibroblast_Endothelial_mature_Cardiac_Smooth_mesenchymal_Adipocyte |
Association with transcript: | 0bp_to_ENST00000243219, ENST00000368639, ENST00000424408, ENST00000454881_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFD7E9PBW6E9PBR9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.09e-26 | 121 |
fibroblast | 4.61e-19 | 76 |
muscle cell | 1.17e-16 | 55 |
muscle precursor cell | 3.16e-16 | 58 |
myoblast | 3.16e-16 | 58 |
multi-potent skeletal muscle stem cell | 3.16e-16 | 58 |
endothelial cell of vascular tree | 2.33e-14 | 24 |
electrically responsive cell | 7.17e-14 | 61 |
electrically active cell | 7.17e-14 | 61 |
smooth muscle cell | 2.53e-13 | 43 |
smooth muscle myoblast | 2.53e-13 | 43 |
endothelial cell | 9.52e-12 | 36 |
lining cell | 1.99e-11 | 58 |
barrier cell | 1.99e-11 | 58 |
blood vessel endothelial cell | 4.03e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.03e-11 | 18 |
vascular associated smooth muscle cell | 1.14e-10 | 32 |
skin fibroblast | 5.99e-10 | 23 |
meso-epithelial cell | 8.98e-10 | 45 |
fat cell | 8.74e-08 | 15 |
embryonic cell | 3.66e-07 | 250 |